RNA–Protein interactions for RNA: ENST00000353411.10

SKP1-202, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SKP1, Length 9,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-202ENST00000353411 ZNF326Q5BKZ1 582 aaKnown RBP6.74□□□□□ -1.33
SKP1-202ENST00000353411 USP35Q9P2H5 1018 aa6.74□□□□□ -1.33
SKP1-202ENST00000353411 UBE2Q2Q8WVN8 375 aa6.74□□□□□ -1.33
SKP1-202ENST00000353411 HSP90AA2PQ14568 343 aaPredicted RBP6.74□□□□□ -1.33
SKP1-202ENST00000353411 L1TD1Q5T7N2 865 aaKnown RBP6.73□□□□□ -1.33
SKP1-202ENST00000353411 FANCIQ9NVI1 1328 aa6.73□□□□□ -1.33
SKP1-202ENST00000353411 VSIG10Q8N0Z9 540 aa6.73□□□□□ -1.33
SKP1-202ENST00000353411 PPP4R2Q9NY27 417 aa6.73□□□□□ -1.33
SKP1-202ENST00000353411 BECN1Q14457 450 aa6.71□□□□□ -1.34
SKP1-202ENST00000353411 TRIM52Q96A61 297 aa6.71□□□□□ -1.34
SKP1-202ENST00000353411 ANO8Q9HCE9 1232 aaPredicted RBP6.7□□□□□ -1.34
SKP1-202ENST00000353411 PNNQ9H307 717 aaKnown RBP6.69□□□□□ -1.34
SKP1-202ENST00000353411 ZCCHC6Q5VYS8 1495 aaKnown RBP6.69□□□□□ -1.34
SKP1-202ENST00000353411 CNGB1Q14028 1251 aaPredicted RBP6.66□□□□□ -1.34
SKP1-202ENST00000353411 DDX10Q13206 875 aaKnown RBP6.66□□□□□ -1.34
SKP1-202ENST00000353411 ATP1B4Q9UN42 357 aaPredicted RBP6.66□□□□□ -1.34
SKP1-202ENST00000353411 LAS1LQ9Y4W2 734 aaKnown RBP6.65□□□□□ -1.34
SKP1-202ENST00000353411 IPO9Q96P70 1041 aaKnown RBP6.65□□□□□ -1.34
SKP1-202ENST00000353411 ARID3AQ99856 593 aa6.63□□□□□ -1.35
SKP1-202ENST00000353411 IRX6P78412 446 aaPredicted RBP6.63□□□□□ -1.35
SKP1-202ENST00000353411 PLCB2Q00722 1185 aa6.63□□□□□ -1.35
SKP1-202ENST00000353411 SALL2Q9Y467 1007 aaPredicted RBP6.63□□□□□ -1.35
SKP1-202ENST00000353411 GOLGA6L22H0YM25 854 aa6.62□□□□□ -1.35
SKP1-202ENST00000353411 PHF23Q9BUL5 403 aaPredicted RBP6.62□□□□□ -1.35
SKP1-202ENST00000353411 PTMSP20962 102 aa6.62□□□□□ -1.35
SKP1-202ENST00000353411 SCRIBQ14160 1630 aa6.62□□□□□ -1.35
SKP1-202ENST00000353411 MSNP26038 577 aaKnown RBP6.62□□□□□ -1.35
SKP1-202ENST00000353411 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.61□□□□□ -1.35
SKP1-202ENST00000353411 CANXP27824 592 aaKnown RBP6.6□□□□□ -1.35
SKP1-202ENST00000353411 GSE1Q14687 1217 aa6.6□□□□□ -1.35
SKP1-202ENST00000353411 CCER2I3L3R5 266 aa6.6□□□□□ -1.35
SKP1-202ENST00000353411 A0A0U1RQG5 324 aaPredicted RBP6.59□□□□□ -1.35
SKP1-202ENST00000353411 DNTTIP2Q5QJE6 756 aaKnown RBP6.59□□□□□ -1.35
SKP1-202ENST00000353411 FAM9BQ8IZU0 186 aa6.59□□□□□ -1.35
SKP1-202ENST00000353411 PLEKHG5O94827 1062 aa6.58□□□□□ -1.36
SKP1-202ENST00000353411 ARID4BQ4LE39 1312 aaPredicted RBP6.58□□□□□ -1.36
SKP1-202ENST00000353411 TONSLQ96HA7 1378 aa6.58□□□□□ -1.36
SKP1-202ENST00000353411 RRP9O43818 475 aaKnown RBP6.57□□□□□ -1.36
SKP1-202ENST00000353411 MAP7D2Q96T17 732 aa6.57□□□□□ -1.36
SKP1-202ENST00000353411 CHAF1AQ13111 956 aaPredicted RBP6.57□□□□□ -1.36
SKP1-202ENST00000353411 MRS2Q9HD23 443 aa6.56□□□□□ -1.36
SKP1-202ENST00000353411 MTERF4Q7Z6M4 381 aaKnown RBP6.56□□□□□ -1.36
SKP1-202ENST00000353411 PABPN1Q86U42 306 aaKnown RBP eCLIP6.56□□□□□ -1.36
SKP1-202ENST00000353411 SMARCA2P51531 1590 aa6.55□□□□□ -1.36
SKP1-202ENST00000353411 PTMAP06454 111 aaKnown RBP6.55□□□□□ -1.36
SKP1-202ENST00000353411 FAM50AQ14320 339 aaKnown RBP6.55□□□□□ -1.36
SKP1-202ENST00000353411 TCERG1O14776 1098 aaKnown RBP6.55□□□□□ -1.36
SKP1-202ENST00000353411 TNNT3P45378 269 aaPredicted RBP6.55□□□□□ -1.36
SKP1-202ENST00000353411 B4GALNT3Q6L9W6 998 aa6.55□□□□□ -1.36
SKP1-202ENST00000353411 ERCC6Q03468 1493 aa6.55□□□□□ -1.36
SKP1-202ENST00000353411 FAM43AQ8N2R8 423 aa6.55□□□□□ -1.36
SKP1-202ENST00000353411 GOLGA6L3A6NEY3 463 aa6.54□□□□□ -1.36
SKP1-202ENST00000353411 HMGB1P09429 215 aaKnown RBP6.54□□□□□ -1.36
SKP1-202ENST00000353411 EEA1Q15075 1411 aa6.54□□□□□ -1.36
SKP1-202ENST00000353411 FBXO3Q9UK99 471 aa6.53□□□□□ -1.36
SKP1-202ENST00000353411 PDE4CQ08493 712 aa6.53□□□□□ -1.36
SKP1-202ENST00000353411 TMC1Q8TDI8 760 aa6.52□□□□□ -1.37
SKP1-202ENST00000353411 TPM2P07951 284 aa6.51□□□□□ -1.37
SKP1-202ENST00000353411 MYH16Q9H6N6 1097 aa6.5□□□□□ -1.37
SKP1-202ENST00000353411 IL27Q8NEV9 243 aa6.5□□□□□ -1.37
SKP1-202ENST00000353411 CFAP44Q96MT7 982 aa6.49□□□□□ -1.37
SKP1-202ENST00000353411 BAZ1AQ9NRL2 1556 aaPredicted RBP6.49□□□□□ -1.37
SKP1-202ENST00000353411 BAZ1BQ9UIG0 1483 aaKnown RBP6.49□□□□□ -1.37
SKP1-202ENST00000353411 PDIA4P13667 645 aaKnown RBP6.49□□□□□ -1.37
SKP1-202ENST00000353411 KAT6BQ8WYB5 2073 aa6.49□□□□□ -1.37
SKP1-202ENST00000353411 TAF3Q5VWG9 929 aa6.48□□□□□ -1.37
SKP1-202ENST00000353411 ZMYND15Q9H091 742 aa6.48□□□□□ -1.37
SKP1-202ENST00000353411 APPP05067 770 aa6.47□□□□□ -1.37
SKP1-202ENST00000353411 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.47□□□□□ -1.37
SKP1-202ENST00000353411 KIAA2012Q0VF49 1180 aa6.46□□□□□ -1.37
SKP1-202ENST00000353411 PDS5BQ9NTI5 1447 aa6.46□□□□□ -1.37
SKP1-202ENST00000353411 TMEM132AQ24JP5 1023 aa6.46□□□□□ -1.38
SKP1-202ENST00000353411 GBP4Q96PP9 640 aa6.46□□□□□ -1.38
SKP1-202ENST00000353411 CSPP1Q1MSJ5 1256 aa6.45□□□□□ -1.38
SKP1-202ENST00000353411 EIF4G2P78344 907 aaKnown RBP eCLIP6.45□□□□□ -1.38
SKP1-202ENST00000353411 CALRP27797 417 aaKnown RBP6.44□□□□□ -1.38
SKP1-202ENST00000353411 HSCBQ8IWL3 235 aa6.43□□□□□ -1.38
SKP1-202ENST00000353411 MS4A1P11836 297 aa6.43□□□□□ -1.38
SKP1-202ENST00000353411 DDX11L8A8MPP1 907 aa6.43□□□□□ -1.38
SKP1-202ENST00000353411 CEP162Q5TB80 1403 aa6.43□□□□□ -1.38
SKP1-202ENST00000353411 ZBTB7CA1YPR0 619 aa6.43□□□□□ -1.38
SKP1-202ENST00000353411 NPM1P06748 294 aaKnown RBP eCLIP6.43□□□□□ -1.38
SKP1-202ENST00000353411 GOLGA6L6A8MZA4 724 aa6.42□□□□□ -1.38
SKP1-202ENST00000353411 ZNF771Q7L3S4 317 aaPredicted RBP6.42□□□□□ -1.38
SKP1-202ENST00000353411 CCDC66A2RUB6 948 aa6.42□□□□□ -1.38
SKP1-202ENST00000353411 BRPF3Q9ULD4 1205 aa6.42□□□□□ -1.38
SKP1-202ENST00000353411 CECR2Q9BXF3 1484 aa6.42□□□□□ -1.38
SKP1-202ENST00000353411 FAM13BQ9NYF5 915 aa6.42□□□□□ -1.38
SKP1-202ENST00000353411 TAF7LQ5H9L4 462 aa6.41□□□□□ -1.38
SKP1-202ENST00000353411 PDCL3Q9H2J4 239 aa6.41□□□□□ -1.38
SKP1-202ENST00000353411 GOLGA6L1Q8N7Z2 621 aa6.41□□□□□ -1.38
SKP1-202ENST00000353411 NRDCO43847 1150 aa6.41□□□□□ -1.38
SKP1-202ENST00000353411 CCDC9Q9Y3X0 531 aaKnown RBP6.41□□□□□ -1.38
SKP1-202ENST00000353411 HSP90AB1P08238 724 aaKnown RBP6.41□□□□□ -1.38
SKP1-202ENST00000353411 SKOR2Q2VWA4 1001 aaPredicted RBP6.41□□□□□ -1.38
SKP1-202ENST00000353411 GZF1Q9H116 711 aaPredicted RBP6.4□□□□□ -1.38
SKP1-202ENST00000353411 NFKBIBQ15653 356 aa6.4□□□□□ -1.39
SKP1-202ENST00000353411 FRAT1Q92837 279 aaPredicted RBP6.39□□□□□ -1.39
SKP1-202ENST00000353411 PDE4AP27815 886 aa6.39□□□□□ -1.39
SKP1-202ENST00000353411 ABCC8Q09428 1581 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms