RNA–Protein interactions for RNA: ENST00000394609.6

RTN4-205, Transcript of reticulon 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN4, Length 1,898 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-205ENST00000394609 AEBP2Q6ZN18 517 aaPredicted RBP21.89■■□□□ 1.09
RTN4-205ENST00000394609 CHIC1Q5VXU3 224 aa20.86■□□□□ 0.93
RTN4-205ENST00000394609 SENP3Q9H4L4 574 aaPredicted RBP18.84■□□□□ 0.61
RTN4-205ENST00000394609 PHF23Q9BUL5 403 aaPredicted RBP18.51■□□□□ 0.55
RTN4-205ENST00000394609 FOXD1Q16676 465 aa17.46■□□□□ 0.39
RTN4-205ENST00000394609 PLPPR3Q6T4P5 718 aa16.69■□□□□ 0.26
RTN4-205ENST00000394609 MSH5O43196 834 aa16.48■□□□□ 0.23
RTN4-205ENST00000394609 PIAS4Q8N2W9 510 aaPredicted RBP16.35■□□□□ 0.21
RTN4-205ENST00000394609 PPP6R1Q9UPN7 881 aa16.22■□□□□ 0.19
RTN4-205ENST00000394609 ADRA2BP18089 450 aa16.2■□□□□ 0.18
RTN4-205ENST00000394609 POTEDQ86YR6 584 aa16.04■□□□□ 0.16
RTN4-205ENST00000394609 NISCHQ9Y2I1 1504 aa15.46■□□□□ 0.07
RTN4-205ENST00000394609 SCAF1Q9H7N4 1312 aaKnown RBP15.01□□□□□ -0.01
RTN4-205ENST00000394609 DMRT2Q9Y5R5 561 aa14.91□□□□□ -0.02
RTN4-205ENST00000394609 MAPK8IP2Q13387 824 aaPredicted RBP14.86□□□□□ -0.03
RTN4-205ENST00000394609 PPP4R3CPQ6ZMV5 832 aa14.59□□□□□ -0.07
RTN4-205ENST00000394609 CNKSR2Q8WXI2 1034 aa14.37□□□□□ -0.11
RTN4-205ENST00000394609 HOXD11P31277 338 aaPredicted RBP14.33□□□□□ -0.11
RTN4-205ENST00000394609 DCAF8L1A6NGE4 600 aa14.27□□□□□ -0.13
RTN4-205ENST00000394609 RNF216Q9NWF9 866 aaPredicted RBP14.24□□□□□ -0.13
RTN4-205ENST00000394609 CACNB1Q02641 598 aaPredicted RBP14.12□□□□□ -0.15
RTN4-205ENST00000394609 NCBP3Q53F19 620 aaKnown RBP14.12□□□□□ -0.15
RTN4-205ENST00000394609 RNF39Q9H2S5 420 aa13.98□□□□□ -0.17
RTN4-205ENST00000394609 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
RTN4-205ENST00000394609 C1QBPQ07021 282 aaKnown RBP13.84□□□□□ -0.19
RTN4-205ENST00000394609 NPM3O75607 178 aaKnown RBP13.78□□□□□ -0.2
RTN4-205ENST00000394609 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
RTN4-205ENST00000394609 KCNA4P22459 653 aa13.44□□□□□ -0.26
RTN4-205ENST00000394609 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
RTN4-205ENST00000394609 U3KPZ7 1027 aaPredicted RBP13.32□□□□□ -0.28
RTN4-205ENST00000394609 CAPN15O75808 1086 aa13.16□□□□□ -0.3
RTN4-205ENST00000394609 APLP2Q06481 763 aa13.16□□□□□ -0.3
RTN4-205ENST00000394609 SLC4A2P04920 1241 aa13.13□□□□□ -0.31
RTN4-205ENST00000394609 SPINK5Q9NQ38 1064 aaPredicted RBP13.1□□□□□ -0.31
RTN4-205ENST00000394609 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.08□□□□□ -0.32
RTN4-205ENST00000394609 HNRNPUL2Q1KMD3 747 aaKnown RBP13.08□□□□□ -0.32
RTN4-205ENST00000394609 DSG3P32926 999 aa13.07□□□□□ -0.32
RTN4-205ENST00000394609 ZNF219Q9P2Y4 722 aaPredicted RBP12.98□□□□□ -0.33
RTN4-205ENST00000394609 ZCCHC6Q5VYS8 1495 aaKnown RBP12.98□□□□□ -0.33
RTN4-205ENST00000394609 DCAF8L2P0C7V8 631 aa12.97□□□□□ -0.33
RTN4-205ENST00000394609 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
RTN4-205ENST00000394609 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
RTN4-205ENST00000394609 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
RTN4-205ENST00000394609 ABCC9O60706 1549 aa12.81□□□□□ -0.36
RTN4-205ENST00000394609 ABCB7O75027 752 aa12.8□□□□□ -0.36
RTN4-205ENST00000394609 SHROOM4Q9ULL8 1493 aa12.8□□□□□ -0.36
RTN4-205ENST00000394609 SLC4A1APQ9BWU0 796 aaKnown RBP12.76□□□□□ -0.37
RTN4-205ENST00000394609 DCAF1Q9Y4B6 1507 aa12.71□□□□□ -0.37
RTN4-205ENST00000394609 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
RTN4-205ENST00000394609 POTEHQ6S545 545 aa12.59□□□□□ -0.39
RTN4-205ENST00000394609 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
RTN4-205ENST00000394609 POLA2Q14181 598 aa12.55□□□□□ -0.4
RTN4-205ENST00000394609 MYO15BQ96JP2 1530 aa12.54□□□□□ -0.4
RTN4-205ENST00000394609 NACADO15069 1562 aa12.5□□□□□ -0.41
RTN4-205ENST00000394609 ZBTB12Q9Y330 459 aaPredicted RBP12.45□□□□□ -0.42
RTN4-205ENST00000394609 SCRIBQ14160 1630 aa12.42□□□□□ -0.42
RTN4-205ENST00000394609 RB1CC1Q8TDY2 1594 aa12.4□□□□□ -0.42
RTN4-205ENST00000394609 ATF5Q9Y2D1 282 aaPredicted RBP12.38□□□□□ -0.43
RTN4-205ENST00000394609 SUPT5HO00267 1087 aaKnown RBP12.34□□□□□ -0.43
RTN4-205ENST00000394609 ATXN8OSP0DMR3 200 aa12.33□□□□□ -0.44
RTN4-205ENST00000394609 ZBTB22O15209 634 aa12.31□□□□□ -0.44
RTN4-205ENST00000394609 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
RTN4-205ENST00000394609 CHRDL2Q6WN34 429 aa12.24□□□□□ -0.45
RTN4-205ENST00000394609 PABPN1Q86U42 306 aaKnown RBP eCLIP12.17□□□□□ -0.46
RTN4-205ENST00000394609 OSCARQ8IYS5 282 aa12.14□□□□□ -0.47
RTN4-205ENST00000394609 UNC13AQ9UPW8 1703 aa12.09□□□□□ -0.47
RTN4-205ENST00000394609 FBLN2P98095 1184 aa12.09□□□□□ -0.47
RTN4-205ENST00000394609 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
RTN4-205ENST00000394609 REM2Q8IYK8 340 aaPredicted RBP12.08□□□□□ -0.48
RTN4-205ENST00000394609 RSF1Q96T23 1441 aaPredicted RBP12.06□□□□□ -0.48
RTN4-205ENST00000394609 BICRAQ9NZM4 1560 aa12.04□□□□□ -0.48
RTN4-205ENST00000394609 SPDYE2BA6NHP3 402 aa12□□□□□ -0.49
RTN4-205ENST00000394609 SPDYE6P0CI01 402 aa12□□□□□ -0.49
RTN4-205ENST00000394609 SPDYE2Q495Y8 402 aa12□□□□□ -0.49
RTN4-205ENST00000394609 MROH2BQ7Z745 1585 aa11.98□□□□□ -0.49
RTN4-205ENST00000394609 PITPNM1O00562 1244 aa11.93□□□□□ -0.5
RTN4-205ENST00000394609 PIP4P2Q8N4L2 257 aa11.92□□□□□ -0.5
RTN4-205ENST00000394609 BAZ1AQ9NRL2 1556 aaPredicted RBP11.92□□□□□ -0.5
RTN4-205ENST00000394609 FXR2P51116 673 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■□□□□ 9.1
RTN4-205ENST00000394609 WIZO95785 1651 aa11.86□□□□□ -0.51
RTN4-205ENST00000394609 SMARCA4P51532 1647 aa11.86□□□□□ -0.51
RTN4-205ENST00000394609 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
RTN4-205ENST00000394609 SPDYE1Q8NFV5 336 aaPredicted RBP11.8□□□□□ -0.52
RTN4-205ENST00000394609 SP7Q8TDD2 431 aaPredicted RBP11.8□□□□□ -0.52
RTN4-205ENST00000394609 ZNF692Q9BU19 519 aaPredicted RBP11.8□□□□□ -0.52
RTN4-205ENST00000394609 SSUH2Q9Y2M2 353 aa11.79□□□□□ -0.52
RTN4-205ENST00000394609 CSRNP3Q8WYN3 585 aa11.74□□□□□ -0.53
RTN4-205ENST00000394609 HAX1O00165 279 aa11.73□□□□□ -0.53
RTN4-205ENST00000394609 CLEC11AQ9Y240 323 aa11.72□□□□□ -0.53
RTN4-205ENST00000394609 ATAD2BQ9ULI0 1458 aa11.71□□□□□ -0.54
RTN4-205ENST00000394609 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.54
RTN4-205ENST00000394609 EIF4G1Q04637 1599 aaKnown RBP11.69□□□□□ -0.54
RTN4-205ENST00000394609 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
RTN4-205ENST00000394609 CCDC88BA6NC98 1476 aa11.66□□□□□ -0.54
RTN4-205ENST00000394609 PRKAR2AP13861 404 aaKnown RBP11.65□□□□□ -0.54
RTN4-205ENST00000394609 SMARCA2P51531 1590 aa11.65□□□□□ -0.54
RTN4-205ENST00000394609 BAZ1BQ9UIG0 1483 aaKnown RBP11.64□□□□□ -0.55
RTN4-205ENST00000394609 NCAPD3P42695 1498 aa11.59□□□□□ -0.55
RTN4-205ENST00000394609 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
RTN4-205ENST00000394609 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms