RNA–Protein interactions for RNA: ENST00000409478.5

R3HDM1-202, Transcript of R3H domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene R3HDM1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-202ENST00000409478 NISCHQ9Y2I1 1504 aa10.67□□□□□ -0.7
R3HDM1-202ENST00000409478 HRCP23327 699 aa9.9□□□□□ -0.82
R3HDM1-202ENST00000409478 PELP1Q8IZL8 1130 aaKnown RBP9.89□□□□□ -0.83
R3HDM1-202ENST00000409478 MYT1Q01538 1121 aa9.6□□□□□ -0.87
R3HDM1-202ENST00000409478 PCGF6Q9BYE7 350 aa9.56□□□□□ -0.88
R3HDM1-202ENST00000409478 PPARGC1BQ86YN6 1023 aaKnown RBP9.54□□□□□ -0.88
R3HDM1-202ENST00000409478 MYO15BQ96JP2 1530 aa9.45□□□□□ -0.9
R3HDM1-202ENST00000409478 DCAF1Q9Y4B6 1507 aa9.44□□□□□ -0.9
R3HDM1-202ENST00000409478 SUPT5HO00267 1087 aaKnown RBP9.42□□□□□ -0.9
R3HDM1-202ENST00000409478 CHIC1Q5VXU3 224 aa9.39□□□□□ -0.91
R3HDM1-202ENST00000409478 SHROOM4Q9ULL8 1493 aa9.38□□□□□ -0.91
R3HDM1-202ENST00000409478 SCAF1Q9H7N4 1312 aaKnown RBP9.38□□□□□ -0.91
R3HDM1-202ENST00000409478 ZEB1P37275 1124 aaPredicted RBP9.36□□□□□ -0.91
R3HDM1-202ENST00000409478 CCDC180Q9P1Z9 1646 aa9.35□□□□□ -0.91
R3HDM1-202ENST00000409478 TRIM26Q12899 539 aaPredicted RBP9.31□□□□□ -0.92
R3HDM1-202ENST00000409478 DCAF8L2P0C7V8 631 aa9.18□□□□□ -0.94
R3HDM1-202ENST00000409478 ACIN1Q9UKV3 1341 aaKnown RBP9.17□□□□□ -0.94
R3HDM1-202ENST00000409478 ZCCHC6Q5VYS8 1495 aaKnown RBP9.13□□□□□ -0.95
R3HDM1-202ENST00000409478 LOC105371045A0A1W2PR82 267 aa9.1□□□□□ -0.95
R3HDM1-202ENST00000409478 CENPBP07199 599 aaPredicted RBP9.09□□□□□ -0.95
R3HDM1-202ENST00000409478 NEUROD1Q13562 356 aa9.07□□□□□ -0.96
R3HDM1-202ENST00000409478 TTBK1Q5TCY1 1321 aaPredicted RBP9.07□□□□□ -0.96
R3HDM1-202ENST00000409478 GTF3C3Q9Y5Q9 886 aa9.05□□□□□ -0.96
R3HDM1-202ENST00000409478 DIEXFQ68CQ4 756 aaKnown RBP8.93□□□□□ -0.98
R3HDM1-202ENST00000409478 CCER1Q8TC90 406 aaPredicted RBP8.85□□□□□ -0.99
R3HDM1-202ENST00000409478 TRIM41Q8WV44 630 aa8.8□□□□□ -1
R3HDM1-202ENST00000409478 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.8□□□□□ -1
R3HDM1-202ENST00000409478 CLSPNQ9HAW4 1339 aa8.78□□□□□ -1
R3HDM1-202ENST00000409478 BCL11AQ9H165 835 aa8.77□□□□□ -1.01
R3HDM1-202ENST00000409478 ZNF316A6NFI3 1004 aaPredicted RBP8.75□□□□□ -1.01
R3HDM1-202ENST00000409478 ANP32EQ9BTT0 268 aa8.74□□□□□ -1.01
R3HDM1-202ENST00000409478 YTHDC1Q96MU7 727 aaKnown RBP8.71□□□□□ -1.01
R3HDM1-202ENST00000409478 ABCC9O60706 1549 aa8.71□□□□□ -1.02
R3HDM1-202ENST00000409478 FAM9AQ8IZU1 332 aaPredicted RBP8.68□□□□□ -1.02
R3HDM1-202ENST00000409478 MIER1Q8N108 512 aa8.64□□□□□ -1.03
R3HDM1-202ENST00000409478 RB1CC1Q8TDY2 1594 aa8.62□□□□□ -1.03
R3HDM1-202ENST00000409478 WRNQ14191 1432 aaPredicted RBP eCLIP8.61□□□□□ -1.03
R3HDM1-202ENST00000409478 SUPT16HQ9Y5B9 1047 aaKnown RBP8.61□□□□□ -1.03
R3HDM1-202ENST00000409478 RSF1Q96T23 1441 aaPredicted RBP8.61□□□□□ -1.03
R3HDM1-202ENST00000409478 TSHZ2Q9NRE2 1034 aa8.6□□□□□ -1.03
R3HDM1-202ENST00000409478 EHMT2Q96KQ7 1210 aa8.57□□□□□ -1.04
R3HDM1-202ENST00000409478 CSRNP3Q8WYN3 585 aa8.57□□□□□ -1.04
R3HDM1-202ENST00000409478 PRKCSHP14314 528 aaPredicted RBP8.48□□□□□ -1.05
R3HDM1-202ENST00000409478 ERICH6Q7L0X2 663 aa8.47□□□□□ -1.05
R3HDM1-202ENST00000409478 CEP162Q5TB80 1403 aa8.47□□□□□ -1.05
R3HDM1-202ENST00000409478 TNIKQ9UKE5 1360 aa8.44□□□□□ -1.06
R3HDM1-202ENST00000409478 MYT1LQ9UL68 1186 aa8.41□□□□□ -1.06
R3HDM1-202ENST00000409478 RBM19Q9Y4C8 960 aaKnown RBP8.4□□□□□ -1.07
R3HDM1-202ENST00000409478 EIF4G1Q04637 1599 aaKnown RBP8.38□□□□□ -1.07
R3HDM1-202ENST00000409478 SCRIBQ14160 1630 aa8.38□□□□□ -1.07
R3HDM1-202ENST00000409478 EEA1Q15075 1411 aa8.37□□□□□ -1.07
R3HDM1-202ENST00000409478 HNRNPUL2Q1KMD3 747 aaKnown RBP8.36□□□□□ -1.07
R3HDM1-202ENST00000409478 NACADO15069 1562 aa8.35□□□□□ -1.07
R3HDM1-202ENST00000409478 NEFLP07196 543 aa8.34□□□□□ -1.07
R3HDM1-202ENST00000409478 FKBP8Q14318 412 aa8.34□□□□□ -1.07
R3HDM1-202ENST00000409478 FANCIQ9NVI1 1328 aa8.33□□□□□ -1.08
R3HDM1-202ENST00000409478 BCANQ96GW7 911 aa8.33□□□□□ -1.08
R3HDM1-202ENST00000409478 GOLGA3Q08378 1498 aa8.32□□□□□ -1.08
R3HDM1-202ENST00000409478 BAZ1AQ9NRL2 1556 aaPredicted RBP8.31□□□□□ -1.08
R3HDM1-202ENST00000409478 MROH2BQ7Z745 1585 aa8.3□□□□□ -1.08
R3HDM1-202ENST00000409478 CCDC88BA6NC98 1476 aa8.3□□□□□ -1.08
R3HDM1-202ENST00000409478 UBTFP17480 764 aaKnown RBP8.29□□□□□ -1.08
R3HDM1-202ENST00000409478 MSH5O43196 834 aa8.29□□□□□ -1.08
R3HDM1-202ENST00000409478 APLP2Q06481 763 aa8.29□□□□□ -1.08
R3HDM1-202ENST00000409478 DHX57Q6P158 1386 aaKnown RBP8.29□□□□□ -1.08
R3HDM1-202ENST00000409478 ABCC8Q09428 1581 aa8.28□□□□□ -1.08
R3HDM1-202ENST00000409478 WIZO95785 1651 aa8.28□□□□□ -1.08
R3HDM1-202ENST00000409478 SOGA1O94964 1423 aa8.27□□□□□ -1.09
R3HDM1-202ENST00000409478 CECR2Q9BXF3 1484 aa8.27□□□□□ -1.09
R3HDM1-202ENST00000409478 VPS8Q8N3P4 1428 aa8.26□□□□□ -1.09
R3HDM1-202ENST00000409478 ERICH6BQ5W0A0 696 aa8.24□□□□□ -1.09
R3HDM1-202ENST00000409478 PABPN1Q86U42 306 aaKnown RBP eCLIP8.24□□□□□ -1.09
R3HDM1-202ENST00000409478 DEKP35659 375 aaKnown RBP8.23□□□□□ -1.09
R3HDM1-202ENST00000409478 CDK11AQ9UQ88 783 aaPredicted RBP8.23□□□□□ -1.09
R3HDM1-202ENST00000409478 CEP164Q9UPV0 1460 aa8.22□□□□□ -1.09
R3HDM1-202ENST00000409478 CLIP1P30622 1438 aa8.22□□□□□ -1.09
R3HDM1-202ENST00000409478 KIF21BO75037 1637 aa8.21□□□□□ -1.09
R3HDM1-202ENST00000409478 KCNH8Q96L42 1107 aa8.21□□□□□ -1.09
R3HDM1-202ENST00000409478 CCER2I3L3R5 266 aa8.2□□□□□ -1.1
R3HDM1-202ENST00000409478 ITGAEP38570 1179 aa8.2□□□□□ -1.1
R3HDM1-202ENST00000409478 TOP2AP11388 1531 aaKnown RBP8.19□□□□□ -1.1
R3HDM1-202ENST00000409478 BAZ1BQ9UIG0 1483 aaKnown RBP8.19□□□□□ -1.1
R3HDM1-202ENST00000409478 CUX2O14529 1486 aa8.19□□□□□ -1.1
R3HDM1-202ENST00000409478 RUSC2Q8N2Y8 1516 aa8.18□□□□□ -1.1
R3HDM1-202ENST00000409478 ANO8Q9HCE9 1232 aaPredicted RBP8.15□□□□□ -1.1
R3HDM1-202ENST00000409478 SMARCA2P51531 1590 aa8.14□□□□□ -1.11
R3HDM1-202ENST00000409478 RRBP1Q9P2E9 1410 aaKnown RBP8.14□□□□□ -1.11
R3HDM1-202ENST00000409478 ANP32CO43423 234 aa8.13□□□□□ -1.11
R3HDM1-202ENST00000409478 DDX10Q13206 875 aaKnown RBP8.12□□□□□ -1.11
R3HDM1-202ENST00000409478 PPP1R15AO75807 674 aaPredicted RBP8.12□□□□□ -1.11
R3HDM1-202ENST00000409478 TRIM52Q96A61 297 aa8.12□□□□□ -1.11
R3HDM1-202ENST00000409478 NOP58Q9Y2X3 529 aaKnown RBP8.12□□□□□ -1.11
R3HDM1-202ENST00000409478 PPP4R2Q9NY27 417 aa8.09□□□□□ -1.11
R3HDM1-202ENST00000409478 TIMELESSQ9UNS1 1208 aa8.09□□□□□ -1.11
R3HDM1-202ENST00000409478 UBE2Q2Q8WVN8 375 aa8.09□□□□□ -1.12
R3HDM1-202ENST00000409478 MAPKBP1O60336 1514 aa8.08□□□□□ -1.12
R3HDM1-202ENST00000409478 RTL5Q5HYW3 569 aaPredicted RBP8.08□□□□□ -1.12
R3HDM1-202ENST00000409478 SALL2Q9Y467 1007 aaPredicted RBP8.08□□□□□ -1.12
R3HDM1-202ENST00000409478 CCNB3Q8WWL7 1395 aa8.06□□□□□ -1.12
R3HDM1-202ENST00000409478 NBR1Q14596 966 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms