RNA–Protein interactions for RNA: ENST00000394820.8

NFKB1-202, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NFKB1, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-202ENST00000394820 PRXQ9BXM0 1461 aa18.8■□□□□ 0.6
NFKB1-202ENST00000394820 IGF1RP08069 1367 aa18.8■□□□□ 0.6
NFKB1-202ENST00000394820 HMGXB3Q12766 1538 aa18.76■□□□□ 0.59
NFKB1-202ENST00000394820 FGD5Q6ZNL6 1462 aa18.74■□□□□ 0.59
NFKB1-202ENST00000394820 RAD54L2Q9Y4B4 1467 aa18.74■□□□□ 0.59
NFKB1-202ENST00000394820 NESP48681 1621 aa18.73■□□□□ 0.59
NFKB1-202ENST00000394820 TDRD9Q8NDG6 1382 aaKnown RBP18.71■□□□□ 0.59
NFKB1-202ENST00000394820 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
NFKB1-202ENST00000394820 SIN3AQ96ST3 1273 aa18.7■□□□□ 0.58
NFKB1-202ENST00000394820 FANCD2Q9BXW9 1451 aa18.69■□□□□ 0.58
NFKB1-202ENST00000394820 ARHGAP35Q9NRY4 1499 aa18.69■□□□□ 0.58
NFKB1-202ENST00000394820 DHX57Q6P158 1386 aaKnown RBP18.66■□□□□ 0.58
NFKB1-202ENST00000394820 CC2D2AQ9P2K1 1620 aa18.66■□□□□ 0.58
NFKB1-202ENST00000394820 FHOD3Q2V2M9 1422 aa18.66■□□□□ 0.58
NFKB1-202ENST00000394820 ANP32CO43423 234 aa18.65■□□□□ 0.58
NFKB1-202ENST00000394820 BIVM-ERCC5R4GMW8 1640 aa18.64■□□□□ 0.58
NFKB1-202ENST00000394820 ERICH3Q5RHP9 1530 aa18.63■□□□□ 0.57
NFKB1-202ENST00000394820 CHIC2Q9UKJ5 165 aa18.61■□□□□ 0.57
NFKB1-202ENST00000394820 TSHZ2Q9NRE2 1034 aa18.6■□□□□ 0.57
NFKB1-202ENST00000394820 HNRNPUQ00839 825 aaKnown RBP eCLIP18.59■□□□□ 0.57
NFKB1-202ENST00000394820 RAB3GAP2Q9H2M9 1393 aa18.58■□□□□ 0.57
NFKB1-202ENST00000394820 ANP32EQ9BTT0 268 aa18.58■□□□□ 0.56
NFKB1-202ENST00000394820 FBLN2P98095 1184 aa18.58■□□□□ 0.56
NFKB1-202ENST00000394820 MTUS2Q5JR59 1369 aa18.54■□□□□ 0.56
NFKB1-202ENST00000394820 PHLDB1Q86UU1 1377 aa18.53■□□□□ 0.56
NFKB1-202ENST00000394820 ZNF326Q5BKZ1 582 aaKnown RBP18.51■□□□□ 0.55
NFKB1-202ENST00000394820 RRP7BPQ9NSQ0 103 aa18.5■□□□□ 0.55
NFKB1-202ENST00000394820 FAM9BQ8IZU0 186 aa18.5■□□□□ 0.55
NFKB1-202ENST00000394820 CDK11AQ9UQ88 783 aaPredicted RBP18.5■□□□□ 0.55
NFKB1-202ENST00000394820 NBR1Q14596 966 aa18.48■□□□□ 0.55
NFKB1-202ENST00000394820 POLA1P09884 1462 aaPredicted RBP18.47■□□□□ 0.55
NFKB1-202ENST00000394820 FHAD1B1AJZ9 1412 aa18.46■□□□□ 0.55
NFKB1-202ENST00000394820 BCL11AQ9H165 835 aa18.46■□□□□ 0.55
NFKB1-202ENST00000394820 RRBP1Q9P2E9 1410 aaKnown RBP18.44■□□□□ 0.54
NFKB1-202ENST00000394820 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
NFKB1-202ENST00000394820 SETD5Q9C0A6 1442 aa18.44■□□□□ 0.54
NFKB1-202ENST00000394820 CLSPNQ9HAW4 1339 aa18.43■□□□□ 0.54
NFKB1-202ENST00000394820 LRRC9Q6ZRR7 1453 aa18.4■□□□□ 0.54
NFKB1-202ENST00000394820 SALL2Q9Y467 1007 aaPredicted RBP18.4■□□□□ 0.54
NFKB1-202ENST00000394820 RBM19Q9Y4C8 960 aaKnown RBP18.4■□□□□ 0.54
NFKB1-202ENST00000394820 NPM2Q86SE8 214 aaKnown RBP18.37■□□□□ 0.53
NFKB1-202ENST00000394820 ZNF777Q9ULD5 760 aaPredicted RBP18.36■□□□□ 0.53
NFKB1-202ENST00000394820 PDS5BQ9NTI5 1447 aa18.35■□□□□ 0.53
NFKB1-202ENST00000394820 TONSLQ96HA7 1378 aa18.34■□□□□ 0.53
NFKB1-202ENST00000394820 TIAM1Q13009 1591 aa18.33■□□□□ 0.53
NFKB1-202ENST00000394820 FOXD1Q16676 465 aa18.32■□□□□ 0.52
NFKB1-202ENST00000394820 AQRO60306 1485 aaKnown RBP eCLIP18.32■□□□□ 0.52
NFKB1-202ENST00000394820 GAPVD1Q14C86 1478 aa18.32■□□□□ 0.52
NFKB1-202ENST00000394820 DNMBPQ6XZF7 1577 aa18.3■□□□□ 0.52
NFKB1-202ENST00000394820 URB2Q14146 1524 aaKnown RBP18.3■□□□□ 0.52
NFKB1-202ENST00000394820 PCF11O94913 1555 aaKnown RBP18.29■□□□□ 0.52
NFKB1-202ENST00000394820 ABCA10Q8WWZ4 1543 aa18.28■□□□□ 0.52
NFKB1-202ENST00000394820 FMN1Q68DA7 1419 aa18.27■□□□□ 0.52
NFKB1-202ENST00000394820 B4GALNT3Q6L9W6 998 aa18.27■□□□□ 0.51
NFKB1-202ENST00000394820 RTL5Q5HYW3 569 aaPredicted RBP18.24■□□□□ 0.51
NFKB1-202ENST00000394820 CHMP7Q8WUX9 453 aaPredicted RBP18.24■□□□□ 0.51
NFKB1-202ENST00000394820 PPP1R15AO75807 674 aaPredicted RBP18.21■□□□□ 0.51
NFKB1-202ENST00000394820 CASKIN1Q8WXD9 1431 aa18.21■□□□□ 0.51
NFKB1-202ENST00000394820 MRS2Q9HD23 443 aa18.2■□□□□ 0.5
NFKB1-202ENST00000394820 FGD6Q6ZV73 1430 aa18.19■□□□□ 0.5
NFKB1-202ENST00000394820 RTN4Q9NQC3 1192 aaKnown RBP18.16■□□□□ 0.5
NFKB1-202ENST00000394820 ZNF644Q9H582 1327 aaPredicted RBP18.15■□□□□ 0.5
NFKB1-202ENST00000394820 FYCO1Q9BQS8 1478 aa18.15■□□□□ 0.5
NFKB1-202ENST00000394820 WDR97A6NE52 1622 aa18.13■□□□□ 0.49
NFKB1-202ENST00000394820 MAPKBP1O60336 1514 aa18.12■□□□□ 0.49
NFKB1-202ENST00000394820 NCOA2Q15596 1464 aa18.12■□□□□ 0.49
NFKB1-202ENST00000394820 PRDM2Q13029 1718 aa18.12■□□□□ 0.49
NFKB1-202ENST00000394820 CCDC18Q5T9S5 1454 aa18.11■□□□□ 0.49
NFKB1-202ENST00000394820 ERCC6Q03468 1493 aa18.1■□□□□ 0.49
NFKB1-202ENST00000394820 PTPRKQ15262 1439 aa18.1■□□□□ 0.49
NFKB1-202ENST00000394820 SLC4A1APQ9BWU0 796 aaKnown RBP18.1■□□□□ 0.49
NFKB1-202ENST00000394820 CCDC136Q96JN2 1154 aa18.08■□□□□ 0.49
NFKB1-202ENST00000394820 LAMC3Q9Y6N6 1575 aa18.08■□□□□ 0.48
NFKB1-202ENST00000394820 CFDP1Q9UEE9 299 aaPredicted RBP18.07■□□□□ 0.48
NFKB1-202ENST00000394820 MYOM3Q5VTT5 1437 aa18.06■□□□□ 0.48
NFKB1-202ENST00000394820 EFCAB5A4FU69 1503 aa18.06■□□□□ 0.48
NFKB1-202ENST00000394820 MPHOSPH9Q99550 1183 aa18.06■□□□□ 0.48
NFKB1-202ENST00000394820 DAXXQ9UER7 740 aaPredicted RBP18.05■□□□□ 0.48
NFKB1-202ENST00000394820 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
NFKB1-202ENST00000394820 MAP3K1Q13233 1512 aa18.04■□□□□ 0.48
NFKB1-202ENST00000394820 CDK13Q14004 1512 aaKnown RBP18.03■□□□□ 0.48
NFKB1-202ENST00000394820 HSPA5P11021 654 aaKnown RBP18.03■□□□□ 0.48
NFKB1-202ENST00000394820 ANP32AP39687 249 aaKnown RBP18.03■□□□□ 0.48
NFKB1-202ENST00000394820 L3MBTL2Q969R5 705 aa18.02■□□□□ 0.47
NFKB1-202ENST00000394820 CUL7Q14999 1698 aa18.01■□□□□ 0.47
NFKB1-202ENST00000394820 KDM2AQ9Y2K7 1162 aa17.99■□□□□ 0.47
NFKB1-202ENST00000394820 KIF21AQ7Z4S6 1674 aa17.99■□□□□ 0.47
NFKB1-202ENST00000394820 EIF4G2P78344 907 aaKnown RBP eCLIP17.99■□□□□ 0.47
NFKB1-202ENST00000394820 TIMELESSQ9UNS1 1208 aa17.99■□□□□ 0.47
NFKB1-202ENST00000394820 SNAPC4Q5SXM2 1469 aa17.98■□□□□ 0.47
NFKB1-202ENST00000394820 NAIPQ13075 1403 aa17.98■□□□□ 0.47
NFKB1-202ENST00000394820 DEKP35659 375 aaKnown RBP17.97■□□□□ 0.47
NFKB1-202ENST00000394820 LAS1LQ9Y4W2 734 aaKnown RBP17.97■□□□□ 0.47
NFKB1-202ENST00000394820 UACAQ9BZF9 1416 aa17.95■□□□□ 0.46
NFKB1-202ENST00000394820 JPH4Q96JJ6 628 aa17.95■□□□□ 0.46
NFKB1-202ENST00000394820 EIF5BO60841 1220 aaKnown RBP17.95■□□□□ 0.46
NFKB1-202ENST00000394820 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
NFKB1-202ENST00000394820 PLEKHD1A6NEE1 506 aa17.94■□□□□ 0.46
NFKB1-202ENST00000394820 GRIN2BQ13224 1484 aa17.94■□□□□ 0.46
NFKB1-202ENST00000394820 HFM1A2PYH4 1435 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms