RNA–Protein interactions for RNA: ENST00000367042.5

CD46-208, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-208ENST00000367042 ARAP1Q96P48 1450 aa11.6□□□□□ -0.55
CD46-208ENST00000367042 ERICH3Q5RHP9 1530 aa11.6□□□□□ -0.55
CD46-208ENST00000367042 FANCD2Q9BXW9 1451 aa11.59□□□□□ -0.55
CD46-208ENST00000367042 NESP48681 1621 aa11.59□□□□□ -0.55
CD46-208ENST00000367042 KIF27Q86VH2 1401 aa11.59□□□□□ -0.55
CD46-208ENST00000367042 ANP32CO43423 234 aa11.58□□□□□ -0.55
CD46-208ENST00000367042 ANP32EQ9BTT0 268 aa11.58□□□□□ -0.55
CD46-208ENST00000367042 FGD5Q6ZNL6 1462 aa11.56□□□□□ -0.56
CD46-208ENST00000367042 DNAJC5BQ9UF47 199 aa11.56□□□□□ -0.56
CD46-208ENST00000367042 LAMC3Q9Y6N6 1575 aa11.56□□□□□ -0.56
CD46-208ENST00000367042 DNMBPQ6XZF7 1577 aa11.54□□□□□ -0.56
CD46-208ENST00000367042 RRBP1Q9P2E9 1410 aaKnown RBP11.53□□□□□ -0.56
CD46-208ENST00000367042 IRX6P78412 446 aaPredicted RBP11.52□□□□□ -0.56
CD46-208ENST00000367042 TOPBP1Q92547 1522 aa11.51□□□□□ -0.57
CD46-208ENST00000367042 CUX2O14529 1486 aa11.51□□□□□ -0.57
CD46-208ENST00000367042 SETD5Q9C0A6 1442 aa11.51□□□□□ -0.57
CD46-208ENST00000367042 IGF1RP08069 1367 aa11.5□□□□□ -0.57
CD46-208ENST00000367042 ERICH6Q7L0X2 663 aa11.5□□□□□ -0.57
CD46-208ENST00000367042 ARHGAP35Q9NRY4 1499 aa11.5□□□□□ -0.57
CD46-208ENST00000367042 CNGB1Q14028 1251 aaPredicted RBP11.48□□□□□ -0.57
CD46-208ENST00000367042 POLA1P09884 1462 aaPredicted RBP11.48□□□□□ -0.57
CD46-208ENST00000367042 TONSLQ96HA7 1378 aa11.48□□□□□ -0.57
CD46-208ENST00000367042 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
CD46-208ENST00000367042 HNRNPUQ00839 825 aaKnown RBP eCLIP11.48□□□□□ -0.57
CD46-208ENST00000367042 RBM19Q9Y4C8 960 aaKnown RBP11.47□□□□□ -0.57
CD46-208ENST00000367042 ABCA10Q8WWZ4 1543 aa11.47□□□□□ -0.57
CD46-208ENST00000367042 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.58
CD46-208ENST00000367042 RAD54L2Q9Y4B4 1467 aa11.46□□□□□ -0.58
CD46-208ENST00000367042 PHLDB1Q86UU1 1377 aa11.45□□□□□ -0.58
CD46-208ENST00000367042 WDR97A6NE52 1622 aa11.45□□□□□ -0.58
CD46-208ENST00000367042 CARMIL1Q5VZK9 1371 aa11.44□□□□□ -0.58
CD46-208ENST00000367042 PPP1R15AO75807 674 aaPredicted RBP11.43□□□□□ -0.58
CD46-208ENST00000367042 PDS5BQ9NTI5 1447 aa11.42□□□□□ -0.58
CD46-208ENST00000367042 MAPKBP1O60336 1514 aa11.41□□□□□ -0.58
CD46-208ENST00000367042 CHIC2Q9UKJ5 165 aa11.4□□□□□ -0.58
CD46-208ENST00000367042 CDK11AQ9UQ88 783 aaPredicted RBP11.4□□□□□ -0.58
CD46-208ENST00000367042 BCL11AQ9H165 835 aa11.39□□□□□ -0.59
CD46-208ENST00000367042 ARID3CA6NKF2 412 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 CCER2I3L3R5 266 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 LRRC9Q6ZRR7 1453 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 FHOD3Q2V2M9 1422 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 POLR3GLQ9BT43 218 aa11.38□□□□□ -0.59
CD46-208ENST00000367042 FAM9BQ8IZU0 186 aa11.37□□□□□ -0.59
CD46-208ENST00000367042 FHAD1B1AJZ9 1412 aa11.36□□□□□ -0.59
CD46-208ENST00000367042 CUL7Q14999 1698 aa11.36□□□□□ -0.59
CD46-208ENST00000367042 RRP7BPQ9NSQ0 103 aa11.36□□□□□ -0.59
CD46-208ENST00000367042 MTUS2Q5JR59 1369 aa11.36□□□□□ -0.59
CD46-208ENST00000367042 TIAM1Q13009 1591 aa11.36□□□□□ -0.59
CD46-208ENST00000367042 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
CD46-208ENST00000367042 TIMELESSQ9UNS1 1208 aa11.35□□□□□ -0.59
CD46-208ENST00000367042 SENP3-EIF4A1A0A087X0R7 540 aa11.33□□□□□ -0.6
CD46-208ENST00000367042 TDRD9Q8NDG6 1382 aaKnown RBP11.3□□□□□ -0.6
CD46-208ENST00000367042 CTTNBP2Q8WZ74 1663 aa11.3□□□□□ -0.6
CD46-208ENST00000367042 GAPVD1Q14C86 1478 aa11.29□□□□□ -0.6
CD46-208ENST00000367042 MRC2Q9UBG0 1479 aa11.29□□□□□ -0.6
CD46-208ENST00000367042 HSPA5P11021 654 aaKnown RBP11.29□□□□□ -0.6
CD46-208ENST00000367042 FOXD1Q16676 465 aa11.29□□□□□ -0.6
CD46-208ENST00000367042 MRS2Q9HD23 443 aa11.29□□□□□ -0.6
CD46-208ENST00000367042 B4GALNT3Q6L9W6 998 aa11.28□□□□□ -0.6
CD46-208ENST00000367042 EIF4G2P78344 907 aaKnown RBP eCLIP11.27□□□□□ -0.61
CD46-208ENST00000367042 CCDC18Q5T9S5 1454 aa11.27□□□□□ -0.61
CD46-208ENST00000367042 MSH5O43196 834 aa11.27□□□□□ -0.61
CD46-208ENST00000367042 ZNF326Q5BKZ1 582 aaKnown RBP11.27□□□□□ -0.61
CD46-208ENST00000367042 PCF11O94913 1555 aaKnown RBP11.26□□□□□ -0.61
CD46-208ENST00000367042 WDR62O43379 1518 aa11.26□□□□□ -0.61
CD46-208ENST00000367042 PBRM1Q86U86 1689 aa11.25□□□□□ -0.61
CD46-208ENST00000367042 MAP3K1Q13233 1512 aa11.24□□□□□ -0.61
CD46-208ENST00000367042 CCDC184Q52MB2 194 aa11.24□□□□□ -0.61
CD46-208ENST00000367042 EFCAB5A4FU69 1503 aa11.24□□□□□ -0.61
CD46-208ENST00000367042 FGD6Q6ZV73 1430 aa11.24□□□□□ -0.61
CD46-208ENST00000367042 WASHC2AQ641Q2 1341 aa11.23□□□□□ -0.61
CD46-208ENST00000367042 NBR1Q14596 966 aa11.22□□□□□ -0.61
CD46-208ENST00000367042 PPP4R2Q9NY27 417 aa11.21□□□□□ -0.61
CD46-208ENST00000367042 SAMD9Q5K651 1589 aa11.21□□□□□ -0.62
CD46-208ENST00000367042 AQRO60306 1485 aaKnown RBP eCLIP11.2□□□□□ -0.625e-23■■■■■ 36
CD46-208ENST00000367042 CFAP43Q8NDM7 1665 aa11.2□□□□□ -0.62
CD46-208ENST00000367042 UACAQ9BZF9 1416 aa11.2□□□□□ -0.62
CD46-208ENST00000367042 ADAMTS12P58397 1594 aa11.19□□□□□ -0.62
CD46-208ENST00000367042 THOC2Q8NI27 1593 aaKnown RBP11.19□□□□□ -0.62
CD46-208ENST00000367042 L3MBTL2Q969R5 705 aa11.19□□□□□ -0.62
CD46-208ENST00000367042 FMN1Q68DA7 1419 aa11.19□□□□□ -0.62
CD46-208ENST00000367042 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
CD46-208ENST00000367042 PTPRKQ15262 1439 aa11.18□□□□□ -0.62
CD46-208ENST00000367042 CASKIN1Q8WXD9 1431 aa11.18□□□□□ -0.62
CD46-208ENST00000367042 ZNF608Q9ULD9 1512 aaPredicted RBP11.18□□□□□ -0.62
CD46-208ENST00000367042 FYCO1Q9BQS8 1478 aa11.17□□□□□ -0.62
CD46-208ENST00000367042 MPHOSPH9Q99550 1183 aa11.16□□□□□ -0.62
CD46-208ENST00000367042 PRKRIP1Q9H875 184 aaPredicted RBP11.16□□□□□ -0.62
CD46-208ENST00000367042 GRIN2BQ13224 1484 aa11.16□□□□□ -0.62
CD46-208ENST00000367042 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
CD46-208ENST00000367042 HFM1A2PYH4 1435 aa11.15□□□□□ -0.62
CD46-208ENST00000367042 FANCIQ9NVI1 1328 aa11.15□□□□□ -0.62
CD46-208ENST00000367042 C11orf95C9JLR9 678 aaPredicted RBP11.15□□□□□ -0.62
CD46-208ENST00000367042 NAIPQ13075 1403 aa11.15□□□□□ -0.62
CD46-208ENST00000367042 SLC4A1APQ9BWU0 796 aaKnown RBP11.15□□□□□ -0.62
CD46-208ENST00000367042 LRRIQ1Q96JM4 1722 aa11.14□□□□□ -0.63
CD46-208ENST00000367042 CCDC136Q96JN2 1154 aa11.14□□□□□ -0.63
CD46-208ENST00000367042 NCOA2Q15596 1464 aa11.14□□□□□ -0.63
CD46-208ENST00000367042 SALL2Q9Y467 1007 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms