RNA–Protein interactions for RNA: ENST00000394820.8

NFKB1-202, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NFKB1, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-202ENST00000394820 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
NFKB1-202ENST00000394820 SHROOM4Q9ULL8 1493 aa23.15■■□□□ 1.3
NFKB1-202ENST00000394820 DCAF8L2P0C7V8 631 aa23.04■■□□□ 1.28
NFKB1-202ENST00000394820 SUPT5HO00267 1087 aaKnown RBP22.78■■□□□ 1.24
NFKB1-202ENST00000394820 PCGF6Q9BYE7 350 aa22■■□□□ 1.11
NFKB1-202ENST00000394820 EHMT2Q96KQ7 1210 aa21.93■■□□□ 1.1
NFKB1-202ENST00000394820 ZCCHC6Q5VYS8 1495 aaKnown RBP21.84■■□□□ 1.09
NFKB1-202ENST00000394820 CCDC180Q9P1Z9 1646 aa21.68■■□□□ 1.06
NFKB1-202ENST00000394820 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
NFKB1-202ENST00000394820 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
NFKB1-202ENST00000394820 HRCP23327 699 aa21.41■■□□□ 1.02
NFKB1-202ENST00000394820 FAM9AQ8IZU1 332 aaPredicted RBP21.39■■□□□ 1.02
NFKB1-202ENST00000394820 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
NFKB1-202ENST00000394820 ABCC9O60706 1549 aa21.22■□□□□ 0.99
NFKB1-202ENST00000394820 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.98
NFKB1-202ENST00000394820 TTBK1Q5TCY1 1321 aaPredicted RBP21.19■□□□□ 0.98
NFKB1-202ENST00000394820 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
NFKB1-202ENST00000394820 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
NFKB1-202ENST00000394820 DCAF1Q9Y4B6 1507 aa20.88■□□□□ 0.93
NFKB1-202ENST00000394820 RSF1Q96T23 1441 aaPredicted RBP20.72■□□□□ 0.91
NFKB1-202ENST00000394820 TRIM26Q12899 539 aaPredicted RBP20.7■□□□□ 0.9
NFKB1-202ENST00000394820 PABPN1Q86U42 306 aaKnown RBP eCLIP20.61■□□□□ 0.89
NFKB1-202ENST00000394820 CECR2Q9BXF3 1484 aa20.59■□□□□ 0.89
NFKB1-202ENST00000394820 CCER1Q8TC90 406 aaPredicted RBP20.58■□□□□ 0.89
NFKB1-202ENST00000394820 YTHDC1Q96MU7 727 aaKnown RBP20.56■□□□□ 0.88
NFKB1-202ENST00000394820 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
NFKB1-202ENST00000394820 RB1CC1Q8TDY2 1594 aa20.44■□□□□ 0.86
NFKB1-202ENST00000394820 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
NFKB1-202ENST00000394820 ZEB1P37275 1124 aaPredicted RBP20.38■□□□□ 0.85
NFKB1-202ENST00000394820 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
NFKB1-202ENST00000394820 NACADO15069 1562 aa20.36■□□□□ 0.85
NFKB1-202ENST00000394820 PELP1Q8IZL8 1130 aaKnown RBP20.22■□□□□ 0.83
NFKB1-202ENST00000394820 SCAF1Q9H7N4 1312 aaKnown RBP20.22■□□□□ 0.83
NFKB1-202ENST00000394820 WIZO95785 1651 aa20.21■□□□□ 0.83
NFKB1-202ENST00000394820 CENPBP07199 599 aaPredicted RBP20.18■□□□□ 0.82
NFKB1-202ENST00000394820 UBTFP17480 764 aaKnown RBP20.18■□□□□ 0.82
NFKB1-202ENST00000394820 GTF3C3Q9Y5Q9 886 aa20.13■□□□□ 0.81
NFKB1-202ENST00000394820 DIEXFQ68CQ4 756 aaKnown RBP20.05■□□□□ 0.8
NFKB1-202ENST00000394820 HNRNPUL2Q1KMD3 747 aaKnown RBP19.99■□□□□ 0.79
NFKB1-202ENST00000394820 NEUROD1Q13562 356 aa19.99■□□□□ 0.79
NFKB1-202ENST00000394820 BAZ1AQ9NRL2 1556 aaPredicted RBP19.97■□□□□ 0.79
NFKB1-202ENST00000394820 ABCC8Q09428 1581 aa19.94■□□□□ 0.78
NFKB1-202ENST00000394820 CCDC88BA6NC98 1476 aa19.9■□□□□ 0.78
NFKB1-202ENST00000394820 ACIN1Q9UKV3 1341 aaKnown RBP19.88■□□□□ 0.77
NFKB1-202ENST00000394820 APLP2Q06481 763 aa19.86■□□□□ 0.77
NFKB1-202ENST00000394820 CSRNP3Q8WYN3 585 aa19.84■□□□□ 0.77
NFKB1-202ENST00000394820 SOGA1O94964 1423 aa19.82■□□□□ 0.76
NFKB1-202ENST00000394820 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
NFKB1-202ENST00000394820 TOP2AP11388 1531 aaKnown RBP19.71■□□□□ 0.75
NFKB1-202ENST00000394820 RUSC2Q8N2Y8 1516 aa19.7■□□□□ 0.74
NFKB1-202ENST00000394820 ITGAEP38570 1179 aa19.7■□□□□ 0.74
NFKB1-202ENST00000394820 SMARCA2P51531 1590 aa19.63■□□□□ 0.73
NFKB1-202ENST00000394820 CEP162Q5TB80 1403 aa19.63■□□□□ 0.73
NFKB1-202ENST00000394820 WRNQ14191 1432 aaPredicted RBP eCLIP19.6■□□□□ 0.73
NFKB1-202ENST00000394820 UNC13AQ9UPW8 1703 aa19.57■□□□□ 0.72
NFKB1-202ENST00000394820 BCANQ96GW7 911 aa19.55■□□□□ 0.72
NFKB1-202ENST00000394820 BAZ1BQ9UIG0 1483 aaKnown RBP19.55■□□□□ 0.72
NFKB1-202ENST00000394820 ATP1B4Q9UN42 357 aaPredicted RBP19.52■□□□□ 0.72
NFKB1-202ENST00000394820 BICRAQ9NZM4 1560 aa19.5■□□□□ 0.71
NFKB1-202ENST00000394820 ZNF316A6NFI3 1004 aaPredicted RBP19.49■□□□□ 0.71
NFKB1-202ENST00000394820 MIER1Q8N108 512 aa19.46■□□□□ 0.71
NFKB1-202ENST00000394820 TNIKQ9UKE5 1360 aa19.46■□□□□ 0.71
NFKB1-202ENST00000394820 ATAD2BQ9ULI0 1458 aa19.45■□□□□ 0.7
NFKB1-202ENST00000394820 GOLGA3Q08378 1498 aa19.39■□□□□ 0.69
NFKB1-202ENST00000394820 EIF4G1Q04637 1599 aaKnown RBP19.37■□□□□ 0.69
NFKB1-202ENST00000394820 CLIP1P30622 1438 aa19.36■□□□□ 0.69
NFKB1-202ENST00000394820 EEA1Q15075 1411 aa19.33■□□□□ 0.68
NFKB1-202ENST00000394820 CNGB1Q14028 1251 aaPredicted RBP19.3■□□□□ 0.68
NFKB1-202ENST00000394820 P3H3Q8IVL6 736 aa19.28■□□□□ 0.68
NFKB1-202ENST00000394820 MYT1Q01538 1121 aa19.28■□□□□ 0.68
NFKB1-202ENST00000394820 SYNJ1O43426 1573 aa19.27■□□□□ 0.68
NFKB1-202ENST00000394820 CEP164Q9UPV0 1460 aa19.25■□□□□ 0.67
NFKB1-202ENST00000394820 RAPGEF2Q9Y4G8 1499 aa19.25■□□□□ 0.67
NFKB1-202ENST00000394820 NEFLP07196 543 aa19.14■□□□□ 0.65
NFKB1-202ENST00000394820 KANK4Q5T7N3 995 aaPredicted RBP19.13■□□□□ 0.65
NFKB1-202ENST00000394820 ERICH6Q7L0X2 663 aa19.11■□□□□ 0.65
NFKB1-202ENST00000394820 HIRIP3Q9BW71 556 aaPredicted RBP19.11■□□□□ 0.65
NFKB1-202ENST00000394820 VPS8Q8N3P4 1428 aa19.07■□□□□ 0.64
NFKB1-202ENST00000394820 FAM50AQ14320 339 aaKnown RBP19.04■□□□□ 0.64
NFKB1-202ENST00000394820 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
NFKB1-202ENST00000394820 KIF27Q86VH2 1401 aa19.02■□□□□ 0.64
NFKB1-202ENST00000394820 FKBP8Q14318 412 aa18.97■□□□□ 0.63
NFKB1-202ENST00000394820 CUX2O14529 1486 aa18.97■□□□□ 0.63
NFKB1-202ENST00000394820 NCAPD3P42695 1498 aa18.96■□□□□ 0.63
NFKB1-202ENST00000394820 TRIM52Q96A61 297 aa18.95■□□□□ 0.62
NFKB1-202ENST00000394820 DDX10Q13206 875 aaKnown RBP18.95■□□□□ 0.62
NFKB1-202ENST00000394820 POLR3GLQ9BT43 218 aa18.92■□□□□ 0.62
NFKB1-202ENST00000394820 ARID3CA6NKF2 412 aa18.92■□□□□ 0.62
NFKB1-202ENST00000394820 KIF21BO75037 1637 aa18.91■□□□□ 0.62
NFKB1-202ENST00000394820 CUX1P39880 1505 aa18.91■□□□□ 0.62
NFKB1-202ENST00000394820 TOP2BQ02880 1626 aa18.88■□□□□ 0.61
NFKB1-202ENST00000394820 IRX6P78412 446 aaPredicted RBP18.88■□□□□ 0.61
NFKB1-202ENST00000394820 CADPSQ9ULU8 1353 aa18.86■□□□□ 0.61
NFKB1-202ENST00000394820 CARMIL1Q5VZK9 1371 aa18.85■□□□□ 0.61
NFKB1-202ENST00000394820 DNAJC5BQ9UF47 199 aa18.83■□□□□ 0.61
NFKB1-202ENST00000394820 KCNH8Q96L42 1107 aa18.82■□□□□ 0.6
NFKB1-202ENST00000394820 SUPT16HQ9Y5B9 1047 aaKnown RBP18.82■□□□□ 0.6
NFKB1-202ENST00000394820 CFTRP13569 1480 aa18.82■□□□□ 0.6
NFKB1-202ENST00000394820 ARAP1Q96P48 1450 aa18.82■□□□□ 0.6
NFKB1-202ENST00000394820 SENP3-EIF4A1A0A087X0R7 540 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms