RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ZNF622Q969S3 477 aaKnown RBP eCLIP4.7□□□□□ -1.668e-11■■■■■ 55.4
HMGB1-204ENST00000399489 U2AF2P26368 475 aaKnown RBP eCLIP3.86□□□□□ -1.791e-7■■■■■ 37.5
HMGB1-204ENST00000399489 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.78□□□□□ -1.83e-7■■■■□ 26.4
HMGB1-204ENST00000399489 AQRO60306 1485 aaKnown RBP eCLIP3.9□□□□□ -1.782e-9■■■■□ 24.4
HMGB1-204ENST00000399489 AGGF1Q8N302 714 aaeCLIP6.19□□□□□ -1.424e-7■■■■□ 23
HMGB1-204ENST00000399489 U2AF1Q01081 240 aaKnown RBP eCLIP5.03□□□□□ -1.63e-11■■■■□ 22.7
HMGB1-204ENST00000399489 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.85□□□□□ -2.111e-6■■■■□ 22.6
HMGB1-204ENST00000399489 TIAL1Q01085 375 aaKnown RBP eCLIP4.17□□□□□ -1.743e-6■■■■□ 21.9
HMGB1-204ENST00000399489 TRA2AQ13595 282 aaKnown RBP eCLIP4.22□□□□□ -1.733e-6■■■■□ 20.9
HMGB1-204ENST00000399489 SRSF7Q16629 238 aaKnown RBP eCLIP4.02□□□□□ -1.771e-10■■■■□ 20
HMGB1-204ENST00000399489 SF3B4Q15427 424 aaKnown RBP eCLIP3.59□□□□□ -1.831e-8■■■□□ 19.1
HMGB1-204ENST00000399489 PUM1Q14671 1186 aaKnown RBP eCLIP4.96□□□□□ -1.621e-7■■■□□ 17.8
HMGB1-204ENST00000399489 SUB1P53999 127 aaKnown RBP eCLIP3.3□□□□□ -1.885e-8■■■□□ 15
HMGB1-204ENST00000399489 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.12□□□□□ -0.152e-7■■□□□ 14.5
HMGB1-204ENST00000399489 EFTUD2Q15029 972 aaKnown RBP eCLIP4.04□□□□□ -1.765e-16■■□□□ 13.9
HMGB1-204ENST00000399489 SF3B1O75533 1304 aaKnown RBP eCLIP3.91□□□□□ -1.784e-8■■□□□ 13.3
HMGB1-204ENST00000399489 DDX3XO00571 662 aaKnown RBP eCLIP4.92□□□□□ -1.629e-10■■□□□ 13.2
HMGB1-204ENST00000399489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.74□□□□□ -0.856e-7■■□□□ 13.1
HMGB1-204ENST00000399489 SRSF1Q07955 248 aaKnown RBP eCLIP3.62□□□□□ -1.836e-14■■□□□ 12.8
HMGB1-204ENST00000399489 YBX3P16989 372 aaKnown RBP eCLIP7.17□□□□□ -1.266e-17■■□□□ 12.5
HMGB1-204ENST00000399489 RPS3P23396 243 aaKnown RBP eCLIP2.96□□□□□ -1.949e-18■■□□□ 12.1
HMGB1-204ENST00000399489 CPSF6Q16630 551 aaKnown RBP eCLIP6.02□□□□□ -1.453e-18■■□□□ 11.5
HMGB1-204ENST00000399489 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.53□□□□□ -1.852e-6■□□□□ 10.8
HMGB1-204ENST00000399489 HNRNPCP07910 306 aaKnown RBP eCLIP4.73□□□□□ -1.654e-6■□□□□ 10.4
HMGB1-204ENST00000399489 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.5□□□□□ -1.536e-8■□□□□ 10.3
HMGB1-204ENST00000399489 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.94□□□□□ -1.784e-6■□□□□ 9.4
HMGB1-204ENST00000399489 KHSRPQ92945 711 aaKnown RBP eCLIP9.08□□□□□ -0.962e-8■□□□□ 8.9
HMGB1-204ENST00000399489 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.06□□□□□ -1.68e-6■□□□□ 8.4
Retrieved 28 of 28 RNA–protein pairs in 7 ms