RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 PDS5BQ9NTI5 1447 aa24.95■■□□□ 1.58
NUP50-203ENST00000407019 LRRC9Q6ZRR7 1453 aa24.94■■□□□ 1.58
NUP50-203ENST00000407019 PCF11O94913 1555 aaKnown RBP24.94■■□□□ 1.58
NUP50-203ENST00000407019 CFAP43Q8NDM7 1665 aa24.93■■□□□ 1.58
NUP50-203ENST00000407019 CTTNBP2Q8WZ74 1663 aa24.92■■□□□ 1.58
NUP50-203ENST00000407019 ABCA5Q8WWZ7 1642 aa24.9■■□□□ 1.58
NUP50-203ENST00000407019 FHOD3Q2V2M9 1422 aa24.87■■□□□ 1.57
NUP50-203ENST00000407019 P3H3Q8IVL6 736 aa24.86■■□□□ 1.57
NUP50-203ENST00000407019 FYCO1Q9BQS8 1478 aa24.86■■□□□ 1.57
NUP50-203ENST00000407019 AQRO60306 1485 aaKnown RBP eCLIP24.84■■□□□ 1.576e-6■□□□□ 8.5
NUP50-203ENST00000407019 KIF21AQ7Z4S6 1674 aa24.83■■□□□ 1.56
NUP50-203ENST00000407019 GAPVD1Q14C86 1478 aa24.83■■□□□ 1.56
NUP50-203ENST00000407019 SCAF1Q9H7N4 1312 aaKnown RBP24.82■■□□□ 1.56
NUP50-203ENST00000407019 TDRD9Q8NDG6 1382 aaKnown RBP24.81■■□□□ 1.56
NUP50-203ENST00000407019 CASKIN1Q8WXD9 1431 aa24.81■■□□□ 1.56
NUP50-203ENST00000407019 DNAJC5BQ9UF47 199 aa24.8■■□□□ 1.56
NUP50-203ENST00000407019 PHLDB1Q86UU1 1377 aa24.8■■□□□ 1.56
NUP50-203ENST00000407019 ITGAEP38570 1179 aa24.79■■□□□ 1.56
NUP50-203ENST00000407019 FMN1Q68DA7 1419 aa24.76■■□□□ 1.55
NUP50-203ENST00000407019 ACIN1Q9UKV3 1341 aaKnown RBP24.76■■□□□ 1.55
NUP50-203ENST00000407019 ATP1B4Q9UN42 357 aaPredicted RBP24.75■■□□□ 1.55
NUP50-203ENST00000407019 TARBP1Q13395 1621 aaKnown RBP24.72■■□□□ 1.55
NUP50-203ENST00000407019 RAB3GAP2Q9H2M9 1393 aa24.72■■□□□ 1.55
NUP50-203ENST00000407019 CENPBP07199 599 aaPredicted RBP24.72■■□□□ 1.55
NUP50-203ENST00000407019 SAMD9Q5K651 1589 aa24.72■■□□□ 1.55
NUP50-203ENST00000407019 SNAPC4Q5SXM2 1469 aa24.69■■□□□ 1.54
NUP50-203ENST00000407019 NEUROD1Q13562 356 aa24.68■■□□□ 1.54
NUP50-203ENST00000407019 SETD5Q9C0A6 1442 aa24.67■■□□□ 1.54
NUP50-203ENST00000407019 FAM50AQ14320 339 aaKnown RBP24.66■■□□□ 1.54
NUP50-203ENST00000407019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.62■■□□□ 1.53
NUP50-203ENST00000407019 MAPKBP1O60336 1514 aa24.6■■□□□ 1.53
NUP50-203ENST00000407019 PBRM1Q86U86 1689 aa24.6■■□□□ 1.53
NUP50-203ENST00000407019 MRC2Q9UBG0 1479 aa24.59■■□□□ 1.53
NUP50-203ENST00000407019 MIER1Q8N108 512 aa24.59■■□□□ 1.53
NUP50-203ENST00000407019 THOC2Q8NI27 1593 aaKnown RBP24.58■■□□□ 1.53
NUP50-203ENST00000407019 GRIN2BQ13224 1484 aa24.56■■□□□ 1.52
NUP50-203ENST00000407019 MTUS2Q5JR59 1369 aa24.55■■□□□ 1.52
NUP50-203ENST00000407019 FGD6Q6ZV73 1430 aa24.53■■□□□ 1.52
NUP50-203ENST00000407019 LRRIQ1Q96JM4 1722 aa24.53■■□□□ 1.52
NUP50-203ENST00000407019 ADAMTS12P58397 1594 aa24.52■■□□□ 1.52
NUP50-203ENST00000407019 EHBP1L1Q8N3D4 1523 aa24.47■■□□□ 1.51
NUP50-203ENST00000407019 IQGAP2Q13576 1575 aa24.46■■□□□ 1.51
NUP50-203ENST00000407019 NCOA2Q15596 1464 aa24.44■■□□□ 1.5
NUP50-203ENST00000407019 SUPT6HQ7KZ85 1726 aaKnown RBP24.44■■□□□ 1.5
NUP50-203ENST00000407019 CCDC18Q5T9S5 1454 aa24.43■■□□□ 1.5
NUP50-203ENST00000407019 IFT140Q96RY7 1462 aa24.43■■□□□ 1.5
NUP50-203ENST00000407019 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
NUP50-203ENST00000407019 MYOM3Q5VTT5 1437 aa24.42■■□□□ 1.5
NUP50-203ENST00000407019 WDR62O43379 1518 aa24.41■■□□□ 1.5
NUP50-203ENST00000407019 GTF3C3Q9Y5Q9 886 aa24.41■■□□□ 1.5
NUP50-203ENST00000407019 HECW1Q76N89 1606 aa24.39■■□□□ 1.5
NUP50-203ENST00000407019 UGGT2Q9NYU1 1516 aa24.37■■□□□ 1.49
NUP50-203ENST00000407019 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
NUP50-203ENST00000407019 MAGI3Q5TCQ9 1506 aa24.35■■□□□ 1.49
NUP50-203ENST00000407019 ZNF608Q9ULD9 1512 aaPredicted RBP24.34■■□□□ 1.49
NUP50-203ENST00000407019 HFM1A2PYH4 1435 aa24.34■■□□□ 1.49
NUP50-203ENST00000407019 PTPRKQ15262 1439 aa24.32■■□□□ 1.48
NUP50-203ENST00000407019 SIN3AQ96ST3 1273 aa24.31■■□□□ 1.48
NUP50-203ENST00000407019 TIMELESSQ9UNS1 1208 aa24.31■■□□□ 1.48
NUP50-203ENST00000407019 PTPN23Q9H3S7 1636 aa24.31■■□□□ 1.48
NUP50-203ENST00000407019 EPRSP07814 1512 aaKnown RBP24.3■■□□□ 1.48
NUP50-203ENST00000407019 UACAQ9BZF9 1416 aa24.25■■□□□ 1.47
NUP50-203ENST00000407019 TCOF1Q13428 1488 aaKnown RBP24.25■■□□□ 1.47
NUP50-203ENST00000407019 NAIPQ13075 1403 aa24.25■■□□□ 1.47
NUP50-203ENST00000407019 KIAA0586Q9BVV6 1533 aa24.24■■□□□ 1.47
NUP50-203ENST00000407019 EIF4G3O43432 1585 aaKnown RBP24.24■■□□□ 1.47
NUP50-203ENST00000407019 CDK13Q14004 1512 aaKnown RBP24.22■■□□□ 1.47
NUP50-203ENST00000407019 KIAA0556O60303 1618 aa24.21■■□□□ 1.47
NUP50-203ENST00000407019 GRIN2AQ12879 1464 aa24.2■■□□□ 1.46
NUP50-203ENST00000407019 ERCC6Q03468 1493 aa24.18■■□□□ 1.46
NUP50-203ENST00000407019 DISP1Q96F81 1524 aa24.18■■□□□ 1.46
NUP50-203ENST00000407019 MIA2Q96PC5 1412 aa24.17■■□□□ 1.46
NUP50-203ENST00000407019 PPP1R15AO75807 674 aaPredicted RBP24.14■■□□□ 1.46
NUP50-203ENST00000407019 AKNAQ7Z591 1439 aa24.13■■□□□ 1.45
NUP50-203ENST00000407019 GCC2Q8IWJ2 1684 aa24.13■■□□□ 1.45
NUP50-203ENST00000407019 MAGI1Q96QZ7 1491 aaPredicted RBP24.13■■□□□ 1.45
NUP50-203ENST00000407019 TONSLQ96HA7 1378 aa24.11■■□□□ 1.45
NUP50-203ENST00000407019 PELP1Q8IZL8 1130 aaKnown RBP24.11■■□□□ 1.45
NUP50-203ENST00000407019 RAPGEF6Q8TEU7 1601 aa24.09■■□□□ 1.45
NUP50-203ENST00000407019 ARID3CA6NKF2 412 aa24.09■■□□□ 1.45
NUP50-203ENST00000407019 NUP153P49790 1475 aaKnown RBP24.08■■□□□ 1.44
NUP50-203ENST00000407019 RRP7BPQ9NSQ0 103 aa24.06■■□□□ 1.44
NUP50-203ENST00000407019 SYNJ2O15056 1496 aa24.05■■□□□ 1.44
NUP50-203ENST00000407019 CHIC2Q9UKJ5 165 aa24.04■■□□□ 1.44
NUP50-203ENST00000407019 CEP170Q5SW79 1584 aa24.03■■□□□ 1.44
NUP50-203ENST00000407019 CHMP7Q8WUX9 453 aaPredicted RBP24.01■■□□□ 1.43
NUP50-203ENST00000407019 CDK11AQ9UQ88 783 aaPredicted RBP23.98■■□□□ 1.43
NUP50-203ENST00000407019 KDM6BO15054 1643 aa23.98■■□□□ 1.43
NUP50-203ENST00000407019 DDX10Q13206 875 aaKnown RBP23.97■■□□□ 1.43
NUP50-203ENST00000407019 DAPK1P53355 1430 aa23.96■■□□□ 1.43
NUP50-203ENST00000407019 DNMT1P26358 1616 aaKnown RBP23.95■■□□□ 1.42
NUP50-203ENST00000407019 ROCK1Q13464 1354 aa23.95■■□□□ 1.42
NUP50-203ENST00000407019 DENND4BO75064 1496 aaPredicted RBP23.94■■□□□ 1.42
NUP50-203ENST00000407019 NUP160Q12769 1436 aa23.94■■□□□ 1.42
NUP50-203ENST00000407019 TRIM52Q96A61 297 aa23.94■■□□□ 1.42
NUP50-203ENST00000407019 KDM5BQ9UGL1 1544 aa23.93■■□□□ 1.42
NUP50-203ENST00000407019 TROQ12816 1431 aaPredicted RBP23.92■■□□□ 1.42
NUP50-203ENST00000407019 CARMIL2Q6F5E8 1435 aa23.92■■□□□ 1.42
NUP50-203ENST00000407019 ABCC5O15440 1437 aa23.91■■□□□ 1.42
NUP50-203ENST00000407019 FBLN2P98095 1184 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms