RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SUPT16HQ9Y5B9 1047 aaKnown RBP18.35■□□□□ 0.53
SHMT1-205ENST00000395684 SETD5Q9C0A6 1442 aa18.33■□□□□ 0.53
SHMT1-205ENST00000395684 MYT1Q01538 1121 aa18.31■□□□□ 0.52
SHMT1-205ENST00000395684 P3H3Q8IVL6 736 aa18.29■□□□□ 0.52
SHMT1-205ENST00000395684 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
SHMT1-205ENST00000395684 FAM50AQ14320 339 aaKnown RBP18.28■□□□□ 0.52
SHMT1-205ENST00000395684 CC2D2AQ9P2K1 1620 aa18.28■□□□□ 0.52
SHMT1-205ENST00000395684 SIN3AQ96ST3 1273 aa18.27■□□□□ 0.52
SHMT1-205ENST00000395684 FHAD1B1AJZ9 1412 aa18.27■□□□□ 0.52
SHMT1-205ENST00000395684 PCF11O94913 1555 aaKnown RBP18.23■□□□□ 0.51
SHMT1-205ENST00000395684 ATP1B4Q9UN42 357 aaPredicted RBP18.23■□□□□ 0.51
SHMT1-205ENST00000395684 WDR97A6NE52 1622 aa18.23■□□□□ 0.51
SHMT1-205ENST00000395684 CFAP43Q8NDM7 1665 aa18.21■□□□□ 0.51
SHMT1-205ENST00000395684 FHOD3Q2V2M9 1422 aa18.2■□□□□ 0.5
SHMT1-205ENST00000395684 DDX10Q13206 875 aaKnown RBP18.19■□□□□ 0.5
SHMT1-205ENST00000395684 FANCD2Q9BXW9 1451 aa18.18■□□□□ 0.5
SHMT1-205ENST00000395684 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
SHMT1-205ENST00000395684 TIMELESSQ9UNS1 1208 aa18.15■□□□□ 0.5
SHMT1-205ENST00000395684 FYCO1Q9BQS8 1478 aa18.14■□□□□ 0.49
SHMT1-205ENST00000395684 PPP1R15AO75807 674 aaPredicted RBP18.14■□□□□ 0.49
SHMT1-205ENST00000395684 CASKIN1Q8WXD9 1431 aa18.13■□□□□ 0.49
SHMT1-205ENST00000395684 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
SHMT1-205ENST00000395684 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.12■□□□□ 0.49
SHMT1-205ENST00000395684 HIRIP3Q9BW71 556 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-205ENST00000395684 POLA1P09884 1462 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-205ENST00000395684 DNMBPQ6XZF7 1577 aa18.1■□□□□ 0.49
SHMT1-205ENST00000395684 EFCAB5A4FU69 1503 aa18.1■□□□□ 0.49
SHMT1-205ENST00000395684 AQRO60306 1485 aaKnown RBP eCLIP18.1■□□□□ 0.49
SHMT1-205ENST00000395684 TOPBP1Q92547 1522 aa18.09■□□□□ 0.49
SHMT1-205ENST00000395684 TSHZ2Q9NRE2 1034 aa18.08■□□□□ 0.49
SHMT1-205ENST00000395684 FGD6Q6ZV73 1430 aa18.05■□□□□ 0.48
SHMT1-205ENST00000395684 FMN1Q68DA7 1419 aa18.03■□□□□ 0.48
SHMT1-205ENST00000395684 NESP48681 1621 aa18.03■□□□□ 0.48
SHMT1-205ENST00000395684 SNAPC4Q5SXM2 1469 aa18.03■□□□□ 0.48
SHMT1-205ENST00000395684 CUL7Q14999 1698 aa18.02■□□□□ 0.48
SHMT1-205ENST00000395684 PTPRKQ15262 1439 aa18.02■□□□□ 0.48
SHMT1-205ENST00000395684 CTTNBP2Q8WZ74 1663 aa18.01■□□□□ 0.47
SHMT1-205ENST00000395684 BCANQ96GW7 911 aa17.99■□□□□ 0.47
SHMT1-205ENST00000395684 MTUS2Q5JR59 1369 aa17.99■□□□□ 0.47
SHMT1-205ENST00000395684 CCDC18Q5T9S5 1454 aa17.99■□□□□ 0.47
SHMT1-205ENST00000395684 CCER2I3L3R5 266 aa17.99■□□□□ 0.47
SHMT1-205ENST00000395684 FKBP8Q14318 412 aa17.99■□□□□ 0.47
SHMT1-205ENST00000395684 HFM1A2PYH4 1435 aa17.98■□□□□ 0.47
SHMT1-205ENST00000395684 TONSLQ96HA7 1378 aa17.98■□□□□ 0.47
SHMT1-205ENST00000395684 ANP32CO43423 234 aa17.97■□□□□ 0.47
SHMT1-205ENST00000395684 UACAQ9BZF9 1416 aa17.96■□□□□ 0.47
SHMT1-205ENST00000395684 TRIM52Q96A61 297 aa17.95■□□□□ 0.46
SHMT1-205ENST00000395684 TDRD9Q8NDG6 1382 aaKnown RBP17.94■□□□□ 0.46
SHMT1-205ENST00000395684 PTPN23Q9H3S7 1636 aa17.93■□□□□ 0.46
SHMT1-205ENST00000395684 NAIPQ13075 1403 aa17.93■□□□□ 0.46
SHMT1-205ENST00000395684 NCOA2Q15596 1464 aa17.93■□□□□ 0.46
SHMT1-205ENST00000395684 URB2Q14146 1524 aaKnown RBP17.92■□□□□ 0.46
SHMT1-205ENST00000395684 SAMD9Q5K651 1589 aa17.92■□□□□ 0.46
SHMT1-205ENST00000395684 LRRIQ1Q96JM4 1722 aa17.92■□□□□ 0.46
SHMT1-205ENST00000395684 MYOM3Q5VTT5 1437 aa17.91■□□□□ 0.46
SHMT1-205ENST00000395684 GRIN2BQ13224 1484 aa17.91■□□□□ 0.46
SHMT1-205ENST00000395684 ABCA5Q8WWZ7 1642 aa17.86■□□□□ 0.45
SHMT1-205ENST00000395684 GAPVD1Q14C86 1478 aa17.86■□□□□ 0.45
SHMT1-205ENST00000395684 KDM5BQ9UGL1 1544 aa17.86■□□□□ 0.45
SHMT1-205ENST00000395684 NEFLP07196 543 aa17.84■□□□□ 0.45
SHMT1-205ENST00000395684 SUPT6HQ7KZ85 1726 aaKnown RBP17.83■□□□□ 0.45
SHMT1-205ENST00000395684 THOC2Q8NI27 1593 aaKnown RBP17.83■□□□□ 0.44
SHMT1-205ENST00000395684 EHBP1L1Q8N3D4 1523 aa17.82■□□□□ 0.44
SHMT1-205ENST00000395684 RRP7BPQ9NSQ0 103 aa17.82■□□□□ 0.44
SHMT1-205ENST00000395684 MAGI3Q5TCQ9 1506 aa17.82■□□□□ 0.44
SHMT1-205ENST00000395684 UGGT2Q9NYU1 1516 aa17.82■□□□□ 0.44
SHMT1-205ENST00000395684 LAMC3Q9Y6N6 1575 aa17.81■□□□□ 0.44
SHMT1-205ENST00000395684 ARHGEF11O15085 1522 aa17.81■□□□□ 0.44
SHMT1-205ENST00000395684 CHIC2Q9UKJ5 165 aa17.8■□□□□ 0.44
SHMT1-205ENST00000395684 DENND4BO75064 1496 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-205ENST00000395684 ANP32EQ9BTT0 268 aa17.78■□□□□ 0.44
SHMT1-205ENST00000395684 WASHC2AQ641Q2 1341 aa17.76■□□□□ 0.43
SHMT1-205ENST00000395684 HSPA5P11021 654 aaKnown RBP17.75■□□□□ 0.43
SHMT1-205ENST00000395684 TCOF1Q13428 1488 aaKnown RBP17.75■□□□□ 0.43
SHMT1-205ENST00000395684 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
SHMT1-205ENST00000395684 RBM19Q9Y4C8 960 aaKnown RBP17.73■□□□□ 0.43
SHMT1-205ENST00000395684 KDM6BO15054 1643 aa17.72■□□□□ 0.43
SHMT1-205ENST00000395684 HNRNPUQ00839 825 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHMT1-205ENST00000395684 MPHOSPH9Q99550 1183 aa17.7■□□□□ 0.42
SHMT1-205ENST00000395684 GCC2Q8IWJ2 1684 aa17.7■□□□□ 0.42
SHMT1-205ENST00000395684 EPRSP07814 1512 aaKnown RBP17.69■□□□□ 0.42
SHMT1-205ENST00000395684 KIF21AQ7Z4S6 1674 aa17.69■□□□□ 0.42
SHMT1-205ENST00000395684 AKNAQ7Z591 1439 aa17.69■□□□□ 0.42
SHMT1-205ENST00000395684 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
SHMT1-205ENST00000395684 HECW1Q76N89 1606 aa17.69■□□□□ 0.42
SHMT1-205ENST00000395684 EIF4G2P78344 907 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHMT1-205ENST00000395684 FOXD1Q16676 465 aa17.67■□□□□ 0.42
SHMT1-205ENST00000395684 L3MBTL2Q969R5 705 aa17.67■□□□□ 0.42
SHMT1-205ENST00000395684 ARID3CA6NKF2 412 aa17.67■□□□□ 0.42
SHMT1-205ENST00000395684 CDK13Q14004 1512 aaKnown RBP17.66■□□□□ 0.42
SHMT1-205ENST00000395684 MIA2Q96PC5 1412 aa17.66■□□□□ 0.42
SHMT1-205ENST00000395684 C11orf95C9JLR9 678 aaPredicted RBP17.65■□□□□ 0.42
SHMT1-205ENST00000395684 CCDC184Q52MB2 194 aa17.64■□□□□ 0.41
SHMT1-205ENST00000395684 IQGAP2Q13576 1575 aa17.63■□□□□ 0.41
SHMT1-205ENST00000395684 IRX6P78412 446 aaPredicted RBP17.62■□□□□ 0.41
SHMT1-205ENST00000395684 CNTLNQ9NXG0 1405 aa17.62■□□□□ 0.41
SHMT1-205ENST00000395684 WDR62O43379 1518 aa17.6■□□□□ 0.41
SHMT1-205ENST00000395684 NBPF8Q3BBV2 869 aa17.59■□□□□ 0.41
SHMT1-205ENST00000395684 NCOA1Q15788 1441 aa17.59■□□□□ 0.41
SHMT1-205ENST00000395684 ANKRD30BQ9BXX2 1392 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms