RNA–Protein interactions for RNA: ENST00000398844.6

SEC24A-202, Transcript of SEC24 homolog A, COPII coat complex component, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SEC24A, Length 6,299 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC24A-202ENST00000398844 CHMP7Q8WUX9 453 aaPredicted RBP12.62□□□□□ -0.39
SEC24A-202ENST00000398844 SALL2Q9Y467 1007 aaPredicted RBP12.62□□□□□ -0.39
SEC24A-202ENST00000398844 HNRNPUQ00839 825 aaKnown RBP eCLIP12.62□□□□□ -0.39
SEC24A-202ENST00000398844 SYNJ1O43426 1573 aa12.6□□□□□ -0.39
SEC24A-202ENST00000398844 CCNB3Q8WWL7 1395 aa12.59□□□□□ -0.39
SEC24A-202ENST00000398844 UNC13AQ9UPW8 1703 aa12.59□□□□□ -0.39
SEC24A-202ENST00000398844 CDK11AQ9UQ88 783 aaPredicted RBP12.57□□□□□ -0.4
SEC24A-202ENST00000398844 FOXD1Q16676 465 aa12.56□□□□□ -0.4
SEC24A-202ENST00000398844 TDRD9Q8NDG6 1382 aaKnown RBP12.54□□□□□ -0.4
SEC24A-202ENST00000398844 FHOD3Q2V2M9 1422 aa12.54□□□□□ -0.4
SEC24A-202ENST00000398844 KCNH8Q96L42 1107 aa12.53□□□□□ -0.4
SEC24A-202ENST00000398844 ERCC6Q03468 1493 aa12.51□□□□□ -0.41
SEC24A-202ENST00000398844 RAB3GAP2Q9H2M9 1393 aa12.51□□□□□ -0.41
SEC24A-202ENST00000398844 CHGAP10645 457 aaKnown RBP12.49□□□□□ -0.41
SEC24A-202ENST00000398844 BCL11AQ9H165 835 aa12.49□□□□□ -0.41
SEC24A-202ENST00000398844 ARHGAP35Q9NRY4 1499 aa12.49□□□□□ -0.41
SEC24A-202ENST00000398844 DAXXQ9UER7 740 aaPredicted RBP12.48□□□□□ -0.41
SEC24A-202ENST00000398844 KIF21BO75037 1637 aa12.47□□□□□ -0.41
SEC24A-202ENST00000398844 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
SEC24A-202ENST00000398844 RAD54L2Q9Y4B4 1467 aa12.47□□□□□ -0.41
SEC24A-202ENST00000398844 MYT1Q01538 1121 aa12.46□□□□□ -0.41
SEC24A-202ENST00000398844 NPM2Q86SE8 214 aaKnown RBP12.46□□□□□ -0.41
SEC24A-202ENST00000398844 MRS2Q9HD23 443 aa12.46□□□□□ -0.41
SEC24A-202ENST00000398844 RGL3Q3MIN7 710 aa12.46□□□□□ -0.42
SEC24A-202ENST00000398844 PLPPR3Q6T4P5 718 aa12.46□□□□□ -0.42
SEC24A-202ENST00000398844 CLSPNQ9HAW4 1339 aa12.45□□□□□ -0.42
SEC24A-202ENST00000398844 CADPSQ9ULU8 1353 aa12.44□□□□□ -0.42
SEC24A-202ENST00000398844 FHAD1B1AJZ9 1412 aa12.44□□□□□ -0.42
SEC24A-202ENST00000398844 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
SEC24A-202ENST00000398844 EIF4G2P78344 907 aaKnown RBP eCLIP12.42□□□□□ -0.42
SEC24A-202ENST00000398844 FGD5Q6ZNL6 1462 aa12.42□□□□□ -0.42
SEC24A-202ENST00000398844 CFDP1Q9UEE9 299 aaPredicted RBP12.42□□□□□ -0.42
SEC24A-202ENST00000398844 BICRAQ9NZM4 1560 aa12.42□□□□□ -0.42
SEC24A-202ENST00000398844 DHX57Q6P158 1386 aaKnown RBP12.4□□□□□ -0.42
SEC24A-202ENST00000398844 TSPY4P0CV99 314 aa12.4□□□□□ -0.42
SEC24A-202ENST00000398844 TSPY10P0CW01 314 aa12.4□□□□□ -0.42
SEC24A-202ENST00000398844 SUPT16HQ9Y5B9 1047 aaKnown RBP12.39□□□□□ -0.43
SEC24A-202ENST00000398844 TMC1Q8TDI8 760 aa12.37□□□□□ -0.43
SEC24A-202ENST00000398844 PLEKHD1A6NEE1 506 aa12.37□□□□□ -0.43
SEC24A-202ENST00000398844 CUX1P39880 1505 aa12.37□□□□□ -0.43
SEC24A-202ENST00000398844 CANXP27824 592 aaKnown RBP12.37□□□□□ -0.43
SEC24A-202ENST00000398844 NESP48681 1621 aa12.37□□□□□ -0.43
SEC24A-202ENST00000398844 ARAP1Q96P48 1450 aa12.36□□□□□ -0.43
SEC24A-202ENST00000398844 HSPA5P11021 654 aaKnown RBP12.35□□□□□ -0.43
SEC24A-202ENST00000398844 TOP2BQ02880 1626 aa12.34□□□□□ -0.43
SEC24A-202ENST00000398844 IGF1RP08069 1367 aa12.33□□□□□ -0.44
SEC24A-202ENST00000398844 PDS5BQ9NTI5 1447 aa12.32□□□□□ -0.44
SEC24A-202ENST00000398844 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
SEC24A-202ENST00000398844 RTL5Q5HYW3 569 aaPredicted RBP12.31□□□□□ -0.44
SEC24A-202ENST00000398844 CARD11Q9BXL7 1154 aa12.31□□□□□ -0.44
SEC24A-202ENST00000398844 PRDM2Q13029 1718 aa12.3□□□□□ -0.44
SEC24A-202ENST00000398844 CC2D1BQ5T0F9 858 aaKnown RBP12.29□□□□□ -0.44
SEC24A-202ENST00000398844 SLC24A1O60721 1099 aa12.28□□□□□ -0.44
SEC24A-202ENST00000398844 NBR1Q14596 966 aa12.28□□□□□ -0.44
SEC24A-202ENST00000398844 PHLDB1Q86UU1 1377 aa12.28□□□□□ -0.44
SEC24A-202ENST00000398844 FMN1Q68DA7 1419 aa12.28□□□□□ -0.44
SEC24A-202ENST00000398844 MPHOSPH9Q99550 1183 aa12.28□□□□□ -0.44
SEC24A-202ENST00000398844 DCAF11Q8TEB1 546 aa12.27□□□□□ -0.45
SEC24A-202ENST00000398844 NCAPD3P42695 1498 aa12.26□□□□□ -0.45
SEC24A-202ENST00000398844 CCDC136Q96JN2 1154 aa12.26□□□□□ -0.45
SEC24A-202ENST00000398844 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
SEC24A-202ENST00000398844 AQRO60306 1485 aaKnown RBP eCLIP12.24□□□□□ -0.451e-6■■■■■ 32
SEC24A-202ENST00000398844 HNRNPMP52272 730 aaKnown RBP eCLIP12.24□□□□□ -0.45
SEC24A-202ENST00000398844 PKD2Q13563 968 aa12.24□□□□□ -0.45
SEC24A-202ENST00000398844 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
SEC24A-202ENST00000398844 WDR43Q15061 677 aaKnown RBP eCLIP12.22□□□□□ -0.45
SEC24A-202ENST00000398844 ANP32AP39687 249 aaKnown RBP12.22□□□□□ -0.45
SEC24A-202ENST00000398844 LRRC9Q6ZRR7 1453 aa12.22□□□□□ -0.45
SEC24A-202ENST00000398844 GAPVD1Q14C86 1478 aa12.22□□□□□ -0.45
SEC24A-202ENST00000398844 CFTRP13569 1480 aa12.22□□□□□ -0.45
SEC24A-202ENST00000398844 PPP1R15AO75807 674 aaPredicted RBP12.22□□□□□ -0.45
SEC24A-202ENST00000398844 B4GALNT3Q6L9W6 998 aa12.21□□□□□ -0.46
SEC24A-202ENST00000398844 CCDC18Q5T9S5 1454 aa12.2□□□□□ -0.46
SEC24A-202ENST00000398844 ERICH3Q5RHP9 1530 aa12.2□□□□□ -0.46
SEC24A-202ENST00000398844 TNNT2P45379 298 aaPredicted RBP12.2□□□□□ -0.46
SEC24A-202ENST00000398844 L3MBTL2Q969R5 705 aa12.19□□□□□ -0.46
SEC24A-202ENST00000398844 ZNF644Q9H582 1327 aaPredicted RBP12.19□□□□□ -0.46
SEC24A-202ENST00000398844 DNAJC5BQ9UF47 199 aa12.18□□□□□ -0.46
SEC24A-202ENST00000398844 PRXQ9BXM0 1461 aa12.16□□□□□ -0.46
SEC24A-202ENST00000398844 PLEKHG5O94827 1062 aa12.16□□□□□ -0.46
SEC24A-202ENST00000398844 HMGXB3Q12766 1538 aa12.16□□□□□ -0.46
SEC24A-202ENST00000398844 PCF11O94913 1555 aaKnown RBP12.14□□□□□ -0.47
SEC24A-202ENST00000398844 NUP155O75694 1391 aa12.13□□□□□ -0.47
SEC24A-202ENST00000398844 NEUROD2Q15784 382 aa12.13□□□□□ -0.47
SEC24A-202ENST00000398844 TIAM1Q13009 1591 aa12.12□□□□□ -0.47
SEC24A-202ENST00000398844 TOPBP1Q92547 1522 aa12.12□□□□□ -0.47
SEC24A-202ENST00000398844 FGD6Q6ZV73 1430 aa12.12□□□□□ -0.47
SEC24A-202ENST00000398844 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
SEC24A-202ENST00000398844 POLA1P09884 1462 aaPredicted RBP12.11□□□□□ -0.47
SEC24A-202ENST00000398844 RRBP1Q9P2E9 1410 aaKnown RBP12.11□□□□□ -0.47
SEC24A-202ENST00000398844 NCOA2Q15596 1464 aa12.11□□□□□ -0.47
SEC24A-202ENST00000398844 ROCK2O75116 1388 aaKnown RBP12.11□□□□□ -0.47
SEC24A-202ENST00000398844 CARMIL2Q6F5E8 1435 aa12.1□□□□□ -0.47
SEC24A-202ENST00000398844 CCER2I3L3R5 266 aa12.1□□□□□ -0.47
SEC24A-202ENST00000398844 ESF1Q9H501 851 aaKnown RBP12.1□□□□□ -0.47
SEC24A-202ENST00000398844 NUTM2DQ5VT03 806 aaPredicted RBP12.1□□□□□ -0.47
SEC24A-202ENST00000398844 SAFB2Q14151 953 aaKnown RBP eCLIP12.1□□□□□ -0.47
SEC24A-202ENST00000398844 KNSTRNQ9Y448 316 aa12.09□□□□□ -0.47
SEC24A-202ENST00000398844 JPH4Q96JJ6 628 aa12.09□□□□□ -0.47
SEC24A-202ENST00000398844 CASKIN1Q8WXD9 1431 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms