RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
HMGB1-204ENST00000399489 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.19
HMGB1-204ENST00000399489 POTEDQ86YR6 584 aa21.79■■□□□ 1.08
HMGB1-204ENST00000399489 SENP3Q9H4L4 574 aaPredicted RBP20.84■□□□□ 0.93
HMGB1-204ENST00000399489 PHF23Q9BUL5 403 aaPredicted RBP20.24■□□□□ 0.83
HMGB1-204ENST00000399489 FOXD1Q16676 465 aa19.56■□□□□ 0.72
HMGB1-204ENST00000399489 MSH5O43196 834 aa19.15■□□□□ 0.66
HMGB1-204ENST00000399489 PIAS4Q8N2W9 510 aaPredicted RBP17.81■□□□□ 0.44
HMGB1-204ENST00000399489 CACNB1Q02641 598 aaPredicted RBP17.5■□□□□ 0.39
HMGB1-204ENST00000399489 PPP6R1Q9UPN7 881 aa16.79■□□□□ 0.28
HMGB1-204ENST00000399489 POTEHQ6S545 545 aa16.71■□□□□ 0.27
HMGB1-204ENST00000399489 ADRA2BP18089 450 aa16.62■□□□□ 0.25
HMGB1-204ENST00000399489 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
HMGB1-204ENST00000399489 RNF39Q9H2S5 420 aa16.11■□□□□ 0.17
HMGB1-204ENST00000399489 PLPPR3Q6T4P5 718 aa15.99■□□□□ 0.15
HMGB1-204ENST00000399489 C1QBPQ07021 282 aaKnown RBP15.83■□□□□ 0.13
HMGB1-204ENST00000399489 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
HMGB1-204ENST00000399489 DCAF8L1A6NGE4 600 aa15.51■□□□□ 0.07
HMGB1-204ENST00000399489 SCAF1Q9H7N4 1312 aaKnown RBP15.38■□□□□ 0.05
HMGB1-204ENST00000399489 DNAJC5BQ9UF47 199 aa14.92□□□□□ -0.02
HMGB1-204ENST00000399489 HOXD11P31277 338 aaPredicted RBP14.92□□□□□ -0.02
HMGB1-204ENST00000399489 SP7Q8TDD2 431 aaPredicted RBP14.8□□□□□ -0.04
HMGB1-204ENST00000399489 PLSCR2Q9NRY7 297 aa14.47□□□□□ -0.09
HMGB1-204ENST00000399489 DSG3P32926 999 aa14.44□□□□□ -0.1
HMGB1-204ENST00000399489 RNF216Q9NWF9 866 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-204ENST00000399489 CHRDL2Q6WN34 429 aa14.27□□□□□ -0.13
HMGB1-204ENST00000399489 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.12□□□□□ -0.152e-7■■□□□ 14.5
HMGB1-204ENST00000399489 CAPN15O75808 1086 aa14.01□□□□□ -0.17
HMGB1-204ENST00000399489 PPP4R3CPQ6ZMV5 832 aa14.01□□□□□ -0.17
HMGB1-204ENST00000399489 CNKSR2Q8WXI2 1034 aa13.93□□□□□ -0.18
HMGB1-204ENST00000399489 SPINK5Q9NQ38 1064 aaPredicted RBP13.93□□□□□ -0.18
HMGB1-204ENST00000399489 RBM42Q9BTD8 480 aaKnown RBP13.92□□□□□ -0.18
HMGB1-204ENST00000399489 LHX8Q68G74 356 aa13.84□□□□□ -0.19
HMGB1-204ENST00000399489 HAX1O00165 279 aa13.75□□□□□ -0.21
HMGB1-204ENST00000399489 NCBP3Q53F19 620 aaKnown RBP13.63□□□□□ -0.23
HMGB1-204ENST00000399489 U3KPZ7 1027 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-204ENST00000399489 PIP4P2Q8N4L2 257 aa13.5□□□□□ -0.25
HMGB1-204ENST00000399489 ABCB7O75027 752 aa13.47□□□□□ -0.25
HMGB1-204ENST00000399489 EVX2Q03828 476 aa13.39□□□□□ -0.27
HMGB1-204ENST00000399489 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-204ENST00000399489 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
HMGB1-204ENST00000399489 NPM3O75607 178 aaKnown RBP13.27□□□□□ -0.28
HMGB1-204ENST00000399489 APLP2Q06481 763 aa13.19□□□□□ -0.3
HMGB1-204ENST00000399489 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
HMGB1-204ENST00000399489 PCDH10Q9P2E7 1040 aa13.18□□□□□ -0.3
HMGB1-204ENST00000399489 AKT1S1Q96B36 256 aa13.17□□□□□ -0.3
HMGB1-204ENST00000399489 KCNA4P22459 653 aa13.14□□□□□ -0.31
HMGB1-204ENST00000399489 POTEMA6NI47 508 aa13.11□□□□□ -0.31
HMGB1-204ENST00000399489 GABBR2O75899 941 aa13.06□□□□□ -0.32
HMGB1-204ENST00000399489 POTEGQ6S5H5 508 aa13.01□□□□□ -0.33
HMGB1-204ENST00000399489 REM2Q8IYK8 340 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-204ENST00000399489 PITPNM1O00562 1244 aa12.84□□□□□ -0.35
HMGB1-204ENST00000399489 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
HMGB1-204ENST00000399489 POTEIP0CG38 1075 aa12.74□□□□□ -0.37
HMGB1-204ENST00000399489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-204ENST00000399489 HNRNPUL2Q1KMD3 747 aaKnown RBP12.7□□□□□ -0.38
HMGB1-204ENST00000399489 OTUD5Q96G74 571 aa12.63□□□□□ -0.39
HMGB1-204ENST00000399489 SLC4A2P04920 1241 aa12.59□□□□□ -0.39
HMGB1-204ENST00000399489 POLA2Q14181 598 aa12.56□□□□□ -0.4
HMGB1-204ENST00000399489 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
HMGB1-204ENST00000399489 SAMD1Q6SPF0 538 aaPredicted RBP12.5□□□□□ -0.41
HMGB1-204ENST00000399489 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
HMGB1-204ENST00000399489 CLCN6P51797 869 aa12.4□□□□□ -0.42
HMGB1-204ENST00000399489 MYCNP04198 464 aaPredicted RBP12.37□□□□□ -0.43
HMGB1-204ENST00000399489 DCBLD2Q96PD2 775 aa12.31□□□□□ -0.44
HMGB1-204ENST00000399489 FOXD4L1Q9NU39 408 aa12.31□□□□□ -0.44
HMGB1-204ENST00000399489 ZBTB12Q9Y330 459 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-204ENST00000399489 POTEB2H3BUK9 544 aa12.25□□□□□ -0.45
HMGB1-204ENST00000399489 LCE2DQ5TA82 110 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-204ENST00000399489 OSCARQ8IYS5 282 aa12.2□□□□□ -0.46
HMGB1-204ENST00000399489 CDAN1Q8IWY9 1227 aa12.09□□□□□ -0.47
HMGB1-204ENST00000399489 FAM163AQ96GL9 167 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-204ENST00000399489 MMRN1Q13201 1228 aa12.03□□□□□ -0.48
HMGB1-204ENST00000399489 ZBTB22O15209 634 aa12.02□□□□□ -0.49
HMGB1-204ENST00000399489 CD44P16070 742 aaKnown RBP11.98□□□□□ -0.49
HMGB1-204ENST00000399489 SPDYE1Q8NFV5 336 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-204ENST00000399489 ATXN8OSP0DMR3 200 aa11.94□□□□□ -0.5
HMGB1-204ENST00000399489 MAMSTRQ6ZN01 415 aa11.93□□□□□ -0.5
HMGB1-204ENST00000399489 CLEC11AQ9Y240 323 aa11.92□□□□□ -0.5
HMGB1-204ENST00000399489 ATF5Q9Y2D1 282 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-204ENST00000399489 CHADLQ6NUI6 762 aa11.88□□□□□ -0.51
HMGB1-204ENST00000399489 SPNS2Q8IVW8 549 aa11.86□□□□□ -0.51
HMGB1-204ENST00000399489 ZNF579Q8NAF0 562 aaKnown RBP11.78□□□□□ -0.52
HMGB1-204ENST00000399489 POTEJP0CG39 1038 aa11.76□□□□□ -0.53
HMGB1-204ENST00000399489 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
HMGB1-204ENST00000399489 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
HMGB1-204ENST00000399489 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
HMGB1-204ENST00000399489 SCUBE2Q9NQ36 999 aa11.69□□□□□ -0.54
HMGB1-204ENST00000399489 EHMT2Q96KQ7 1210 aa11.67□□□□□ -0.54
HMGB1-204ENST00000399489 GALR2O43603 387 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-204ENST00000399489 CSRNP3Q8WYN3 585 aa11.66□□□□□ -0.54
HMGB1-204ENST00000399489 FBLN2P98095 1184 aa11.66□□□□□ -0.54
HMGB1-204ENST00000399489 PELP1Q8IZL8 1130 aaKnown RBP11.61□□□□□ -0.55
HMGB1-204ENST00000399489 FARP1Q9Y4F1 1045 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-204ENST00000399489 METRNQ9UJH8 293 aa11.59□□□□□ -0.55
HMGB1-204ENST00000399489 C7P10643 843 aa11.56□□□□□ -0.56
HMGB1-204ENST00000399489 PRR29P0C7W0 189 aa11.53□□□□□ -0.56
HMGB1-204ENST00000399489 SLC39A7Q92504 469 aa11.53□□□□□ -0.56
HMGB1-204ENST00000399489 ZRANB1Q9UGI0 708 aa11.52□□□□□ -0.57
HMGB1-204ENST00000399489 MKRN4PQ13434 485 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms