RNA–Protein interactions for RNA: ENST00000377107.6

USP11-204, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP11, Length 3,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-204ENST00000377107 CLSPNQ9HAW4 1339 aa18.53■□□□□ 0.56
USP11-204ENST00000377107 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.56
USP11-204ENST00000377107 FHOD3Q2V2M9 1422 aa18.52■□□□□ 0.56
USP11-204ENST00000377107 PHLDB1Q86UU1 1377 aa18.49■□□□□ 0.55
USP11-204ENST00000377107 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
USP11-204ENST00000377107 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
USP11-204ENST00000377107 RRBP1Q9P2E9 1410 aaKnown RBP18.47■□□□□ 0.55
USP11-204ENST00000377107 NESP48681 1621 aa18.45■□□□□ 0.54
USP11-204ENST00000377107 FANCD2Q9BXW9 1451 aa18.45■□□□□ 0.54
USP11-204ENST00000377107 DNAJC5BQ9UF47 199 aa18.45■□□□□ 0.54
USP11-204ENST00000377107 SETD5Q9C0A6 1442 aa18.43■□□□□ 0.54
USP11-204ENST00000377107 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
USP11-204ENST00000377107 MTUS2Q5JR59 1369 aa18.42■□□□□ 0.54
USP11-204ENST00000377107 CNGB1Q14028 1251 aaPredicted RBP18.4■□□□□ 0.54
USP11-204ENST00000377107 RRP7BPQ9NSQ0 103 aa18.39■□□□□ 0.53
USP11-204ENST00000377107 FHAD1B1AJZ9 1412 aa18.37■□□□□ 0.53
USP11-204ENST00000377107 LRRC9Q6ZRR7 1453 aa18.36■□□□□ 0.53
USP11-204ENST00000377107 SUPT16HQ9Y5B9 1047 aaKnown RBP18.35■□□□□ 0.53
USP11-204ENST00000377107 CC2D2AQ9P2K1 1620 aa18.34■□□□□ 0.53
USP11-204ENST00000377107 TONSLQ96HA7 1378 aa18.33■□□□□ 0.52
USP11-204ENST00000377107 ANP32CO43423 234 aa18.31■□□□□ 0.52
USP11-204ENST00000377107 TIAM1Q13009 1591 aa18.3■□□□□ 0.52
USP11-204ENST00000377107 FKBP8Q14318 412 aa18.29■□□□□ 0.52
USP11-204ENST00000377107 POLA1P09884 1462 aaPredicted RBP18.27■□□□□ 0.52
USP11-204ENST00000377107 PPP1R15AO75807 674 aaPredicted RBP18.25■□□□□ 0.51
USP11-204ENST00000377107 NEFLP07196 543 aa18.24■□□□□ 0.51
USP11-204ENST00000377107 POLR3GLQ9BT43 218 aa18.24■□□□□ 0.51
USP11-204ENST00000377107 FBLN2P98095 1184 aa18.24■□□□□ 0.51
USP11-204ENST00000377107 FOXD1Q16676 465 aa18.24■□□□□ 0.51
USP11-204ENST00000377107 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
USP11-204ENST00000377107 PCF11O94913 1555 aaKnown RBP18.22■□□□□ 0.51
USP11-204ENST00000377107 WDR97A6NE52 1622 aa18.2■□□□□ 0.5
USP11-204ENST00000377107 MAPKBP1O60336 1514 aa18.2■□□□□ 0.5
USP11-204ENST00000377107 ZNF326Q5BKZ1 582 aaKnown RBP18.16■□□□□ 0.5
USP11-204ENST00000377107 ZNF777Q9ULD5 760 aaPredicted RBP18.16■□□□□ 0.5
USP11-204ENST00000377107 FMN1Q68DA7 1419 aa18.16■□□□□ 0.5
USP11-204ENST00000377107 IRX6P78412 446 aaPredicted RBP18.14■□□□□ 0.49
USP11-204ENST00000377107 FGD6Q6ZV73 1430 aa18.14■□□□□ 0.49
USP11-204ENST00000377107 CASKIN1Q8WXD9 1431 aa18.13■□□□□ 0.49
USP11-204ENST00000377107 HNRNPUQ00839 825 aaKnown RBP eCLIP18.11■□□□□ 0.49
USP11-204ENST00000377107 ABCA10Q8WWZ4 1543 aa18.11■□□□□ 0.49
USP11-204ENST00000377107 GAPVD1Q14C86 1478 aa18.11■□□□□ 0.49
USP11-204ENST00000377107 DNMBPQ6XZF7 1577 aa18.11■□□□□ 0.49
USP11-204ENST00000377107 SENP3-EIF4A1A0A087X0R7 540 aa18.1■□□□□ 0.49
USP11-204ENST00000377107 CCDC18Q5T9S5 1454 aa18.09■□□□□ 0.49
USP11-204ENST00000377107 FYCO1Q9BQS8 1478 aa18.08■□□□□ 0.48
USP11-204ENST00000377107 URB2Q14146 1524 aaKnown RBP18.07■□□□□ 0.48
USP11-204ENST00000377107 PTPRKQ15262 1439 aa18.07■□□□□ 0.48
USP11-204ENST00000377107 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
USP11-204ENST00000377107 PDS5BQ9NTI5 1447 aa18.06■□□□□ 0.48
USP11-204ENST00000377107 TIMELESSQ9UNS1 1208 aa18.05■□□□□ 0.48
USP11-204ENST00000377107 NCOA2Q15596 1464 aa18.04■□□□□ 0.48
USP11-204ENST00000377107 MAP3K1Q13233 1512 aa18.04■□□□□ 0.48
USP11-204ENST00000377107 HSPA5P11021 654 aaKnown RBP18.04■□□□□ 0.48
USP11-204ENST00000377107 FAM9BQ8IZU0 186 aa18.04■□□□□ 0.48
USP11-204ENST00000377107 TSHZ2Q9NRE2 1034 aa18.02■□□□□ 0.48
USP11-204ENST00000377107 ZNF644Q9H582 1327 aaPredicted RBP18.02■□□□□ 0.48
USP11-204ENST00000377107 SLC4A1APQ9BWU0 796 aaKnown RBP18.01■□□□□ 0.47
USP11-204ENST00000377107 MPHOSPH9Q99550 1183 aa18■□□□□ 0.47
USP11-204ENST00000377107 MYOM3Q5VTT5 1437 aa17.99■□□□□ 0.47
USP11-204ENST00000377107 EIF4G2P78344 907 aaKnown RBP eCLIP17.99■□□□□ 0.47
USP11-204ENST00000377107 L3MBTL2Q969R5 705 aa17.99■□□□□ 0.47
USP11-204ENST00000377107 PRDM2Q13029 1718 aa17.98■□□□□ 0.47
USP11-204ENST00000377107 EFCAB5A4FU69 1503 aa17.97■□□□□ 0.47
USP11-204ENST00000377107 UACAQ9BZF9 1416 aa17.95■□□□□ 0.46
USP11-204ENST00000377107 NAIPQ13075 1403 aa17.95■□□□□ 0.46
USP11-204ENST00000377107 CHMP7Q8WUX9 453 aaPredicted RBP17.95■□□□□ 0.46
USP11-204ENST00000377107 CCER2I3L3R5 266 aa17.93■□□□□ 0.46
USP11-204ENST00000377107 HFM1A2PYH4 1435 aa17.93■□□□□ 0.46
USP11-204ENST00000377107 CFAP43Q8NDM7 1665 aa17.92■□□□□ 0.46
USP11-204ENST00000377107 CDK11AQ9UQ88 783 aaPredicted RBP17.92■□□□□ 0.46
USP11-204ENST00000377107 SNAPC4Q5SXM2 1469 aa17.91■□□□□ 0.46
USP11-204ENST00000377107 MRS2Q9HD23 443 aa17.9■□□□□ 0.46
USP11-204ENST00000377107 CFDP1Q9UEE9 299 aaPredicted RBP17.9■□□□□ 0.46
USP11-204ENST00000377107 CDK13Q14004 1512 aaKnown RBP17.9■□□□□ 0.46
USP11-204ENST00000377107 WASHC2AQ641Q2 1341 aa17.89■□□□□ 0.45
USP11-204ENST00000377107 CUL7Q14999 1698 aa17.89■□□□□ 0.45
USP11-204ENST00000377107 CCDC184Q52MB2 194 aa17.88■□□□□ 0.45
USP11-204ENST00000377107 KDM2AQ9Y2K7 1162 aa17.88■□□□□ 0.45
USP11-204ENST00000377107 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.86■□□□□ 0.45
USP11-204ENST00000377107 C11orf95C9JLR9 678 aaPredicted RBP17.84■□□□□ 0.45
USP11-204ENST00000377107 CTTNBP2Q8WZ74 1663 aa17.84■□□□□ 0.45
USP11-204ENST00000377107 GRIN2BQ13224 1484 aa17.83■□□□□ 0.44
USP11-204ENST00000377107 LAMC3Q9Y6N6 1575 aa17.83■□□□□ 0.44
USP11-204ENST00000377107 PTPN23Q9H3S7 1636 aa17.83■□□□□ 0.44
USP11-204ENST00000377107 MYT1Q01538 1121 aa17.82■□□□□ 0.44
USP11-204ENST00000377107 NBPF8Q3BBV2 869 aa17.82■□□□□ 0.44
USP11-204ENST00000377107 MAGI3Q5TCQ9 1506 aa17.79■□□□□ 0.44
USP11-204ENST00000377107 EPRSP07814 1512 aaKnown RBP17.79■□□□□ 0.44
USP11-204ENST00000377107 ZNF608Q9ULD9 1512 aaPredicted RBP17.79■□□□□ 0.44
USP11-204ENST00000377107 SUPT6HQ7KZ85 1726 aaKnown RBP17.78■□□□□ 0.44
USP11-204ENST00000377107 EHBP1L1Q8N3D4 1523 aa17.78■□□□□ 0.44
USP11-204ENST00000377107 PKD2Q13563 968 aa17.78■□□□□ 0.44
USP11-204ENST00000377107 SALL2Q9Y467 1007 aaPredicted RBP17.77■□□□□ 0.43
USP11-204ENST00000377107 RBM19Q9Y4C8 960 aaKnown RBP17.76■□□□□ 0.43
USP11-204ENST00000377107 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.75■□□□□ 0.438e-7■■□□□ 14.2
USP11-204ENST00000377107 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
USP11-204ENST00000377107 PLEKHD1A6NEE1 506 aa17.73■□□□□ 0.43
USP11-204ENST00000377107 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
USP11-204ENST00000377107 THOC2Q8NI27 1593 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms