RNA–Protein interactions for RNA: ENST00000371122.8

SMARCA1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCA1, Length 4,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-202ENST00000371122 ZNF777Q9ULD5 760 aaPredicted RBP12.9□□□□□ -0.34
SMARCA1-202ENST00000371122 DDX10Q13206 875 aaKnown RBP12.88□□□□□ -0.35
SMARCA1-202ENST00000371122 CHIC2Q9UKJ5 165 aa12.87□□□□□ -0.35
SMARCA1-202ENST00000371122 ERCC6Q03468 1493 aa12.86□□□□□ -0.35
SMARCA1-202ENST00000371122 BCL11AQ9H165 835 aa12.86□□□□□ -0.35
SMARCA1-202ENST00000371122 MIER1Q8N108 512 aa12.85□□□□□ -0.35
SMARCA1-202ENST00000371122 ANP32CO43423 234 aa12.84□□□□□ -0.35
SMARCA1-202ENST00000371122 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
SMARCA1-202ENST00000371122 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
SMARCA1-202ENST00000371122 SALL2Q9Y467 1007 aaPredicted RBP12.81□□□□□ -0.36
SMARCA1-202ENST00000371122 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
SMARCA1-202ENST00000371122 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
SMARCA1-202ENST00000371122 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
SMARCA1-202ENST00000371122 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.36
SMARCA1-202ENST00000371122 SENP3Q9H4L4 574 aaPredicted RBP12.77□□□□□ -0.37
SMARCA1-202ENST00000371122 DAXXQ9UER7 740 aaPredicted RBP12.76□□□□□ -0.37
SMARCA1-202ENST00000371122 FKBP8Q14318 412 aa12.75□□□□□ -0.37
SMARCA1-202ENST00000371122 CLSPNQ9HAW4 1339 aa12.75□□□□□ -0.37
SMARCA1-202ENST00000371122 IRX6P78412 446 aaPredicted RBP12.75□□□□□ -0.37
SMARCA1-202ENST00000371122 EIF4G3O43432 1585 aaKnown RBP12.72□□□□□ -0.37
SMARCA1-202ENST00000371122 FAM9BQ8IZU0 186 aa12.72□□□□□ -0.37
SMARCA1-202ENST00000371122 PBRM1Q86U86 1689 aa12.72□□□□□ -0.37
SMARCA1-202ENST00000371122 HNRNPUQ00839 825 aaKnown RBP eCLIP12.69□□□□□ -0.38
SMARCA1-202ENST00000371122 RRP7BPQ9NSQ0 103 aa12.66□□□□□ -0.38
SMARCA1-202ENST00000371122 ERICH3Q5RHP9 1530 aa12.65□□□□□ -0.38
SMARCA1-202ENST00000371122 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
SMARCA1-202ENST00000371122 KDM2AQ9Y2K7 1162 aa12.64□□□□□ -0.39
SMARCA1-202ENST00000371122 SOGA1O94964 1423 aa12.64□□□□□ -0.39
SMARCA1-202ENST00000371122 ZNF608Q9ULD9 1512 aaPredicted RBP12.64□□□□□ -0.39
SMARCA1-202ENST00000371122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.63□□□□□ -0.391e-9■■□□□ 11.5
SMARCA1-202ENST00000371122 NPM2Q86SE8 214 aaKnown RBP12.62□□□□□ -0.39
SMARCA1-202ENST00000371122 CLIP1P30622 1438 aa12.62□□□□□ -0.39
SMARCA1-202ENST00000371122 PLPPR3Q6T4P5 718 aa12.62□□□□□ -0.39
SMARCA1-202ENST00000371122 SIN3AQ96ST3 1273 aa12.62□□□□□ -0.39
SMARCA1-202ENST00000371122 TONSLQ96HA7 1378 aa12.61□□□□□ -0.39
SMARCA1-202ENST00000371122 CEP162Q5TB80 1403 aa12.61□□□□□ -0.39
SMARCA1-202ENST00000371122 CDK11AQ9UQ88 783 aaPredicted RBP12.61□□□□□ -0.39
SMARCA1-202ENST00000371122 CUL7Q14999 1698 aa12.6□□□□□ -0.39
SMARCA1-202ENST00000371122 ADAMTS12P58397 1594 aa12.6□□□□□ -0.39
SMARCA1-202ENST00000371122 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
SMARCA1-202ENST00000371122 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
SMARCA1-202ENST00000371122 RTL5Q5HYW3 569 aaPredicted RBP12.57□□□□□ -0.4
SMARCA1-202ENST00000371122 GRIN2BQ13224 1484 aa12.56□□□□□ -0.4
SMARCA1-202ENST00000371122 GAPVD1Q14C86 1478 aa12.55□□□□□ -0.4
SMARCA1-202ENST00000371122 SLC24A1O60721 1099 aa12.54□□□□□ -0.4
SMARCA1-202ENST00000371122 CHD1O14646 1710 aa12.53□□□□□ -0.4
SMARCA1-202ENST00000371122 EEA1Q15075 1411 aa12.52□□□□□ -0.41
SMARCA1-202ENST00000371122 AQRO60306 1485 aaKnown RBP eCLIP12.51□□□□□ -0.413e-12■□□□□ 9.6
SMARCA1-202ENST00000371122 MRS2Q9HD23 443 aa12.5□□□□□ -0.41
SMARCA1-202ENST00000371122 MTUS2Q5JR59 1369 aa12.5□□□□□ -0.41
SMARCA1-202ENST00000371122 RGL3Q3MIN7 710 aa12.5□□□□□ -0.41
SMARCA1-202ENST00000371122 KIF27Q86VH2 1401 aa12.49□□□□□ -0.41
SMARCA1-202ENST00000371122 KIF21BO75037 1637 aa12.49□□□□□ -0.41
SMARCA1-202ENST00000371122 PRXQ9BXM0 1461 aa12.49□□□□□ -0.41
SMARCA1-202ENST00000371122 CLASP1Q7Z460 1538 aa12.49□□□□□ -0.41
SMARCA1-202ENST00000371122 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
SMARCA1-202ENST00000371122 IGF1RP08069 1367 aa12.48□□□□□ -0.41
SMARCA1-202ENST00000371122 RUSC2Q8N2Y8 1516 aa12.48□□□□□ -0.41
SMARCA1-202ENST00000371122 KCNH8Q96L42 1107 aa12.48□□□□□ -0.41
SMARCA1-202ENST00000371122 SNAPC4Q5SXM2 1469 aa12.48□□□□□ -0.41
SMARCA1-202ENST00000371122 KANK4Q5T7N3 995 aaPredicted RBP12.47□□□□□ -0.41
SMARCA1-202ENST00000371122 SHROOM2Q13796 1616 aa12.47□□□□□ -0.41
SMARCA1-202ENST00000371122 CANXP27824 592 aaKnown RBP12.47□□□□□ -0.41
SMARCA1-202ENST00000371122 FHAD1B1AJZ9 1412 aa12.46□□□□□ -0.42
SMARCA1-202ENST00000371122 TDRD9Q8NDG6 1382 aaKnown RBP12.45□□□□□ -0.42
SMARCA1-202ENST00000371122 NUP160Q12769 1436 aa12.44□□□□□ -0.42
SMARCA1-202ENST00000371122 TMC1Q8TDI8 760 aa12.44□□□□□ -0.42
SMARCA1-202ENST00000371122 NBR1Q14596 966 aa12.43□□□□□ -0.42
SMARCA1-202ENST00000371122 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
SMARCA1-202ENST00000371122 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
SMARCA1-202ENST00000371122 CHMP7Q8WUX9 453 aaPredicted RBP12.42□□□□□ -0.42
SMARCA1-202ENST00000371122 PLEKHG5O94827 1062 aa12.42□□□□□ -0.42
SMARCA1-202ENST00000371122 CTTNBP2Q8WZ74 1663 aa12.41□□□□□ -0.42
SMARCA1-202ENST00000371122 FOXD1Q16676 465 aa12.4□□□□□ -0.42
SMARCA1-202ENST00000371122 SUPT16HQ9Y5B9 1047 aaKnown RBP12.4□□□□□ -0.42
SMARCA1-202ENST00000371122 GOLGA3Q08378 1498 aa12.39□□□□□ -0.43
SMARCA1-202ENST00000371122 TNIKQ9UKE5 1360 aa12.39□□□□□ -0.43
SMARCA1-202ENST00000371122 TSPY4P0CV99 314 aa12.37□□□□□ -0.43
SMARCA1-202ENST00000371122 TSPY10P0CW01 314 aa12.37□□□□□ -0.43
SMARCA1-202ENST00000371122 CCDC136Q96JN2 1154 aa12.37□□□□□ -0.43
SMARCA1-202ENST00000371122 ARXQ96QS3 562 aa12.36□□□□□ -0.43
SMARCA1-202ENST00000371122 RAPGEF2Q9Y4G8 1499 aa12.35□□□□□ -0.43
SMARCA1-202ENST00000371122 EIF4G2P78344 907 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMARCA1-202ENST00000371122 ANP32AP39687 249 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-202ENST00000371122 CARMIL1Q5VZK9 1371 aa12.32□□□□□ -0.44
SMARCA1-202ENST00000371122 UGGT2Q9NYU1 1516 aa12.31□□□□□ -0.44
SMARCA1-202ENST00000371122 STAG3Q9UJ98 1225 aa12.3□□□□□ -0.44
SMARCA1-202ENST00000371122 SAMD9Q5K651 1589 aa12.3□□□□□ -0.44
SMARCA1-202ENST00000371122 KIAA0586Q9BVV6 1533 aa12.3□□□□□ -0.44
SMARCA1-202ENST00000371122 CFDP1Q9UEE9 299 aaPredicted RBP12.28□□□□□ -0.44
SMARCA1-202ENST00000371122 IQGAP2Q13576 1575 aa12.27□□□□□ -0.44
SMARCA1-202ENST00000371122 NEUROD2Q15784 382 aa12.27□□□□□ -0.45
SMARCA1-202ENST00000371122 B4GALNT3Q6L9W6 998 aa12.26□□□□□ -0.45
SMARCA1-202ENST00000371122 TNNT2P45379 298 aaPredicted RBP12.25□□□□□ -0.45
SMARCA1-202ENST00000371122 ZBTB47Q9UFB7 747 aaPredicted RBP12.24□□□□□ -0.45
SMARCA1-202ENST00000371122 PLEKHD1A6NEE1 506 aa12.24□□□□□ -0.45
SMARCA1-202ENST00000371122 CCNB3Q8WWL7 1395 aa12.23□□□□□ -0.45
SMARCA1-202ENST00000371122 CARD11Q9BXL7 1154 aa12.22□□□□□ -0.45
SMARCA1-202ENST00000371122 DISP1Q96F81 1524 aa12.22□□□□□ -0.45
SMARCA1-202ENST00000371122 NEFMP07197 916 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms