RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 ZNF219Q9P2Y4 722 aaPredicted RBP15.14■□□□□ 0.01
TPM3-213ENST00000368545 TAOK2Q9UL54 1235 aa15.14■□□□□ 0.01
TPM3-213ENST00000368545 MROH2BQ7Z745 1585 aa15.13■□□□□ 0.01
TPM3-213ENST00000368545 PRDM2Q13029 1718 aa15.1■□□□□ 0.01
TPM3-213ENST00000368545 IFNLR1Q8IU57 520 aaPredicted RBP15.09■□□□□ 0.01
TPM3-213ENST00000368545 WDR97A6NE52 1622 aa15.07■□□□□ 0
TPM3-213ENST00000368545 VSIG10Q8N0Z9 540 aa15.07■□□□□ 0
TPM3-213ENST00000368545 CHD1O14646 1710 aa15.06■□□□□ 0
TPM3-213ENST00000368545 PROM2Q8N271 834 aa15.06■□□□□ 0
TPM3-213ENST00000368545 EIF4G3O43432 1585 aaKnown RBP15.05■□□□□ -0
TPM3-213ENST00000368545 PKD2Q13563 968 aa15.04■□□□□ -0
TPM3-213ENST00000368545 WIZO95785 1651 aa15.03■□□□□ -0
TPM3-213ENST00000368545 ILDR1Q86SU0 546 aaPredicted RBP15.02□□□□□ -0.01
TPM3-213ENST00000368545 ZNF608Q9ULD9 1512 aaPredicted RBP15□□□□□ -0.01
TPM3-213ENST00000368545 SYNJ1O43426 1573 aa15□□□□□ -0.01
TPM3-213ENST00000368545 MKRN4PQ13434 485 aaPredicted RBP14.99□□□□□ -0.01
TPM3-213ENST00000368545 CLASP1Q7Z460 1538 aa14.99□□□□□ -0.01
TPM3-213ENST00000368545 TOPBP1Q92547 1522 aa14.93□□□□□ -0.02
TPM3-213ENST00000368545 KDM2AQ9Y2K7 1162 aa14.93□□□□□ -0.02
TPM3-213ENST00000368545 TPRNQ4KMQ1 711 aa14.92□□□□□ -0.02
TPM3-213ENST00000368545 DNMBPQ6XZF7 1577 aa14.91□□□□□ -0.02
TPM3-213ENST00000368545 TOP2AP11388 1531 aaKnown RBP14.9□□□□□ -0.02
TPM3-213ENST00000368545 TARBP1Q13395 1621 aaKnown RBP14.87□□□□□ -0.03
TPM3-213ENST00000368545 MAGI1Q96QZ7 1491 aaPredicted RBP14.87□□□□□ -0.03
TPM3-213ENST00000368545 FBLN2P98095 1184 aa14.86□□□□□ -0.03
TPM3-213ENST00000368545 ERCC6L2Q5T890 1561 aa14.83□□□□□ -0.03
TPM3-213ENST00000368545 GAPVD1Q14C86 1478 aa14.83□□□□□ -0.03
TPM3-213ENST00000368545 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.79□□□□□ -0.04
TPM3-213ENST00000368545 BBXQ8WY36 941 aaPredicted RBP14.78□□□□□ -0.04
TPM3-213ENST00000368545 NPM1P06748 294 aaKnown RBP eCLIP14.77□□□□□ -0.04
TPM3-213ENST00000368545 AQRO60306 1485 aaKnown RBP eCLIP14.77□□□□□ -0.045e-7■□□□□ 9.2
TPM3-213ENST00000368545 PAXIP1Q6ZW49 1069 aaPredicted RBP14.77□□□□□ -0.05
TPM3-213ENST00000368545 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
TPM3-213ENST00000368545 APLP2Q06481 763 aa14.75□□□□□ -0.05
TPM3-213ENST00000368545 CHMP7Q8WUX9 453 aaPredicted RBP14.73□□□□□ -0.05
TPM3-213ENST00000368545 CFAP44Q96MT7 982 aa14.72□□□□□ -0.05
TPM3-213ENST00000368545 GRIN2BQ13224 1484 aa14.72□□□□□ -0.05
TPM3-213ENST00000368545 SNAPC4Q5SXM2 1469 aa14.72□□□□□ -0.05
TPM3-213ENST00000368545 CCDC88BA6NC98 1476 aa14.69□□□□□ -0.06
TPM3-213ENST00000368545 POLA1P09884 1462 aaPredicted RBP14.68□□□□□ -0.06
TPM3-213ENST00000368545 KIF13AQ9H1H9 1805 aa14.68□□□□□ -0.06
TPM3-213ENST00000368545 ECM2O94769 699 aaPredicted RBP14.67□□□□□ -0.06
TPM3-213ENST00000368545 FBXO41Q8TF61 875 aa14.65□□□□□ -0.06
TPM3-213ENST00000368545 SOGA1O94964 1423 aa14.63□□□□□ -0.07
TPM3-213ENST00000368545 KDM4FA0A1W2PPD8 638 aa14.62□□□□□ -0.07
TPM3-213ENST00000368545 SPOCK2Q92563 424 aa14.62□□□□□ -0.07
TPM3-213ENST00000368545 KDM6BO15054 1643 aa14.61□□□□□ -0.07
TPM3-213ENST00000368545 ABCC10Q5T3U5 1492 aa14.61□□□□□ -0.07
TPM3-213ENST00000368545 TSHZ2Q9NRE2 1034 aa14.6□□□□□ -0.07
TPM3-213ENST00000368545 MAPKBP1O60336 1514 aa14.59□□□□□ -0.07
TPM3-213ENST00000368545 KLHL34Q8N239 644 aa14.59□□□□□ -0.07
TPM3-213ENST00000368545 POLA2Q14181 598 aa14.56□□□□□ -0.08
TPM3-213ENST00000368545 SHROOM2Q13796 1616 aa14.56□□□□□ -0.08
TPM3-213ENST00000368545 RGL2O15211 777 aa14.56□□□□□ -0.08
TPM3-213ENST00000368545 SPRYD3Q8NCJ5 442 aa14.54□□□□□ -0.08
TPM3-213ENST00000368545 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
TPM3-213ENST00000368545 PBRM1Q86U86 1689 aa14.52□□□□□ -0.09
TPM3-213ENST00000368545 CEP170Q5SW79 1584 aa14.52□□□□□ -0.09
TPM3-213ENST00000368545 HECW2Q9P2P5 1572 aa14.5□□□□□ -0.09
TPM3-213ENST00000368545 NUP160Q12769 1436 aa14.49□□□□□ -0.09
TPM3-213ENST00000368545 DIP2BQ9P265 1576 aa14.49□□□□□ -0.09
TPM3-213ENST00000368545 RAD54L2Q9Y4B4 1467 aa14.49□□□□□ -0.09
TPM3-213ENST00000368545 SPINK5Q9NQ38 1064 aaPredicted RBP14.47□□□□□ -0.09
TPM3-213ENST00000368545 FGD5Q6ZNL6 1462 aa14.46□□□□□ -0.09
TPM3-213ENST00000368545 GRIN2AQ12879 1464 aa14.45□□□□□ -0.1
TPM3-213ENST00000368545 FAM69CQ0P6D2 419 aa14.45□□□□□ -0.1
TPM3-213ENST00000368545 ADGRL1O94910 1474 aa14.45□□□□□ -0.1
TPM3-213ENST00000368545 TOP2BQ02880 1626 aa14.44□□□□□ -0.1
TPM3-213ENST00000368545 ABCA5Q8WWZ7 1642 aa14.41□□□□□ -0.1
TPM3-213ENST00000368545 LMTK3Q96Q04 1460 aa14.4□□□□□ -0.1
TPM3-213ENST00000368545 TIMELESSQ9UNS1 1208 aa14.4□□□□□ -0.1
TPM3-213ENST00000368545 ABCA10Q8WWZ4 1543 aa14.4□□□□□ -0.1
TPM3-213ENST00000368545 CHGAP10645 457 aaKnown RBP14.36□□□□□ -0.11
TPM3-213ENST00000368545 SOCS7O14512 581 aa14.36□□□□□ -0.11
TPM3-213ENST00000368545 GLI2P10070 1586 aa14.36□□□□□ -0.11
TPM3-213ENST00000368545 ADAMTS12P58397 1594 aa14.36□□□□□ -0.11
TPM3-213ENST00000368545 NBR1Q14596 966 aa14.35□□□□□ -0.11
TPM3-213ENST00000368545 FHAD1B1AJZ9 1412 aa14.34□□□□□ -0.11
TPM3-213ENST00000368545 PLCD3Q8N3E9 789 aa14.33□□□□□ -0.11
TPM3-213ENST00000368545 TULP1O00294 542 aaPredicted RBP14.33□□□□□ -0.12
TPM3-213ENST00000368545 WRNQ14191 1432 aaPredicted RBP eCLIP14.31□□□□□ -0.12
TPM3-213ENST00000368545 STAG3Q9UJ98 1225 aa14.31□□□□□ -0.12
TPM3-213ENST00000368545 PRG4Q92954 1404 aaPredicted RBP14.3□□□□□ -0.12
TPM3-213ENST00000368545 TEX14Q8IWB6 1497 aa14.29□□□□□ -0.12
TPM3-213ENST00000368545 CAPN15O75808 1086 aa14.29□□□□□ -0.12
TPM3-213ENST00000368545 CUX1P39880 1505 aa14.28□□□□□ -0.12
TPM3-213ENST00000368545 ERICH3Q5RHP9 1530 aa14.27□□□□□ -0.13
TPM3-213ENST00000368545 PLB1Q6P1J6 1458 aa14.26□□□□□ -0.13
TPM3-213ENST00000368545 BIVM-ERCC5R4GMW8 1640 aa14.25□□□□□ -0.13
TPM3-213ENST00000368545 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
TPM3-213ENST00000368545 MIER1Q8N108 512 aa14.24□□□□□ -0.13
TPM3-213ENST00000368545 ADCY10Q96PN6 1610 aa14.24□□□□□ -0.13
TPM3-213ENST00000368545 CIZ1Q9ULV3 898 aaPredicted RBP14.23□□□□□ -0.13
TPM3-213ENST00000368545 KIAA0586Q9BVV6 1533 aa14.22□□□□□ -0.13
TPM3-213ENST00000368545 GTF3C3Q9Y5Q9 886 aa14.22□□□□□ -0.13
TPM3-213ENST00000368545 JPH4Q96JJ6 628 aa14.21□□□□□ -0.13
TPM3-213ENST00000368545 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
TPM3-213ENST00000368545 TSPOAP1O95153 1857 aa14.19□□□□□ -0.14
TPM3-213ENST00000368545 ABCB7O75027 752 aa14.17□□□□□ -0.14
TPM3-213ENST00000368545 EEA1Q15075 1411 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms