RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 BIVM-ERCC5R4GMW8 1640 aa30.07■■■□□ 2.4
CTCF-202ENST00000401394 PHLDB1Q86UU1 1377 aa30.01■■■□□ 2.39
CTCF-202ENST00000401394 WDR97A6NE52 1622 aa30■■■□□ 2.39
CTCF-202ENST00000401394 CUX2O14529 1486 aa29.97■■■□□ 2.39
CTCF-202ENST00000401394 IGF1RP08069 1367 aa29.92■■■□□ 2.38
CTCF-202ENST00000401394 SETD5Q9C0A6 1442 aa29.9■■■□□ 2.38
CTCF-202ENST00000401394 CFTRP13569 1480 aa29.88■■■□□ 2.37
CTCF-202ENST00000401394 PPP1R15AO75807 674 aaPredicted RBP29.88■■■□□ 2.37
CTCF-202ENST00000401394 CC2D2AQ9P2K1 1620 aa29.87■■■□□ 2.37
CTCF-202ENST00000401394 ANP32EQ9BTT0 268 aa29.86■■■□□ 2.37
CTCF-202ENST00000401394 CARMIL1Q5VZK9 1371 aa29.79■■■□□ 2.36
CTCF-202ENST00000401394 IRX6P78412 446 aaPredicted RBP29.78■■■□□ 2.36
CTCF-202ENST00000401394 LRRC9Q6ZRR7 1453 aa29.77■■■□□ 2.36
CTCF-202ENST00000401394 TIAM1Q13009 1591 aa29.77■■■□□ 2.36
CTCF-202ENST00000401394 PRDM2Q13029 1718 aa29.72■■■□□ 2.35
CTCF-202ENST00000401394 FHOD3Q2V2M9 1422 aa29.7■■■□□ 2.35
CTCF-202ENST00000401394 RBM19Q9Y4C8 960 aaKnown RBP29.7■■■□□ 2.35
CTCF-202ENST00000401394 ANP32CO43423 234 aa29.67■■■□□ 2.34
CTCF-202ENST00000401394 CADPSQ9ULU8 1353 aa29.66■■■□□ 2.34
CTCF-202ENST00000401394 NEFLP07196 543 aa29.63■■■□□ 2.33
CTCF-202ENST00000401394 FGD5Q6ZNL6 1462 aa29.6■■■□□ 2.33
CTCF-202ENST00000401394 PCF11O94913 1555 aaKnown RBP29.57■■■□□ 2.32
CTCF-202ENST00000401394 TONSLQ96HA7 1378 aa29.51■■■□□ 2.31
CTCF-202ENST00000401394 HNRNPUQ00839 825 aaKnown RBP eCLIP29.5■■■□□ 2.31
CTCF-202ENST00000401394 RAD54L2Q9Y4B4 1467 aa29.5■■■□□ 2.31
CTCF-202ENST00000401394 PTPRKQ15262 1439 aa29.5■■■□□ 2.31
CTCF-202ENST00000401394 MSH5O43196 834 aa29.49■■■□□ 2.31
CTCF-202ENST00000401394 CHIC2Q9UKJ5 165 aa29.46■■■□□ 2.31
CTCF-202ENST00000401394 CCER2I3L3R5 266 aa29.45■■■□□ 2.31
CTCF-202ENST00000401394 CCDC184Q52MB2 194 aa29.45■■■□□ 2.31
CTCF-202ENST00000401394 FHAD1B1AJZ9 1412 aa29.42■■■□□ 2.3
CTCF-202ENST00000401394 ARID3CA6NKF2 412 aa29.41■■■□□ 2.3
CTCF-202ENST00000401394 RRP7BPQ9NSQ0 103 aa29.41■■■□□ 2.3
CTCF-202ENST00000401394 AQRO60306 1485 aaKnown RBP eCLIP29.41■■■□□ 2.32e-10■■■■■ 52.3
CTCF-202ENST00000401394 BCL11AQ9H165 835 aa29.4■■■□□ 2.3
CTCF-202ENST00000401394 MAP3K1Q13233 1512 aa29.4■■■□□ 2.3
CTCF-202ENST00000401394 CNGB1Q14028 1251 aaPredicted RBP29.39■■■□□ 2.29
CTCF-202ENST00000401394 FOXD1Q16676 465 aa29.37■■■□□ 2.29
CTCF-202ENST00000401394 SENP3-EIF4A1A0A087X0R7 540 aa29.36■■■□□ 2.29
CTCF-202ENST00000401394 FANCD2Q9BXW9 1451 aa29.36■■■□□ 2.29
CTCF-202ENST00000401394 CCDC18Q5T9S5 1454 aa29.34■■■□□ 2.29
CTCF-202ENST00000401394 TIMELESSQ9UNS1 1208 aa29.33■■■□□ 2.29
CTCF-202ENST00000401394 FGD6Q6ZV73 1430 aa29.32■■■□□ 2.28
CTCF-202ENST00000401394 MTUS2Q5JR59 1369 aa29.31■■■□□ 2.28
CTCF-202ENST00000401394 WASHC2AQ641Q2 1341 aa29.3■■■□□ 2.28
CTCF-202ENST00000401394 HSPA5P11021 654 aaKnown RBP29.29■■■□□ 2.28
CTCF-202ENST00000401394 CFAP43Q8NDM7 1665 aa29.28■■■□□ 2.28
CTCF-202ENST00000401394 C11orf95C9JLR9 678 aaPredicted RBP29.25■■■□□ 2.27
CTCF-202ENST00000401394 NESP48681 1621 aa29.25■■■□□ 2.27
CTCF-202ENST00000401394 FAM9BQ8IZU0 186 aa29.23■■■□□ 2.27
CTCF-202ENST00000401394 CASKIN1Q8WXD9 1431 aa29.23■■■□□ 2.27
CTCF-202ENST00000401394 LAMC3Q9Y6N6 1575 aa29.19■■■□□ 2.26
CTCF-202ENST00000401394 NAIPQ13075 1403 aa29.19■■■□□ 2.26
CTCF-202ENST00000401394 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
CTCF-202ENST00000401394 FYCO1Q9BQS8 1478 aa29.18■■■□□ 2.26
CTCF-202ENST00000401394 UACAQ9BZF9 1416 aa29.17■■■□□ 2.26
CTCF-202ENST00000401394 DNMBPQ6XZF7 1577 aa29.17■■■□□ 2.26
CTCF-202ENST00000401394 HFM1A2PYH4 1435 aa29.14■■■□□ 2.26
CTCF-202ENST00000401394 B4GALNT3Q6L9W6 998 aa29.14■■■□□ 2.26
CTCF-202ENST00000401394 POLA1P09884 1462 aaPredicted RBP29.13■■■□□ 2.25
CTCF-202ENST00000401394 KDM5BQ9UGL1 1544 aa29.13■■■□□ 2.25
CTCF-202ENST00000401394 PTPN23Q9H3S7 1636 aa29.11■■■□□ 2.25
CTCF-202ENST00000401394 TOPBP1Q92547 1522 aa29.1■■■□□ 2.25
CTCF-202ENST00000401394 NCOA2Q15596 1464 aa29.1■■■□□ 2.25
CTCF-202ENST00000401394 L3MBTL2Q969R5 705 aa29.09■■■□□ 2.25
CTCF-202ENST00000401394 CDK11AQ9UQ88 783 aaPredicted RBP29.09■■■□□ 2.25
CTCF-202ENST00000401394 SNAPC4Q5SXM2 1469 aa29.08■■■□□ 2.25
CTCF-202ENST00000401394 DNAJC5BQ9UF47 199 aa29.04■■■□□ 2.24
CTCF-202ENST00000401394 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.04■■■□□ 2.241e-6■■■■■ 32.9
CTCF-202ENST00000401394 DENND4BO75064 1496 aaPredicted RBP29.04■■■□□ 2.24
CTCF-202ENST00000401394 FMN1Q68DA7 1419 aa29.02■■■□□ 2.24
CTCF-202ENST00000401394 EIF4G2P78344 907 aaKnown RBP eCLIP29.01■■■□□ 2.24
CTCF-202ENST00000401394 MRS2Q9HD23 443 aa29.01■■■□□ 2.24
CTCF-202ENST00000401394 MYOM3Q5VTT5 1437 aa29.01■■■□□ 2.23
CTCF-202ENST00000401394 NBPF8Q3BBV2 869 aa29■■■□□ 2.23
CTCF-202ENST00000401394 POLR3GLQ9BT43 218 aa29■■■□□ 2.23
CTCF-202ENST00000401394 LRRIQ1Q96JM4 1722 aa28.99■■■□□ 2.23
CTCF-202ENST00000401394 PDS5BQ9NTI5 1447 aa28.99■■■□□ 2.23
CTCF-202ENST00000401394 KDM6BO15054 1643 aa28.99■■■□□ 2.23
CTCF-202ENST00000401394 ABCA10Q8WWZ4 1543 aa28.98■■■□□ 2.23
CTCF-202ENST00000401394 MPHOSPH9Q99550 1183 aa28.98■■■□□ 2.23
CTCF-202ENST00000401394 PRKRIP1Q9H875 184 aaPredicted RBP28.96■■■□□ 2.23
CTCF-202ENST00000401394 MAGI3Q5TCQ9 1506 aa28.96■■■□□ 2.23
CTCF-202ENST00000401394 URB2Q14146 1524 aaKnown RBP28.94■■■□□ 2.22
CTCF-202ENST00000401394 EFCAB5A4FU69 1503 aa28.94■■■□□ 2.22
CTCF-202ENST00000401394 ERICH6Q7L0X2 663 aa28.93■■■□□ 2.22
CTCF-202ENST00000401394 ZNF644Q9H582 1327 aaPredicted RBP28.88■■■□□ 2.21
CTCF-202ENST00000401394 PPP4R2Q9NY27 417 aa28.88■■■□□ 2.21
CTCF-202ENST00000401394 ZNF326Q5BKZ1 582 aaKnown RBP28.87■■■□□ 2.21
CTCF-202ENST00000401394 FANCIQ9NVI1 1328 aa28.86■■■□□ 2.21
CTCF-202ENST00000401394 GRIN2BQ13224 1484 aa28.85■■■□□ 2.21
CTCF-202ENST00000401394 KIF21AQ7Z4S6 1674 aa28.84■■■□□ 2.21
CTCF-202ENST00000401394 CNTLNQ9NXG0 1405 aa28.84■■■□□ 2.21
CTCF-202ENST00000401394 CCDC7Q96M83 1385 aa28.84■■■□□ 2.21
CTCF-202ENST00000401394 CTTNBP2Q8WZ74 1663 aa28.84■■■□□ 2.21
CTCF-202ENST00000401394 KIF7Q2M1P5 1343 aa28.81■■■□□ 2.2
CTCF-202ENST00000401394 CUL7Q14999 1698 aa28.76■■■□□ 2.2
CTCF-202ENST00000401394 AKNAQ7Z591 1439 aa28.76■■■□□ 2.2
CTCF-202ENST00000401394 CDK13Q14004 1512 aaKnown RBP28.76■■■□□ 2.19
CTCF-202ENST00000401394 PAK3O75914 559 aaPredicted RBP28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms