RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ASTLQ6HA08 431 aaPredicted RBP11.38□□□□□ -0.59
HMGB1-204ENST00000399489 ST18O60284 1047 aa11.36□□□□□ -0.59
HMGB1-204ENST00000399489 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-204ENST00000399489 SSUH2Q9Y2M2 353 aa11.35□□□□□ -0.59
HMGB1-204ENST00000399489 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
HMGB1-204ENST00000399489 TMEM121BQ9BXQ6 578 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-204ENST00000399489 PABPN1Q86U42 306 aaKnown RBP eCLIP11.16□□□□□ -0.62
HMGB1-204ENST00000399489 PHF12Q96QT6 1004 aa11.15□□□□□ -0.63
HMGB1-204ENST00000399489 POTEFA5A3E0 1075 aa11.11□□□□□ -0.63
HMGB1-204ENST00000399489 PAK3O75914 559 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-204ENST00000399489 SPDYE4A6NLX3 237 aa11.05□□□□□ -0.64
HMGB1-204ENST00000399489 KRTAP3-3Q9BYR6 98 aa11□□□□□ -0.65
HMGB1-204ENST00000399489 KRTAP3-2Q9BYR7 98 aa11□□□□□ -0.65
HMGB1-204ENST00000399489 STAG3Q9UJ98 1225 aa10.99□□□□□ -0.65
HMGB1-204ENST00000399489 SLAIN1Q8ND83 568 aa10.98□□□□□ -0.65
HMGB1-204ENST00000399489 ATN1P54259 1190 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-204ENST00000399489 MS4A3Q96HJ5 214 aa10.98□□□□□ -0.65
HMGB1-204ENST00000399489 MARVELD3Q96A59 401 aa10.89□□□□□ -0.67
HMGB1-204ENST00000399489 RNF166Q96A37 237 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-204ENST00000399489 SNPHO15079 494 aa10.86□□□□□ -0.67
HMGB1-204ENST00000399489 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
HMGB1-204ENST00000399489 COLQQ9Y215 455 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-204ENST00000399489 SEC24BO95487 1268 aa10.78□□□□□ -0.68
HMGB1-204ENST00000399489 HS3ST6Q96QI5 342 aa10.72□□□□□ -0.69
HMGB1-204ENST00000399489 EMP3P54852 163 aa10.72□□□□□ -0.69
HMGB1-204ENST00000399489 PROM2Q8N271 834 aa10.72□□□□□ -0.69
HMGB1-204ENST00000399489 BMP2KQ9NSY1 1161 aaPredicted RBP10.7□□□□□ -0.7
HMGB1-204ENST00000399489 POTEB3A0JP26 581 aa10.7□□□□□ -0.7
HMGB1-204ENST00000399489 POTEBQ6S5H4 581 aa10.7□□□□□ -0.7
HMGB1-204ENST00000399489 NPM1P06748 294 aaKnown RBP eCLIP10.68□□□□□ -0.7
HMGB1-204ENST00000399489 PLEKHG5O94827 1062 aa10.66□□□□□ -0.7
HMGB1-204ENST00000399489 FKBP8Q14318 412 aa10.65□□□□□ -0.7
HMGB1-204ENST00000399489 IER5LQ5T953 404 aa10.63□□□□□ -0.71
HMGB1-204ENST00000399489 TIE1P35590 1138 aa10.62□□□□□ -0.71
HMGB1-204ENST00000399489 MYT1LQ9UL68 1186 aa10.62□□□□□ -0.71
HMGB1-204ENST00000399489 FAM205CA6NFA0 338 aa10.6□□□□□ -0.71
HMGB1-204ENST00000399489 MIER1Q8N108 512 aa10.56□□□□□ -0.72
HMGB1-204ENST00000399489 PLCD3Q8N3E9 789 aa10.53□□□□□ -0.72
HMGB1-204ENST00000399489 MNX1P50219 401 aaPredicted RBP10.5□□□□□ -0.73
HMGB1-204ENST00000399489 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
HMGB1-204ENST00000399489 FBXO3Q9UK99 471 aa10.48□□□□□ -0.73
HMGB1-204ENST00000399489 TRPC6Q9Y210 931 aa10.46□□□□□ -0.74
HMGB1-204ENST00000399489 TTLL13PA6NNM8 815 aa10.44□□□□□ -0.74
HMGB1-204ENST00000399489 PTGER2P43116 358 aa10.42□□□□□ -0.74
HMGB1-204ENST00000399489 KIF12Q96FN5 646 aa10.42□□□□□ -0.74
HMGB1-204ENST00000399489 PLA2G2EQ9NZK7 142 aa10.41□□□□□ -0.74
HMGB1-204ENST00000399489 TSPYL2Q9H2G4 693 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-204ENST00000399489 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.39□□□□□ -0.75
HMGB1-204ENST00000399489 TRIM35Q9UPQ4 493 aa10.36□□□□□ -0.75
HMGB1-204ENST00000399489 CCDC61Q9Y6R9 512 aa10.35□□□□□ -0.75
HMGB1-204ENST00000399489 PLCG2P16885 1265 aa10.34□□□□□ -0.75
HMGB1-204ENST00000399489 RASEFQ8IZ41 740 aa10.29□□□□□ -0.76
HMGB1-204ENST00000399489 IRX2Q9BZI1 471 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-204ENST00000399489 FAM212AQ96EL1 285 aa10.28□□□□□ -0.76
HMGB1-204ENST00000399489 KLHL34Q8N239 644 aa10.27□□□□□ -0.77
HMGB1-204ENST00000399489 VASPP50552 380 aaPredicted RBP10.26□□□□□ -0.77
HMGB1-204ENST00000399489 NUBP1P53384 320 aa10.24□□□□□ -0.77
HMGB1-204ENST00000399489 RGS20O76081 388 aa10.21□□□□□ -0.78
HMGB1-204ENST00000399489 MAP3K13O43283 966 aa10.2□□□□□ -0.78
HMGB1-204ENST00000399489 IRX5P78411 483 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-204ENST00000399489 DCAF8Q5TAQ9 597 aa10.2□□□□□ -0.78
HMGB1-204ENST00000399489 SGIP1Q9BQI5 828 aa10.18□□□□□ -0.78
HMGB1-204ENST00000399489 PCDHB13Q9Y5F0 798 aa10.16□□□□□ -0.78
HMGB1-204ENST00000399489 GSE1Q14687 1217 aa10.14□□□□□ -0.79
HMGB1-204ENST00000399489 LOC100996750A0A140TA64 210 aa10.12□□□□□ -0.79
HMGB1-204ENST00000399489 KRTAP4-6Q9BYQ5 205 aa10.12□□□□□ -0.79
HMGB1-204ENST00000399489 ERBB3P21860 1342 aa10.11□□□□□ -0.79
HMGB1-204ENST00000399489 OCEL1Q9H607 264 aa10.1□□□□□ -0.79
HMGB1-204ENST00000399489 SPOCK2Q92563 424 aa10.08□□□□□ -0.8
HMGB1-204ENST00000399489 HOXB1P14653 301 aaPredicted RBP10.07□□□□□ -0.8
HMGB1-204ENST00000399489 PYGBP11216 843 aa10.06□□□□□ -0.8
HMGB1-204ENST00000399489 HCSTQ9UBK5 93 aa10.05□□□□□ -0.8
HMGB1-204ENST00000399489 IFNL1Q8IU54 200 aa10.04□□□□□ -0.8
HMGB1-204ENST00000399489 IFNLR1Q8IU57 520 aaPredicted RBP10.02□□□□□ -0.8
HMGB1-204ENST00000399489 ZNF687Q8N1G0 1237 aa10.01□□□□□ -0.81
HMGB1-204ENST00000399489 TMEM106CQ9BVX2 250 aa10.01□□□□□ -0.81
HMGB1-204ENST00000399489 CIZ1Q9ULV3 898 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-204ENST00000399489 C3orf67Q6ZVT6 689 aa10□□□□□ -0.81
HMGB1-204ENST00000399489 ZNF467Q7Z7K2 595 aaPredicted RBP10□□□□□ -0.81
HMGB1-204ENST00000399489 CHRM1P11229 460 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-204ENST00000399489 PCDHB8Q9UN66 801 aa9.96□□□□□ -0.82
HMGB1-204ENST00000399489 VARS2Q5ST30 1063 aaKnown RBP9.95□□□□□ -0.82
HMGB1-204ENST00000399489 TRIM41Q8WV44 630 aa9.93□□□□□ -0.82
HMGB1-204ENST00000399489 HOXB3P14651 431 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-204ENST00000399489 GOLGA2Q08379 1002 aa9.91□□□□□ -0.82
HMGB1-204ENST00000399489 Q6ZNB5 142 aa9.9□□□□□ -0.83
HMGB1-204ENST00000399489 ANKRD13DQ6ZTN6 518 aa9.87□□□□□ -0.83
HMGB1-204ENST00000399489 ZNF710Q8N1W2 664 aa9.87□□□□□ -0.83
HMGB1-204ENST00000399489 PSEN1P49768 467 aa9.86□□□□□ -0.83
HMGB1-204ENST00000399489 PDAP1Q13442 181 aaKnown RBP9.85□□□□□ -0.83
HMGB1-204ENST00000399489 L3MBTL3Q96JM7 780 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-204ENST00000399489 MKRN3Q13064 507 aaKnown RBP9.85□□□□□ -0.83
HMGB1-204ENST00000399489 DOK7Q18PE1 504 aa9.77□□□□□ -0.85
HMGB1-204ENST00000399489 IFFO2Q5TF58 517 aa9.76□□□□□ -0.85
HMGB1-204ENST00000399489 LSM11P83369 360 aaKnown RBP eCLIP9.74□□□□□ -0.85
HMGB1-204ENST00000399489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.74□□□□□ -0.856e-7■■□□□ 13.1
HMGB1-204ENST00000399489 TAOK2Q9UL54 1235 aa9.74□□□□□ -0.85
HMGB1-204ENST00000399489 CABP2Q9NPB3 220 aa9.73□□□□□ -0.85
HMGB1-204ENST00000399489 RIOK3O14730 519 aaKnown RBP9.72□□□□□ -0.85
HMGB1-204ENST00000399489 PDCD7Q8N8D1 485 aaKnown RBP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms