RNA–Protein interactions for RNA: ENST00000401884.5

SNED1-204, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SNED1, Length 4,538 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-204ENST00000401884 CHMP7Q8WUX9 453 aaPredicted RBP24.08■■□□□ 1.44
SNED1-204ENST00000401884 TMC1Q8TDI8 760 aa24.05■■□□□ 1.44
SNED1-204ENST00000401884 KDM2AQ9Y2K7 1162 aa24.04■■□□□ 1.44
SNED1-204ENST00000401884 SALL2Q9Y467 1007 aaPredicted RBP24.01■■□□□ 1.43
SNED1-204ENST00000401884 FHAD1B1AJZ9 1412 aa24.01■■□□□ 1.43
SNED1-204ENST00000401884 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.43
SNED1-204ENST00000401884 RUSC2Q8N2Y8 1516 aa24.01■■□□□ 1.43
SNED1-204ENST00000401884 IRX6P78412 446 aaPredicted RBP24■■□□□ 1.43
SNED1-204ENST00000401884 SMARCA2P51531 1590 aa23.99■■□□□ 1.43
SNED1-204ENST00000401884 ANP32AP39687 249 aaKnown RBP23.98■■□□□ 1.43
SNED1-204ENST00000401884 CANXP27824 592 aaKnown RBP23.92■■□□□ 1.42
SNED1-204ENST00000401884 SMARCA4P51532 1647 aa23.91■■□□□ 1.42
SNED1-204ENST00000401884 RAPGEF2Q9Y4G8 1499 aa23.91■■□□□ 1.42
SNED1-204ENST00000401884 CCDC136Q96JN2 1154 aa23.9■■□□□ 1.42
SNED1-204ENST00000401884 CFDP1Q9UEE9 299 aaPredicted RBP23.89■■□□□ 1.42
SNED1-204ENST00000401884 TIMELESSQ9UNS1 1208 aa23.89■■□□□ 1.42
SNED1-204ENST00000401884 PLEKHD1A6NEE1 506 aa23.89■■□□□ 1.41
SNED1-204ENST00000401884 NPM2Q86SE8 214 aaKnown RBP23.88■■□□□ 1.41
SNED1-204ENST00000401884 ATAD2BQ9ULI0 1458 aa23.88■■□□□ 1.41
SNED1-204ENST00000401884 SETD5Q9C0A6 1442 aa23.87■■□□□ 1.41
SNED1-204ENST00000401884 CHGAP10645 457 aaKnown RBP23.84■■□□□ 1.41
SNED1-204ENST00000401884 SUPT16HQ9Y5B9 1047 aaKnown RBP23.82■■□□□ 1.4
SNED1-204ENST00000401884 RAB3GAP2Q9H2M9 1393 aa23.82■■□□□ 1.4
SNED1-204ENST00000401884 RGL3Q3MIN7 710 aa23.76■■□□□ 1.39
SNED1-204ENST00000401884 SENP3-EIF4A1A0A087X0R7 540 aa23.73■■□□□ 1.39
SNED1-204ENST00000401884 KCNH8Q96L42 1107 aa23.72■■□□□ 1.39
SNED1-204ENST00000401884 ARHGAP35Q9NRY4 1499 aa23.71■■□□□ 1.39
SNED1-204ENST00000401884 NEFMP07197 916 aa23.71■■□□□ 1.39
SNED1-204ENST00000401884 TDRD9Q8NDG6 1382 aaKnown RBP23.69■■□□□ 1.38
SNED1-204ENST00000401884 CADPSQ9ULU8 1353 aa23.68■■□□□ 1.38
SNED1-204ENST00000401884 CARD11Q9BXL7 1154 aa23.68■■□□□ 1.38
SNED1-204ENST00000401884 WDR43Q15061 677 aaKnown RBP eCLIP23.67■■□□□ 1.38
SNED1-204ENST00000401884 NPM1P06748 294 aaKnown RBP eCLIP23.67■■□□□ 1.38
SNED1-204ENST00000401884 DHX57Q6P158 1386 aaKnown RBP23.66■■□□□ 1.38
SNED1-204ENST00000401884 CCER2I3L3R5 266 aa23.65■■□□□ 1.38
SNED1-204ENST00000401884 PPP1R15AO75807 674 aaPredicted RBP23.65■■□□□ 1.38
SNED1-204ENST00000401884 BCL11AQ9H165 835 aa23.65■■□□□ 1.38
SNED1-204ENST00000401884 ZBTB47Q9UFB7 747 aaPredicted RBP23.65■■□□□ 1.38
SNED1-204ENST00000401884 EIF4G1Q04637 1599 aaKnown RBP23.62■■□□□ 1.37
SNED1-204ENST00000401884 FMN1Q68DA7 1419 aa23.61■■□□□ 1.37
SNED1-204ENST00000401884 HSPA5P11021 654 aaKnown RBP23.58■■□□□ 1.37
SNED1-204ENST00000401884 FHOD3Q2V2M9 1422 aa23.58■■□□□ 1.36
SNED1-204ENST00000401884 FOXD1Q16676 465 aa23.57■■□□□ 1.36
SNED1-204ENST00000401884 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.57■■□□□ 1.36
SNED1-204ENST00000401884 NBR1Q14596 966 aa23.54■■□□□ 1.36
SNED1-204ENST00000401884 STAG3Q9UJ98 1225 aa23.52■■□□□ 1.36
SNED1-204ENST00000401884 PPP4R2Q9NY27 417 aa23.51■■□□□ 1.35
SNED1-204ENST00000401884 MPHOSPH9Q99550 1183 aa23.51■■□□□ 1.35
SNED1-204ENST00000401884 PDS5BQ9NTI5 1447 aa23.48■■□□□ 1.35
SNED1-204ENST00000401884 ANP32EQ9BTT0 268 aa23.47■■□□□ 1.35
SNED1-204ENST00000401884 DCAF11Q8TEB1 546 aa23.47■■□□□ 1.35
SNED1-204ENST00000401884 SLC24A1O60721 1099 aa23.44■■□□□ 1.34
SNED1-204ENST00000401884 IGF1RP08069 1367 aa23.44■■□□□ 1.34
SNED1-204ENST00000401884 PKD2Q13563 968 aa23.43■■□□□ 1.34
SNED1-204ENST00000401884 B4GALNT3Q6L9W6 998 aa23.43■■□□□ 1.34
SNED1-204ENST00000401884 KNSTRNQ9Y448 316 aa23.43■■□□□ 1.34
SNED1-204ENST00000401884 ESF1Q9H501 851 aaKnown RBP23.42■■□□□ 1.34
SNED1-204ENST00000401884 ERCC6Q03468 1493 aa23.41■■□□□ 1.34
SNED1-204ENST00000401884 UPF2Q9HAU5 1272 aaKnown RBP23.41■■□□□ 1.34
SNED1-204ENST00000401884 L3MBTL2Q969R5 705 aa23.41■■□□□ 1.34
SNED1-204ENST00000401884 CDCA8Q53HL2 280 aa23.39■■□□□ 1.33
SNED1-204ENST00000401884 KIF21BO75037 1637 aa23.37■■□□□ 1.33
SNED1-204ENST00000401884 SENP3Q9H4L4 574 aaPredicted RBP23.33■■□□□ 1.33
SNED1-204ENST00000401884 CC2D1BQ5T0F9 858 aaKnown RBP23.33■■□□□ 1.32
SNED1-204ENST00000401884 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
SNED1-204ENST00000401884 RBM19Q9Y4C8 960 aaKnown RBP23.31■■□□□ 1.32
SNED1-204ENST00000401884 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
SNED1-204ENST00000401884 NUP155O75694 1391 aa23.26■■□□□ 1.31
SNED1-204ENST00000401884 TSHZ2Q9NRE2 1034 aa23.26■■□□□ 1.31
SNED1-204ENST00000401884 SYNJ1O43426 1573 aa23.26■■□□□ 1.31
SNED1-204ENST00000401884 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
SNED1-204ENST00000401884 HSP90AA1P07900 732 aaKnown RBP23.25■■□□□ 1.31
SNED1-204ENST00000401884 TMF1P82094 1093 aa23.25■■□□□ 1.31
SNED1-204ENST00000401884 CARMIL2Q6F5E8 1435 aa23.24■■□□□ 1.31
SNED1-204ENST00000401884 ARAP1Q96P48 1450 aa23.21■■□□□ 1.31
SNED1-204ENST00000401884 PHLDB1Q86UU1 1377 aa23.21■■□□□ 1.31
SNED1-204ENST00000401884 ANKRD30AQ9BXX3 1397 aa23.21■■□□□ 1.31
SNED1-204ENST00000401884 NEUROD2Q15784 382 aa23.2■■□□□ 1.3
SNED1-204ENST00000401884 ERICH6BQ5W0A0 696 aa23.18■■□□□ 1.3
SNED1-204ENST00000401884 CFAP53Q96M91 514 aa23.17■■□□□ 1.3
SNED1-204ENST00000401884 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
SNED1-204ENST00000401884 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
SNED1-204ENST00000401884 CCDC18Q5T9S5 1454 aa23.16■■□□□ 1.3
SNED1-204ENST00000401884 DDRGK1Q96HY6 314 aa23.14■■□□□ 1.3
SNED1-204ENST00000401884 JPH4Q96JJ6 628 aa23.13■■□□□ 1.29
SNED1-204ENST00000401884 PRXQ9BXM0 1461 aa23.13■■□□□ 1.29
SNED1-204ENST00000401884 LRRC9Q6ZRR7 1453 aa23.12■■□□□ 1.29
SNED1-204ENST00000401884 TNNT2P45379 298 aaPredicted RBP23.12■■□□□ 1.29
SNED1-204ENST00000401884 HNRNPMP52272 730 aaKnown RBP eCLIP23.12■■□□□ 1.29
SNED1-204ENST00000401884 ERICH3Q5RHP9 1530 aa23.11■■□□□ 1.29
SNED1-204ENST00000401884 NOP58Q9Y2X3 529 aaKnown RBP23.1■■□□□ 1.29
SNED1-204ENST00000401884 ROCK2O75116 1388 aaKnown RBP23.09■■□□□ 1.29
SNED1-204ENST00000401884 RGS3P49796 1198 aa23.09■■□□□ 1.29
SNED1-204ENST00000401884 FGD6Q6ZV73 1430 aa23.09■■□□□ 1.29
SNED1-204ENST00000401884 RRBP1Q9P2E9 1410 aaKnown RBP23.08■■□□□ 1.29
SNED1-204ENST00000401884 PRKRIP1Q9H875 184 aaPredicted RBP23.08■■□□□ 1.28
SNED1-204ENST00000401884 KTN1Q86UP2 1357 aaKnown RBP23.08■■□□□ 1.28
SNED1-204ENST00000401884 RALBP1Q15311 655 aa23.07■■□□□ 1.28
SNED1-204ENST00000401884 CFTRP13569 1480 aa23.07■■□□□ 1.28
SNED1-204ENST00000401884 GAPVD1Q14C86 1478 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms