RNA–Protein interactions for RNA: ENST00000394609.6

RTN4-205, Transcript of reticulon 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN4, Length 1,898 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-205ENST00000394609 TRIM41Q8WV44 630 aa11.55□□□□□ -0.56
RTN4-205ENST00000394609 CC2D2AQ9P2K1 1620 aa11.51□□□□□ -0.57
RTN4-205ENST00000394609 HMGXB3Q12766 1538 aa11.51□□□□□ -0.57
RTN4-205ENST00000394609 C19orf67A6NJJ6 358 aa11.49□□□□□ -0.57
RTN4-205ENST00000394609 EVX2Q03828 476 aa11.46□□□□□ -0.57
RTN4-205ENST00000394609 CHADLQ6NUI6 762 aa11.44□□□□□ -0.58
RTN4-205ENST00000394609 ABCC8Q09428 1581 aa11.42□□□□□ -0.58
RTN4-205ENST00000394609 FAM9AQ8IZU1 332 aaPredicted RBP11.42□□□□□ -0.58
RTN4-205ENST00000394609 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
RTN4-205ENST00000394609 LOC105371045A0A1W2PR82 267 aa11.39□□□□□ -0.59
RTN4-205ENST00000394609 WRNQ14191 1432 aaPredicted RBP eCLIP11.34□□□□□ -0.59
RTN4-205ENST00000394609 CFTRP13569 1480 aa11.34□□□□□ -0.59
RTN4-205ENST00000394609 SPDYE4A6NLX3 237 aa11.34□□□□□ -0.59
RTN4-205ENST00000394609 FARP1Q9Y4F1 1045 aaPredicted RBP11.34□□□□□ -0.59
RTN4-205ENST00000394609 CADPSQ9ULU8 1353 aa11.32□□□□□ -0.6
RTN4-205ENST00000394609 GABBR2O75899 941 aa11.31□□□□□ -0.6
RTN4-205ENST00000394609 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
RTN4-205ENST00000394609 CLCN6P51797 869 aa11.29□□□□□ -0.6
RTN4-205ENST00000394609 SYNJ1O43426 1573 aa11.26□□□□□ -0.61
RTN4-205ENST00000394609 SOGA1O94964 1423 aa11.25□□□□□ -0.61
RTN4-205ENST00000394609 NESP48681 1621 aa11.25□□□□□ -0.61
RTN4-205ENST00000394609 CREBZFQ9NS37 354 aa11.21□□□□□ -0.61
RTN4-205ENST00000394609 RUSC2Q8N2Y8 1516 aa11.21□□□□□ -0.62
RTN4-205ENST00000394609 FANCD2Q9BXW9 1451 aa11.2□□□□□ -0.62
RTN4-205ENST00000394609 CUX1P39880 1505 aa11.19□□□□□ -0.62
RTN4-205ENST00000394609 TOP2BQ02880 1626 aa11.18□□□□□ -0.62
RTN4-205ENST00000394609 ZNF579Q8NAF0 562 aaKnown RBP11.14□□□□□ -0.63
RTN4-205ENST00000394609 LAMC3Q9Y6N6 1575 aa11.14□□□□□ -0.63
RTN4-205ENST00000394609 EEA1Q15075 1411 aa11.13□□□□□ -0.63
RTN4-205ENST00000394609 NPM1P06748 294 aaKnown RBP eCLIP11.12□□□□□ -0.63
RTN4-205ENST00000394609 ZRANB1Q9UGI0 708 aa11.12□□□□□ -0.63
RTN4-205ENST00000394609 BIVM-ERCC5R4GMW8 1640 aa11.12□□□□□ -0.63
RTN4-205ENST00000394609 PAK3O75914 559 aaPredicted RBP11.12□□□□□ -0.63
RTN4-205ENST00000394609 PRDM2Q13029 1718 aa11.12□□□□□ -0.63
RTN4-205ENST00000394609 PDS5BQ9NTI5 1447 aa11.12□□□□□ -0.63
RTN4-205ENST00000394609 CEP164Q9UPV0 1460 aa11.1□□□□□ -0.63
RTN4-205ENST00000394609 UBTFP17480 764 aaKnown RBP11.08□□□□□ -0.64
RTN4-205ENST00000394609 FGD5Q6ZNL6 1462 aa11.07□□□□□ -0.64
RTN4-205ENST00000394609 LHX8Q68G74 356 aa11.06□□□□□ -0.64
RTN4-205ENST00000394609 TOPBP1Q92547 1522 aa11.06□□□□□ -0.64
RTN4-205ENST00000394609 PROM2Q8N271 834 aa11.05□□□□□ -0.64
RTN4-205ENST00000394609 DCBLD2Q96PD2 775 aa11.05□□□□□ -0.64
RTN4-205ENST00000394609 KIF27Q86VH2 1401 aa11.05□□□□□ -0.64
RTN4-205ENST00000394609 URB2Q14146 1524 aaKnown RBP11.05□□□□□ -0.64
RTN4-205ENST00000394609 DNMBPQ6XZF7 1577 aa11.04□□□□□ -0.64
RTN4-205ENST00000394609 CUX2O14529 1486 aa11.03□□□□□ -0.64
RTN4-205ENST00000394609 RAD54L2Q9Y4B4 1467 aa11.03□□□□□ -0.64
RTN4-205ENST00000394609 POLA1P09884 1462 aaPredicted RBP11.02□□□□□ -0.65
RTN4-205ENST00000394609 GOLGA3Q08378 1498 aa11.01□□□□□ -0.65
RTN4-205ENST00000394609 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
RTN4-205ENST00000394609 RAPGEF2Q9Y4G8 1499 aa11□□□□□ -0.65
RTN4-205ENST00000394609 POTEIP0CG38 1075 aa11□□□□□ -0.65
RTN4-205ENST00000394609 TNIKQ9UKE5 1360 aa11□□□□□ -0.65
RTN4-205ENST00000394609 MNX1P50219 401 aaPredicted RBP10.98□□□□□ -0.65
RTN4-205ENST00000394609 IGF1RP08069 1367 aa10.98□□□□□ -0.65
RTN4-205ENST00000394609 RANGAP1P46060 587 aaPredicted RBP10.98□□□□□ -0.65
RTN4-205ENST00000394609 CEP162Q5TB80 1403 aa10.96□□□□□ -0.65
RTN4-205ENST00000394609 ERCC6Q03468 1493 aa10.96□□□□□ -0.65
RTN4-205ENST00000394609 PRXQ9BXM0 1461 aa10.96□□□□□ -0.65
RTN4-205ENST00000394609 MRC2Q9UBG0 1479 aa10.96□□□□□ -0.66
RTN4-205ENST00000394609 KIF21BO75037 1637 aa10.95□□□□□ -0.66
RTN4-205ENST00000394609 TDRD9Q8NDG6 1382 aaKnown RBP10.95□□□□□ -0.66
RTN4-205ENST00000394609 ABCA10Q8WWZ4 1543 aa10.94□□□□□ -0.66
RTN4-205ENST00000394609 PLEKHG5O94827 1062 aa10.94□□□□□ -0.66
RTN4-205ENST00000394609 CARMIL1Q5VZK9 1371 aa10.92□□□□□ -0.66
RTN4-205ENST00000394609 GALR2O43603 387 aaPredicted RBP10.92□□□□□ -0.66
RTN4-205ENST00000394609 PHF12Q96QT6 1004 aa10.91□□□□□ -0.66
RTN4-205ENST00000394609 HRCP23327 699 aa10.91□□□□□ -0.66
RTN4-205ENST00000394609 PPARGC1BQ86YN6 1023 aaKnown RBP10.89□□□□□ -0.67
RTN4-205ENST00000394609 ERICH3Q5RHP9 1530 aa10.89□□□□□ -0.67
RTN4-205ENST00000394609 PCGF6Q9BYE7 350 aa10.88□□□□□ -0.67
RTN4-205ENST00000394609 CLIP1P30622 1438 aa10.88□□□□□ -0.67
RTN4-205ENST00000394609 GAPVD1Q14C86 1478 aa10.87□□□□□ -0.67
RTN4-205ENST00000394609 WDR62O43379 1518 aa10.86□□□□□ -0.67
RTN4-205ENST00000394609 AQRO60306 1485 aaKnown RBP eCLIP10.86□□□□□ -0.677e-8■■■■■ 28.3
RTN4-205ENST00000394609 TARBP1Q13395 1621 aaKnown RBP10.85□□□□□ -0.67
RTN4-205ENST00000394609 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
RTN4-205ENST00000394609 MIER1Q8N108 512 aa10.83□□□□□ -0.68
RTN4-205ENST00000394609 WDR97A6NE52 1622 aa10.83□□□□□ -0.68
RTN4-205ENST00000394609 ZNF608Q9ULD9 1512 aaPredicted RBP10.82□□□□□ -0.68
RTN4-205ENST00000394609 ABCA5Q8WWZ7 1642 aa10.81□□□□□ -0.68
RTN4-205ENST00000394609 THOC2Q8NI27 1593 aaKnown RBP10.81□□□□□ -0.68
RTN4-205ENST00000394609 TTBK1Q5TCY1 1321 aaPredicted RBP10.81□□□□□ -0.68
RTN4-205ENST00000394609 TRIM26Q12899 539 aaPredicted RBP10.81□□□□□ -0.68
RTN4-205ENST00000394609 TSPYL2Q9H2G4 693 aaPredicted RBP10.81□□□□□ -0.68
RTN4-205ENST00000394609 MS4A3Q96HJ5 214 aa10.78□□□□□ -0.68
RTN4-205ENST00000394609 ZBTB47Q9UFB7 747 aaPredicted RBP10.77□□□□□ -0.69
RTN4-205ENST00000394609 GRIN2BQ13224 1484 aa10.77□□□□□ -0.69
RTN4-205ENST00000394609 CUL7Q14999 1698 aa10.76□□□□□ -0.69
RTN4-205ENST00000394609 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
RTN4-205ENST00000394609 PLCD3Q8N3E9 789 aa10.76□□□□□ -0.69
RTN4-205ENST00000394609 CCDC61Q9Y6R9 512 aa10.76□□□□□ -0.69
RTN4-205ENST00000394609 VPS8Q8N3P4 1428 aa10.76□□□□□ -0.69
RTN4-205ENST00000394609 ARAP1Q96P48 1450 aa10.74□□□□□ -0.69
RTN4-205ENST00000394609 ASTLQ6HA08 431 aaPredicted RBP10.74□□□□□ -0.69
RTN4-205ENST00000394609 ARHGAP35Q9NRY4 1499 aa10.74□□□□□ -0.69
RTN4-205ENST00000394609 FHAD1B1AJZ9 1412 aa10.74□□□□□ -0.69
RTN4-205ENST00000394609 PELP1Q8IZL8 1130 aaKnown RBP10.73□□□□□ -0.69
RTN4-205ENST00000394609 SLC39A7Q92504 469 aa10.73□□□□□ -0.69
RTN4-205ENST00000394609 ATMINO43313 823 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms