RNA–Protein interactions for RNA: ENST00000376895.2

SSX3-203, Transcript of SSX family member 3, humanhuman

TSL 5

Gene SSX3, Length 799 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-203ENST00000376895 CLEC11AQ9Y240 323 aa11.7□□□□□ -0.54
SSX3-203ENST00000376895 RNF25Q96BH1 459 aaPredicted RBP11.69□□□□□ -0.54
SSX3-203ENST00000376895 PRR29P0C7W0 189 aa11.68□□□□□ -0.54
SSX3-203ENST00000376895 DCAF8Q5TAQ9 597 aa11.68□□□□□ -0.54
SSX3-203ENST00000376895 FAM212AQ96EL1 285 aa11.68□□□□□ -0.54
SSX3-203ENST00000376895 TSHZ2Q9NRE2 1034 aa11.67□□□□□ -0.54
SSX3-203ENST00000376895 RIOK3O14730 519 aaKnown RBP11.65□□□□□ -0.54
SSX3-203ENST00000376895 DNAJC5Q9H3Z4 198 aa11.65□□□□□ -0.54
SSX3-203ENST00000376895 CREBZFQ9NS37 354 aa11.64□□□□□ -0.55
SSX3-203ENST00000376895 REM2Q8IYK8 340 aaPredicted RBP11.61□□□□□ -0.55
SSX3-203ENST00000376895 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
SSX3-203ENST00000376895 VGFO15240 615 aaPredicted RBP11.57□□□□□ -0.56
SSX3-203ENST00000376895 STK25O00506 426 aa11.55□□□□□ -0.56
SSX3-203ENST00000376895 PRKCSHP14314 528 aaPredicted RBP11.55□□□□□ -0.56
SSX3-203ENST00000376895 RASEFQ8IZ41 740 aa11.54□□□□□ -0.56
SSX3-203ENST00000376895 CHRM1P11229 460 aaPredicted RBP11.53□□□□□ -0.56
SSX3-203ENST00000376895 NKX1-1Q15270 411 aaPredicted RBP11.52□□□□□ -0.57
SSX3-203ENST00000376895 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
SSX3-203ENST00000376895 PITPNM1O00562 1244 aa11.49□□□□□ -0.57
SSX3-203ENST00000376895 NBR1Q14596 966 aa11.49□□□□□ -0.57
SSX3-203ENST00000376895 SGIP1Q9BQI5 828 aa11.48□□□□□ -0.57
SSX3-203ENST00000376895 GTPBP6O43824 516 aaPredicted RBP11.47□□□□□ -0.57
SSX3-203ENST00000376895 RYDENQ9NUL5 291 aaKnown RBP11.47□□□□□ -0.57
SSX3-203ENST00000376895 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.45□□□□□ -0.58
SSX3-203ENST00000376895 ZFP91Q96JP5 570 aaPredicted RBP11.45□□□□□ -0.58
SSX3-203ENST00000376895 BCL11BQ9C0K0 894 aaPredicted RBP11.45□□□□□ -0.58
SSX3-203ENST00000376895 STK24Q9Y6E0 443 aa11.45□□□□□ -0.58
SSX3-203ENST00000376895 PYGBP11216 843 aa11.44□□□□□ -0.58
SSX3-203ENST00000376895 ZNF467Q7Z7K2 595 aaPredicted RBP11.35□□□□□ -0.59
SSX3-203ENST00000376895 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
SSX3-203ENST00000376895 TSPYL2Q9H2G4 693 aaPredicted RBP11.32□□□□□ -0.6
SSX3-203ENST00000376895 FARP1Q9Y4F1 1045 aaPredicted RBP11.3□□□□□ -0.6
SSX3-203ENST00000376895 PDAP1Q13442 181 aaKnown RBP11.28□□□□□ -0.6
SSX3-203ENST00000376895 P3H3Q8IVL6 736 aa11.25□□□□□ -0.61
SSX3-203ENST00000376895 PRKAR2AP13861 404 aaKnown RBP11.21□□□□□ -0.61
SSX3-203ENST00000376895 CCDC61Q9Y6R9 512 aa11.21□□□□□ -0.61
SSX3-203ENST00000376895 PAK3O75914 559 aaPredicted RBP11.2□□□□□ -0.62
SSX3-203ENST00000376895 ZNF579Q8NAF0 562 aaKnown RBP11.2□□□□□ -0.62
SSX3-203ENST00000376895 PCDHB8Q9UN66 801 aa11.2□□□□□ -0.62
SSX3-203ENST00000376895 PCDHB13Q9Y5F0 798 aa11.2□□□□□ -0.62
SSX3-203ENST00000376895 PSEN1P49768 467 aa11.17□□□□□ -0.62
SSX3-203ENST00000376895 WDR70Q9NW82 654 aa11.16□□□□□ -0.62
SSX3-203ENST00000376895 FXR2P51116 673 aaKnown RBP eCLIP11.13□□□□□ -0.63
SSX3-203ENST00000376895 MFRPQ9BY79 579 aa11.13□□□□□ -0.63
SSX3-203ENST00000376895 CADPS2Q86UW7 1296 aa11.11□□□□□ -0.63
SSX3-203ENST00000376895 IFNL1Q8IU54 200 aa11.09□□□□□ -0.63
SSX3-203ENST00000376895 KCNV2Q8TDN2 545 aa11.09□□□□□ -0.63
SSX3-203ENST00000376895 NLRP6P59044 892 aa11.05□□□□□ -0.64
SSX3-203ENST00000376895 CABP2Q9NPB3 220 aa11.05□□□□□ -0.64
SSX3-203ENST00000376895 SOX12O15370 315 aa11.04□□□□□ -0.64
SSX3-203ENST00000376895 MAP3K13O43283 966 aa11.04□□□□□ -0.64
SSX3-203ENST00000376895 EFCAB3Q8N7B9 438 aa11.04□□□□□ -0.64
SSX3-203ENST00000376895 KIF12Q96FN5 646 aa11.04□□□□□ -0.64
SSX3-203ENST00000376895 CHRDL2Q6WN34 429 aa11.03□□□□□ -0.64
SSX3-203ENST00000376895 FBXO22Q8NEZ5 403 aa11.01□□□□□ -0.65
SSX3-203ENST00000376895 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
SSX3-203ENST00000376895 TULP1O00294 542 aaPredicted RBP10.99□□□□□ -0.65
SSX3-203ENST00000376895 PHF8Q9UPP1 1060 aa10.99□□□□□ -0.65
SSX3-203ENST00000376895 PPP1R37O75864 691 aa10.98□□□□□ -0.65
SSX3-203ENST00000376895 LMOD2Q6P5Q4 547 aa10.98□□□□□ -0.65
SSX3-203ENST00000376895 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.65
SSX3-203ENST00000376895 CD44P16070 742 aaKnown RBP10.95□□□□□ -0.66
SSX3-203ENST00000376895 ARHGEF1Q92888 912 aaKnown RBP10.95□□□□□ -0.66
SSX3-203ENST00000376895 E2F4Q16254 413 aa10.94□□□□□ -0.66
SSX3-203ENST00000376895 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.93□□□□□ -0.66
SSX3-203ENST00000376895 GOLGA2Q08379 1002 aa10.92□□□□□ -0.66
SSX3-203ENST00000376895 PHF12Q96QT6 1004 aa10.91□□□□□ -0.66
SSX3-203ENST00000376895 MS4A4AQ96JQ5 239 aa10.86□□□□□ -0.67
SSX3-203ENST00000376895 TMEM106CQ9BVX2 250 aa10.86□□□□□ -0.67
SSX3-203ENST00000376895 NCKAP5LQ9HCH0 1330 aa10.85□□□□□ -0.67
SSX3-203ENST00000376895 PDE4AP27815 886 aa10.85□□□□□ -0.67
SSX3-203ENST00000376895 LARP6Q9BRS8 491 aaKnown RBP10.84□□□□□ -0.67
SSX3-203ENST00000376895 MFSD10Q14728 455 aa10.83□□□□□ -0.68
SSX3-203ENST00000376895 POTEHQ6S545 545 aa10.83□□□□□ -0.68
SSX3-203ENST00000376895 TESPA1A2RU30 521 aaPredicted RBP10.82□□□□□ -0.68
SSX3-203ENST00000376895 MKRN3Q13064 507 aaKnown RBP10.82□□□□□ -0.68
SSX3-203ENST00000376895 TMEM132AQ24JP5 1023 aa10.82□□□□□ -0.68
SSX3-203ENST00000376895 DDX27Q96GQ7 796 aaKnown RBP10.82□□□□□ -0.68
SSX3-203ENST00000376895 CRISPLD2Q9H0B8 497 aa10.82□□□□□ -0.68
SSX3-203ENST00000376895 MS4A3Q96HJ5 214 aa10.81□□□□□ -0.68
SSX3-203ENST00000376895 SEMA3EO15041 775 aa10.8□□□□□ -0.68
SSX3-203ENST00000376895 SMYD5Q6GMV2 418 aa10.78□□□□□ -0.68
SSX3-203ENST00000376895 ZC3H15Q8WU90 426 aaKnown RBP10.77□□□□□ -0.69
SSX3-203ENST00000376895 GTF3C3Q9Y5Q9 886 aa10.77□□□□□ -0.69
SSX3-203ENST00000376895 TIE1P35590 1138 aa10.76□□□□□ -0.69
SSX3-203ENST00000376895 TRPC6Q9Y210 931 aa10.76□□□□□ -0.69
SSX3-203ENST00000376895 ARIH1Q9Y4X5 557 aaPredicted RBP10.76□□□□□ -0.69
SSX3-203ENST00000376895 CAMK2BQ13554 666 aa10.74□□□□□ -0.69
SSX3-203ENST00000376895 C19orf67A6NJJ6 358 aa10.73□□□□□ -0.69
SSX3-203ENST00000376895 ERICH6Q7L0X2 663 aa10.72□□□□□ -0.69
SSX3-203ENST00000376895 TTLL13PA6NNM8 815 aa10.71□□□□□ -0.69
SSX3-203ENST00000376895 TIMELESSQ9UNS1 1208 aa10.71□□□□□ -0.69
SSX3-203ENST00000376895 BRPF1P55201 1214 aaPredicted RBP10.7□□□□□ -0.7
SSX3-203ENST00000376895 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.7□□□□□ -0.7
SSX3-203ENST00000376895 PPP1R15BQ5SWA1 713 aa10.69□□□□□ -0.7
SSX3-203ENST00000376895 ILDR1Q86SU0 546 aaPredicted RBP10.68□□□□□ -0.7
SSX3-203ENST00000376895 SLC24A3Q9HC58 644 aa10.66□□□□□ -0.7
SSX3-203ENST00000376895 GPHNQ9NQX3 736 aaPredicted RBP10.66□□□□□ -0.7
SSX3-203ENST00000376895 BMP2KQ9NSY1 1161 aaPredicted RBP10.66□□□□□ -0.7
SSX3-203ENST00000376895 NEUROD2Q15784 382 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms