RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 CUX1P39880 1505 aa14.82□□□□□ -0.04
CD44-205ENST00000352818 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
CD44-205ENST00000352818 PRG4Q92954 1404 aaPredicted RBP14.79□□□□□ -0.04
CD44-205ENST00000352818 COL17A1Q9UMD9 1497 aaPredicted RBP14.78□□□□□ -0.04
CD44-205ENST00000352818 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
CD44-205ENST00000352818 TSPOAP1O95153 1857 aa14.76□□□□□ -0.05
CD44-205ENST00000352818 ADCY10Q96PN6 1610 aa14.74□□□□□ -0.05
CD44-205ENST00000352818 NPM1P06748 294 aaKnown RBP eCLIP14.73□□□□□ -0.05
CD44-205ENST00000352818 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.05
CD44-205ENST00000352818 ADAMTS12P58397 1594 aa14.71□□□□□ -0.05
CD44-205ENST00000352818 JPH4Q96JJ6 628 aa14.7□□□□□ -0.06
CD44-205ENST00000352818 PPRC1Q5VV67 1664 aaKnown RBP14.68□□□□□ -0.06
CD44-205ENST00000352818 DISP3Q9P2K9 1392 aa14.68□□□□□ -0.06
CD44-205ENST00000352818 FHAD1B1AJZ9 1412 aa14.64□□□□□ -0.07
CD44-205ENST00000352818 GLI2P10070 1586 aa14.56□□□□□ -0.08
CD44-205ENST00000352818 TOP2BQ02880 1626 aa14.54□□□□□ -0.08
CD44-205ENST00000352818 RUSC2Q8N2Y8 1516 aa14.53□□□□□ -0.08
CD44-205ENST00000352818 ASXL2Q76L83 1435 aa14.53□□□□□ -0.08
CD44-205ENST00000352818 CERKQ8TCT0 537 aa14.48□□□□□ -0.09
CD44-205ENST00000352818 PLB1Q6P1J6 1458 aa14.48□□□□□ -0.09
CD44-205ENST00000352818 ERICH3Q5RHP9 1530 aa14.46□□□□□ -0.09
CD44-205ENST00000352818 ABCC2Q92887 1545 aa14.46□□□□□ -0.09
CD44-205ENST00000352818 PTPRMP28827 1452 aa14.45□□□□□ -0.1
CD44-205ENST00000352818 WRNQ14191 1432 aaPredicted RBP eCLIP14.44□□□□□ -0.1
CD44-205ENST00000352818 EPRSP07814 1512 aaKnown RBP14.44□□□□□ -0.1
CD44-205ENST00000352818 MAP3K4Q9Y6R4 1608 aa14.44□□□□□ -0.1
CD44-205ENST00000352818 SPATA31D1Q6ZQQ2 1576 aa14.43□□□□□ -0.1
CD44-205ENST00000352818 PCF11O94913 1555 aaKnown RBP14.43□□□□□ -0.1
CD44-205ENST00000352818 PTPRGP23470 1445 aa14.41□□□□□ -0.1
CD44-205ENST00000352818 TEX14Q8IWB6 1497 aa14.4□□□□□ -0.1
CD44-205ENST00000352818 KIF21BO75037 1637 aa14.37□□□□□ -0.11
CD44-205ENST00000352818 HSPA2P54652 639 aa14.37□□□□□ -0.11
CD44-205ENST00000352818 KIAA0586Q9BVV6 1533 aa14.36□□□□□ -0.11
CD44-205ENST00000352818 ADAMTSL3P82987 1691 aa14.36□□□□□ -0.11
CD44-205ENST00000352818 TTBK1Q5TCY1 1321 aaPredicted RBP14.35□□□□□ -0.11
CD44-205ENST00000352818 UHRF1BP1LA0JNW5 1464 aa14.34□□□□□ -0.11
CD44-205ENST00000352818 CUL7Q14999 1698 aa14.31□□□□□ -0.12
CD44-205ENST00000352818 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
CD44-205ENST00000352818 KDM5BQ9UGL1 1544 aa14.3□□□□□ -0.12
CD44-205ENST00000352818 UACAQ9BZF9 1416 aa14.27□□□□□ -0.12
CD44-205ENST00000352818 MAGI3Q5TCQ9 1506 aa14.26□□□□□ -0.13
CD44-205ENST00000352818 MADDQ8WXG6 1647 aa14.23□□□□□ -0.13
CD44-205ENST00000352818 BIVM-ERCC5R4GMW8 1640 aa14.23□□□□□ -0.13
CD44-205ENST00000352818 CD109Q6YHK3 1445 aa14.22□□□□□ -0.13
CD44-205ENST00000352818 WDR7Q9Y4E6 1490 aa14.2□□□□□ -0.14
CD44-205ENST00000352818 ZCCHC11Q5TAX3 1644 aaKnown RBP14.19□□□□□ -0.14
CD44-205ENST00000352818 ARAP3Q8WWN8 1544 aa14.18□□□□□ -0.14
CD44-205ENST00000352818 BCORL1Q5H9F3 1711 aa14.18□□□□□ -0.14
CD44-205ENST00000352818 CARMIL2Q6F5E8 1435 aa14.17□□□□□ -0.14
CD44-205ENST00000352818 SUPT5HO00267 1087 aaKnown RBP14.17□□□□□ -0.14
CD44-205ENST00000352818 IGF1RP08069 1367 aa14.17□□□□□ -0.14
CD44-205ENST00000352818 DISP1Q96F81 1524 aa14.15□□□□□ -0.14
CD44-205ENST00000352818 RAPGEF3O95398 923 aa14.12□□□□□ -0.15
CD44-205ENST00000352818 CFAP43Q8NDM7 1665 aa14.1□□□□□ -0.15
CD44-205ENST00000352818 KCNH8Q96L42 1107 aa14.1□□□□□ -0.15
CD44-205ENST00000352818 RIMS1Q86UR5 1692 aaKnown RBP14.1□□□□□ -0.15
CD44-205ENST00000352818 PLPPR3Q6T4P5 718 aa14.09□□□□□ -0.15
CD44-205ENST00000352818 ARID4BQ4LE39 1312 aaPredicted RBP14.08□□□□□ -0.16
CD44-205ENST00000352818 YEATS2Q9ULM3 1422 aa14.06□□□□□ -0.16
CD44-205ENST00000352818 FRMPD1Q5SYB0 1578 aa14.05□□□□□ -0.16
CD44-205ENST00000352818 LTBP4Q8N2S1 1624 aa14.04□□□□□ -0.16
CD44-205ENST00000352818 IQGAP2Q13576 1575 aa14.03□□□□□ -0.16
CD44-205ENST00000352818 STRCQ7RTU9 1775 aa14.03□□□□□ -0.16
CD44-205ENST00000352818 CARMIL1Q5VZK9 1371 aa13.98□□□□□ -0.17
CD44-205ENST00000352818 DMRT2Q9Y5R5 561 aa13.98□□□□□ -0.17
CD44-205ENST00000352818 SIGLEC1Q9BZZ2 1709 aa13.98□□□□□ -0.17
CD44-205ENST00000352818 PHLDB1Q86UU1 1377 aa13.97□□□□□ -0.17
CD44-205ENST00000352818 UGGT2Q9NYU1 1516 aa13.97□□□□□ -0.17
CD44-205ENST00000352818 IQSEC2Q5JU85 1478 aa13.97□□□□□ -0.17
CD44-205ENST00000352818 ARHGEF40Q8TER5 1519 aa13.96□□□□□ -0.17
CD44-205ENST00000352818 KIAA0556O60303 1618 aa13.95□□□□□ -0.18
CD44-205ENST00000352818 PTPRTO14522 1441 aa13.95□□□□□ -0.18
CD44-205ENST00000352818 MED1Q15648 1581 aaPredicted RBP13.94□□□□□ -0.18
CD44-205ENST00000352818 KIF27Q86VH2 1401 aa13.93□□□□□ -0.18
CD44-205ENST00000352818 ABCA8O94911 1581 aa13.92□□□□□ -0.18
CD44-205ENST00000352818 TTC37Q6PGP7 1564 aa13.92□□□□□ -0.18
CD44-205ENST00000352818 CEBPAP49715 358 aaPredicted RBP13.92□□□□□ -0.18
CD44-205ENST00000352818 NEO1Q92859 1461 aa13.92□□□□□ -0.18
CD44-205ENST00000352818 MLECQ14165 292 aa13.89□□□□□ -0.19
CD44-205ENST00000352818 PREX1Q8TCU6 1659 aa13.88□□□□□ -0.19
CD44-205ENST00000352818 UBAP1LF5GYI3 381 aa13.88□□□□□ -0.19
CD44-205ENST00000352818 ABCA9Q8IUA7 1624 aa13.88□□□□□ -0.19
CD44-205ENST00000352818 POGZQ7Z3K3 1410 aa13.87□□□□□ -0.19
CD44-205ENST00000352818 FANCAO15360 1455 aa13.87□□□□□ -0.19
CD44-205ENST00000352818 HSPA1LP34931 641 aa13.86□□□□□ -0.19
CD44-205ENST00000352818 FHOD3Q2V2M9 1422 aa13.85□□□□□ -0.19
CD44-205ENST00000352818 ARHGEF12Q9NZN5 1544 aa13.85□□□□□ -0.19
CD44-205ENST00000352818 AKNAQ7Z591 1439 aa13.84□□□□□ -0.19
CD44-205ENST00000352818 ARID3CA6NKF2 412 aa13.84□□□□□ -0.19
CD44-205ENST00000352818 ATP10BO94823 1461 aa13.84□□□□□ -0.19
CD44-205ENST00000352818 UHRF1BP1Q6BDS2 1440 aa13.82□□□□□ -0.2
CD44-205ENST00000352818 DENND4BO75064 1496 aaPredicted RBP13.82□□□□□ -0.2
CD44-205ENST00000352818 FER1L4A9Z1Z3 1794 aa13.82□□□□□ -0.2
CD44-205ENST00000352818 RICTORQ6R327 1708 aa13.81□□□□□ -0.2
CD44-205ENST00000352818 ZNF335Q9H4Z2 1342 aaPredicted RBP13.8□□□□□ -0.2
CD44-205ENST00000352818 NCOA1Q15788 1441 aa13.79□□□□□ -0.2
CD44-205ENST00000352818 ZMYM4Q5VZL5 1548 aa13.79□□□□□ -0.2
CD44-205ENST00000352818 ZFYVE16Q7Z3T8 1539 aa13.78□□□□□ -0.2
CD44-205ENST00000352818 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
CD44-205ENST00000352818 SRCAPQ6ZRS2 3230 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms