RNA–Protein interactions for RNA: ENST00000395060.5

CLIP2-203, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP2, Length 3,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-203ENST00000395060 CCNB3Q8WWL7 1395 aa20.36■□□□□ 0.85
CLIP2-203ENST00000395060 RAB3GAP2Q9H2M9 1393 aa20.35■□□□□ 0.85
CLIP2-203ENST00000395060 PRXQ9BXM0 1461 aa20.35■□□□□ 0.85
CLIP2-203ENST00000395060 RBM19Q9Y4C8 960 aaKnown RBP20.33■□□□□ 0.85
CLIP2-203ENST00000395060 CUX2O14529 1486 aa20.33■□□□□ 0.85
CLIP2-203ENST00000395060 CC2D2AQ9P2K1 1620 aa20.32■□□□□ 0.84
CLIP2-203ENST00000395060 DNAJC5BQ9UF47 199 aa20.28■□□□□ 0.84
CLIP2-203ENST00000395060 IGF1RP08069 1367 aa20.25■□□□□ 0.83
CLIP2-203ENST00000395060 ANP32CO43423 234 aa20.22■□□□□ 0.83
CLIP2-203ENST00000395060 RRBP1Q9P2E9 1410 aaKnown RBP20.22■□□□□ 0.83
CLIP2-203ENST00000395060 NESP48681 1621 aa20.22■□□□□ 0.83
CLIP2-203ENST00000395060 FGD5Q6ZNL6 1462 aa20.22■□□□□ 0.83
CLIP2-203ENST00000395060 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
CLIP2-203ENST00000395060 CARMIL1Q5VZK9 1371 aa20.2■□□□□ 0.82
CLIP2-203ENST00000395060 WDR97A6NE52 1622 aa20.19■□□□□ 0.82
CLIP2-203ENST00000395060 FANCD2Q9BXW9 1451 aa20.18■□□□□ 0.82
CLIP2-203ENST00000395060 PPP1R15AO75807 674 aaPredicted RBP20.16■□□□□ 0.82
CLIP2-203ENST00000395060 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
CLIP2-203ENST00000395060 MAPKBP1O60336 1514 aa20.15■□□□□ 0.82
CLIP2-203ENST00000395060 ARHGAP35Q9NRY4 1499 aa20.13■□□□□ 0.81
CLIP2-203ENST00000395060 MSH5O43196 834 aa20.13■□□□□ 0.81
CLIP2-203ENST00000395060 HNRNPUQ00839 825 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLIP2-203ENST00000395060 SETD5Q9C0A6 1442 aa20.11■□□□□ 0.81
CLIP2-203ENST00000395060 CNGB1Q14028 1251 aaPredicted RBP20.11■□□□□ 0.81
CLIP2-203ENST00000395060 PHLDB1Q86UU1 1377 aa20.1■□□□□ 0.81
CLIP2-203ENST00000395060 ERICH6Q7L0X2 663 aa20.08■□□□□ 0.81
CLIP2-203ENST00000395060 SENP3-EIF4A1A0A087X0R7 540 aa20.02■□□□□ 0.79
CLIP2-203ENST00000395060 TDRD9Q8NDG6 1382 aaKnown RBP20.01■□□□□ 0.79
CLIP2-203ENST00000395060 TONSLQ96HA7 1378 aa19.99■□□□□ 0.79
CLIP2-203ENST00000395060 POLA1P09884 1462 aaPredicted RBP19.99■□□□□ 0.79
CLIP2-203ENST00000395060 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
CLIP2-203ENST00000395060 TOPBP1Q92547 1522 aa19.98■□□□□ 0.79
CLIP2-203ENST00000395060 PRDM2Q13029 1718 aa19.97■□□□□ 0.79
CLIP2-203ENST00000395060 CCER2I3L3R5 266 aa19.96■□□□□ 0.79
CLIP2-203ENST00000395060 FHOD3Q2V2M9 1422 aa19.94■□□□□ 0.78
CLIP2-203ENST00000395060 FAM9BQ8IZU0 186 aa19.92■□□□□ 0.78
CLIP2-203ENST00000395060 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
CLIP2-203ENST00000395060 B4GALNT3Q6L9W6 998 aa19.9■□□□□ 0.78
CLIP2-203ENST00000395060 LRRC9Q6ZRR7 1453 aa19.9■□□□□ 0.78
CLIP2-203ENST00000395060 DNMBPQ6XZF7 1577 aa19.89■□□□□ 0.78
CLIP2-203ENST00000395060 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
CLIP2-203ENST00000395060 TIAM1Q13009 1591 aa19.87■□□□□ 0.77
CLIP2-203ENST00000395060 URB2Q14146 1524 aaKnown RBP19.87■□□□□ 0.77
CLIP2-203ENST00000395060 ABCA10Q8WWZ4 1543 aa19.85■□□□□ 0.77
CLIP2-203ENST00000395060 NBR1Q14596 966 aa19.84■□□□□ 0.77
CLIP2-203ENST00000395060 RRP7BPQ9NSQ0 103 aa19.83■□□□□ 0.77
CLIP2-203ENST00000395060 ARID3CA6NKF2 412 aa19.83■□□□□ 0.76
CLIP2-203ENST00000395060 POLR3GLQ9BT43 218 aa19.8■□□□□ 0.76
CLIP2-203ENST00000395060 FOXD1Q16676 465 aa19.8■□□□□ 0.76
CLIP2-203ENST00000395060 PDS5BQ9NTI5 1447 aa19.8■□□□□ 0.76
CLIP2-203ENST00000395060 HSPA5P11021 654 aaKnown RBP19.8■□□□□ 0.76
CLIP2-203ENST00000395060 FHAD1B1AJZ9 1412 aa19.79■□□□□ 0.76
CLIP2-203ENST00000395060 WASHC2AQ641Q2 1341 aa19.76■□□□□ 0.75
CLIP2-203ENST00000395060 TIMELESSQ9UNS1 1208 aa19.76■□□□□ 0.75
CLIP2-203ENST00000395060 MRS2Q9HD23 443 aa19.74■□□□□ 0.75
CLIP2-203ENST00000395060 GAPVD1Q14C86 1478 aa19.74■□□□□ 0.75
CLIP2-203ENST00000395060 LAMC3Q9Y6N6 1575 aa19.73■□□□□ 0.75
CLIP2-203ENST00000395060 PCF11O94913 1555 aaKnown RBP19.73■□□□□ 0.75
CLIP2-203ENST00000395060 FANCIQ9NVI1 1328 aa19.72■□□□□ 0.75
CLIP2-203ENST00000395060 MTUS2Q5JR59 1369 aa19.71■□□□□ 0.75
CLIP2-203ENST00000395060 CCDC18Q5T9S5 1454 aa19.7■□□□□ 0.74
CLIP2-203ENST00000395060 PPP4R2Q9NY27 417 aa19.7■□□□□ 0.74
CLIP2-203ENST00000395060 PTPRKQ15262 1439 aa19.69■□□□□ 0.74
CLIP2-203ENST00000395060 C11orf95C9JLR9 678 aaPredicted RBP19.69■□□□□ 0.74
CLIP2-203ENST00000395060 DEKP35659 375 aaKnown RBP19.69■□□□□ 0.74
CLIP2-203ENST00000395060 AQRO60306 1485 aaKnown RBP eCLIP19.68■□□□□ 0.743e-7■■■□□ 17
CLIP2-203ENST00000395060 PAK3O75914 559 aaPredicted RBP19.65■□□□□ 0.74
CLIP2-203ENST00000395060 EIF4G2P78344 907 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLIP2-203ENST00000395060 KIF21AQ7Z4S6 1674 aa19.63■□□□□ 0.73
CLIP2-203ENST00000395060 FGD6Q6ZV73 1430 aa19.63■□□□□ 0.73
CLIP2-203ENST00000395060 CASKIN1Q8WXD9 1431 aa19.63■□□□□ 0.73
CLIP2-203ENST00000395060 ZNF326Q5BKZ1 582 aaKnown RBP19.62■□□□□ 0.73
CLIP2-203ENST00000395060 FMN1Q68DA7 1419 aa19.61■□□□□ 0.73
CLIP2-203ENST00000395060 CUL7Q14999 1698 aa19.6■□□□□ 0.73
CLIP2-203ENST00000395060 MAP3K1Q13233 1512 aa19.6■□□□□ 0.73
CLIP2-203ENST00000395060 L3MBTL2Q969R5 705 aa19.6■□□□□ 0.73
CLIP2-203ENST00000395060 PRKRIP1Q9H875 184 aaPredicted RBP19.59■□□□□ 0.73
CLIP2-203ENST00000395060 FYCO1Q9BQS8 1478 aa19.58■□□□□ 0.73
CLIP2-203ENST00000395060 UACAQ9BZF9 1416 aa19.57■□□□□ 0.72
CLIP2-203ENST00000395060 FBLN2P98095 1184 aa19.56■□□□□ 0.72
CLIP2-203ENST00000395060 EFCAB5A4FU69 1503 aa19.56■□□□□ 0.72
CLIP2-203ENST00000395060 NOP58Q9Y2X3 529 aaKnown RBP19.56■□□□□ 0.72
CLIP2-203ENST00000395060 NPM2Q86SE8 214 aaKnown RBP19.54■□□□□ 0.72
CLIP2-203ENST00000395060 NAIPQ13075 1403 aa19.54■□□□□ 0.72
CLIP2-203ENST00000395060 ABCA5Q8WWZ7 1642 aa19.54■□□□□ 0.72
CLIP2-203ENST00000395060 SALL2Q9Y467 1007 aaPredicted RBP19.53■□□□□ 0.72
CLIP2-203ENST00000395060 CTTNBP2Q8WZ74 1663 aa19.53■□□□□ 0.72
CLIP2-203ENST00000395060 CCDC136Q96JN2 1154 aa19.52■□□□□ 0.72
CLIP2-203ENST00000395060 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
CLIP2-203ENST00000395060 HFM1A2PYH4 1435 aa19.51■□□□□ 0.71
CLIP2-203ENST00000395060 SNAPC4Q5SXM2 1469 aa19.5■□□□□ 0.71
CLIP2-203ENST00000395060 NBPF8Q3BBV2 869 aa19.5■□□□□ 0.71
CLIP2-203ENST00000395060 ZNF608Q9ULD9 1512 aaPredicted RBP19.49■□□□□ 0.71
CLIP2-203ENST00000395060 CFAP43Q8NDM7 1665 aa19.49■□□□□ 0.71
CLIP2-203ENST00000395060 MPHOSPH9Q99550 1183 aa19.49■□□□□ 0.71
CLIP2-203ENST00000395060 CNTLNQ9NXG0 1405 aa19.46■□□□□ 0.71
CLIP2-203ENST00000395060 TARBP1Q13395 1621 aaKnown RBP19.46■□□□□ 0.71
CLIP2-203ENST00000395060 PTPN23Q9H3S7 1636 aa19.46■□□□□ 0.71
CLIP2-203ENST00000395060 RTN4Q9NQC3 1192 aaKnown RBP19.45■□□□□ 0.7
CLIP2-203ENST00000395060 CCDC7Q96M83 1385 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms