RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 WIZO95785 1651 aa10.35□□□□□ -0.75
VTI1A-201ENST00000393077 HSP90AA1P07900 732 aaKnown RBP10.34□□□□□ -0.75
VTI1A-201ENST00000393077 P3H3Q8IVL6 736 aa10.34□□□□□ -0.75
VTI1A-201ENST00000393077 PDE4CQ08493 712 aa10.33□□□□□ -0.76
VTI1A-201ENST00000393077 HNRNPUQ00839 825 aaKnown RBP eCLIP10.32□□□□□ -0.76
VTI1A-201ENST00000393077 CCDC88BA6NC98 1476 aa10.32□□□□□ -0.76
VTI1A-201ENST00000393077 DDX10Q13206 875 aaKnown RBP10.31□□□□□ -0.76
VTI1A-201ENST00000393077 PPP4R2Q9NY27 417 aa10.31□□□□□ -0.76
VTI1A-201ENST00000393077 WRNQ14191 1432 aaPredicted RBP eCLIP10.3□□□□□ -0.76
VTI1A-201ENST00000393077 FBLN2P98095 1184 aa10.28□□□□□ -0.76
VTI1A-201ENST00000393077 IPO9Q96P70 1041 aaKnown RBP10.28□□□□□ -0.76
VTI1A-201ENST00000393077 USP35Q9P2H5 1018 aa10.26□□□□□ -0.77
VTI1A-201ENST00000393077 BRPF3Q9ULD4 1205 aa10.26□□□□□ -0.77
VTI1A-201ENST00000393077 B4GALNT3Q6L9W6 998 aa10.26□□□□□ -0.77
VTI1A-201ENST00000393077 ABCC8Q09428 1581 aa10.25□□□□□ -0.77
VTI1A-201ENST00000393077 ARXQ96QS3 562 aa10.25□□□□□ -0.77
VTI1A-201ENST00000393077 SOGA1O94964 1423 aa10.24□□□□□ -0.77
VTI1A-201ENST00000393077 FAM50AQ14320 339 aaKnown RBP10.24□□□□□ -0.77
VTI1A-201ENST00000393077 PNNQ9H307 717 aaKnown RBP10.24□□□□□ -0.77
VTI1A-201ENST00000393077 ARID3CA6NKF2 412 aa10.23□□□□□ -0.77
VTI1A-201ENST00000393077 PAK3O75914 559 aaPredicted RBP10.23□□□□□ -0.77
VTI1A-201ENST00000393077 ARID4BQ4LE39 1312 aaPredicted RBP10.23□□□□□ -0.77
VTI1A-201ENST00000393077 SMARCA4P51532 1647 aa10.21□□□□□ -0.77
VTI1A-201ENST00000393077 GSE1Q14687 1217 aa10.21□□□□□ -0.77
VTI1A-201ENST00000393077 TNNT2P45379 298 aaPredicted RBP10.21□□□□□ -0.78
VTI1A-201ENST00000393077 KCNH8Q96L42 1107 aa10.2□□□□□ -0.78
VTI1A-201ENST00000393077 TOP2AP11388 1531 aaKnown RBP10.2□□□□□ -0.78
VTI1A-201ENST00000393077 ATAD2BQ9ULI0 1458 aa10.2□□□□□ -0.78
VTI1A-201ENST00000393077 NCLP19338 710 aaKnown RBP10.2□□□□□ -0.78
VTI1A-201ENST00000393077 DDRGK1Q96HY6 314 aa10.18□□□□□ -0.78
VTI1A-201ENST00000393077 CEP162Q5TB80 1403 aa10.17□□□□□ -0.78
VTI1A-201ENST00000393077 PDIA4P13667 645 aaKnown RBP10.17□□□□□ -0.78
VTI1A-201ENST00000393077 SMARCA2P51531 1590 aa10.17□□□□□ -0.78
VTI1A-201ENST00000393077 CLIP1P30622 1438 aa10.16□□□□□ -0.78
VTI1A-201ENST00000393077 RBM10P98175 930 aaKnown RBP10.15□□□□□ -0.78
VTI1A-201ENST00000393077 EEA1Q15075 1411 aa10.15□□□□□ -0.78
VTI1A-201ENST00000393077 RRP9O43818 475 aaKnown RBP10.14□□□□□ -0.79
VTI1A-201ENST00000393077 CDK11BP21127 795 aaKnown RBP10.14□□□□□ -0.79
VTI1A-201ENST00000393077 FAM43AQ8N2R8 423 aa10.14□□□□□ -0.79
VTI1A-201ENST00000393077 GOLGA3Q08378 1498 aa10.13□□□□□ -0.79
VTI1A-201ENST00000393077 TRIM44Q96DX7 344 aaPredicted RBP10.11□□□□□ -0.79
VTI1A-201ENST00000393077 TNIKQ9UKE5 1360 aa10.11□□□□□ -0.79
VTI1A-201ENST00000393077 CNGB1Q14028 1251 aaPredicted RBP10.11□□□□□ -0.79
VTI1A-201ENST00000393077 AMER1Q5JTC6 1135 aaPredicted RBP10.11□□□□□ -0.79
VTI1A-201ENST00000393077 KIF27Q86VH2 1401 aa10.11□□□□□ -0.79
VTI1A-201ENST00000393077 L1TD1Q5T7N2 865 aaKnown RBP10.1□□□□□ -0.79
VTI1A-201ENST00000393077 ZNF326Q5BKZ1 582 aaKnown RBP10.09□□□□□ -0.79
VTI1A-201ENST00000393077 FAM9BQ8IZU0 186 aa10.08□□□□□ -0.8
VTI1A-201ENST00000393077 CEP164Q9UPV0 1460 aa10.08□□□□□ -0.8
VTI1A-201ENST00000393077 CCER2I3L3R5 266 aa10.08□□□□□ -0.8
VTI1A-201ENST00000393077 RUSC2Q8N2Y8 1516 aa10.07□□□□□ -0.8
VTI1A-201ENST00000393077 ANP32BQ92688 251 aaKnown RBP10.07□□□□□ -0.8
VTI1A-201ENST00000393077 C11orf95C9JLR9 678 aaPredicted RBP10.06□□□□□ -0.8
VTI1A-201ENST00000393077 BCL11BQ9C0K0 894 aaPredicted RBP10.06□□□□□ -0.8
VTI1A-201ENST00000393077 FGD1P98174 961 aa10.06□□□□□ -0.8
VTI1A-201ENST00000393077 FRAT1Q92837 279 aaPredicted RBP10.05□□□□□ -0.8
VTI1A-201ENST00000393077 CANXP27824 592 aaKnown RBP10.05□□□□□ -0.8
VTI1A-201ENST00000393077 CUX2O14529 1486 aa10.05□□□□□ -0.8
VTI1A-201ENST00000393077 HIRIP3Q9BW71 556 aaPredicted RBP10.04□□□□□ -0.8
VTI1A-201ENST00000393077 CADPSQ9ULU8 1353 aa10.04□□□□□ -0.8
VTI1A-201ENST00000393077 ARID3AQ99856 593 aa10.02□□□□□ -0.8
VTI1A-201ENST00000393077 BICRAQ9NZM4 1560 aa10.02□□□□□ -0.8
VTI1A-201ENST00000393077 CHMP7Q8WUX9 453 aaPredicted RBP10.01□□□□□ -0.81
VTI1A-201ENST00000393077 EIF4G1Q04637 1599 aaKnown RBP10□□□□□ -0.81
VTI1A-201ENST00000393077 CARMIL1Q5VZK9 1371 aa10□□□□□ -0.81
VTI1A-201ENST00000393077 AAMPQ13685 434 aa10□□□□□ -0.81
VTI1A-201ENST00000393077 NFKBIBQ15653 356 aa10□□□□□ -0.81
VTI1A-201ENST00000393077 TAF7LQ5H9L4 462 aa10□□□□□ -0.81
VTI1A-201ENST00000393077 BBXQ8WY36 941 aaPredicted RBP10□□□□□ -0.81
VTI1A-201ENST00000393077 ZNF777Q9ULD5 760 aaPredicted RBP9.99□□□□□ -0.81
VTI1A-201ENST00000393077 TDRD9Q8NDG6 1382 aaKnown RBP9.99□□□□□ -0.81
VTI1A-201ENST00000393077 POLR3GLQ9BT43 218 aa9.99□□□□□ -0.81
VTI1A-201ENST00000393077 NCAPD3P42695 1498 aa9.98□□□□□ -0.81
VTI1A-201ENST00000393077 MRS2Q9HD23 443 aa9.97□□□□□ -0.81
VTI1A-201ENST00000393077 WASHC2AQ641Q2 1341 aa9.96□□□□□ -0.81
VTI1A-201ENST00000393077 TCERG1O14776 1098 aaKnown RBP9.96□□□□□ -0.82
VTI1A-201ENST00000393077 CHIC2Q9UKJ5 165 aa9.95□□□□□ -0.82
VTI1A-201ENST00000393077 RAPGEF2Q9Y4G8 1499 aa9.95□□□□□ -0.82
VTI1A-201ENST00000393077 WASHC2CQ9Y4E1 1318 aa9.95□□□□□ -0.82
VTI1A-201ENST00000393077 MTUS2Q5JR59 1369 aa9.95□□□□□ -0.82
VTI1A-201ENST00000393077 ERCC6Q03468 1493 aa9.94□□□□□ -0.82
VTI1A-201ENST00000393077 RGS3P49796 1198 aa9.94□□□□□ -0.82
VTI1A-201ENST00000393077 GOLGA6L3A6NEY3 463 aa9.93□□□□□ -0.82
VTI1A-201ENST00000393077 BECN1Q14457 450 aa9.93□□□□□ -0.82
VTI1A-201ENST00000393077 PDS5BQ9NTI5 1447 aa9.93□□□□□ -0.82
VTI1A-201ENST00000393077 KANK4Q5T7N3 995 aaPredicted RBP9.92□□□□□ -0.82
VTI1A-201ENST00000393077 SLC4A3P48751 1232 aa9.92□□□□□ -0.82
VTI1A-201ENST00000393077 PDE4AP27815 886 aa9.92□□□□□ -0.82
VTI1A-201ENST00000393077 PHF23Q9BUL5 403 aaPredicted RBP9.92□□□□□ -0.82
VTI1A-201ENST00000393077 PAXIP1Q6ZW49 1069 aaPredicted RBP9.92□□□□□ -0.82
VTI1A-201ENST00000393077 PDCL3Q9H2J4 239 aa9.92□□□□□ -0.82
VTI1A-201ENST00000393077 FAM13BQ9NYF5 915 aa9.92□□□□□ -0.82
VTI1A-201ENST00000393077 DNAJC5BQ9UF47 199 aa9.92□□□□□ -0.82
VTI1A-201ENST00000393077 FANCD2Q9BXW9 1451 aa9.91□□□□□ -0.82
VTI1A-201ENST00000393077 TPM2P07951 284 aa9.91□□□□□ -0.82
VTI1A-201ENST00000393077 SIN3AQ96ST3 1273 aa9.91□□□□□ -0.82
VTI1A-201ENST00000393077 MYH16Q9H6N6 1097 aa9.91□□□□□ -0.82
VTI1A-201ENST00000393077 NAP1L2Q9ULW6 460 aaPredicted RBP9.91□□□□□ -0.82
VTI1A-201ENST00000393077 DNTTIP2Q5QJE6 756 aaKnown RBP9.9□□□□□ -0.82
VTI1A-201ENST00000393077 VPS8Q8N3P4 1428 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms