RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 HIRIP3Q9BW71 556 aaPredicted RBP20.2■□□□□ 0.82
NUP50-201ENST00000347635 NCAPD3P42695 1498 aa20.19■□□□□ 0.82
NUP50-201ENST00000347635 ESF1Q9H501 851 aaKnown RBP20.19■□□□□ 0.82
NUP50-201ENST00000347635 CCNB3Q8WWL7 1395 aa20.17■□□□□ 0.82
NUP50-201ENST00000347635 FHAD1B1AJZ9 1412 aa20.15■□□□□ 0.82
NUP50-201ENST00000347635 SLC4A1APQ9BWU0 796 aaKnown RBP20.14■□□□□ 0.81
NUP50-201ENST00000347635 FAM9BQ8IZU0 186 aa20.13■□□□□ 0.81
NUP50-201ENST00000347635 ANP32AP39687 249 aaKnown RBP20.12■□□□□ 0.81
NUP50-201ENST00000347635 EIF4G1Q04637 1599 aaKnown RBP20.12■□□□□ 0.81
NUP50-201ENST00000347635 ANP32EQ9BTT0 268 aa20.1■□□□□ 0.81
NUP50-201ENST00000347635 CHIC2Q9UKJ5 165 aa20.09■□□□□ 0.81
NUP50-201ENST00000347635 RUSC2Q8N2Y8 1516 aa20.06■□□□□ 0.8
NUP50-201ENST00000347635 SIN3AQ96ST3 1273 aa20.05■□□□□ 0.8
NUP50-201ENST00000347635 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
NUP50-201ENST00000347635 KANK4Q5T7N3 995 aaPredicted RBP20.05■□□□□ 0.8
NUP50-201ENST00000347635 IRX6P78412 446 aaPredicted RBP20.03■□□□□ 0.8
NUP50-201ENST00000347635 MRS2Q9HD23 443 aa20.02■□□□□ 0.8
NUP50-201ENST00000347635 CARMIL2Q6F5E8 1435 aa20.01■□□□□ 0.79
NUP50-201ENST00000347635 EIF4G2P78344 907 aaKnown RBP eCLIP20.01■□□□□ 0.79
NUP50-201ENST00000347635 TDRD9Q8NDG6 1382 aaKnown RBP20■□□□□ 0.79
NUP50-201ENST00000347635 RAPGEF2Q9Y4G8 1499 aa19.98■□□□□ 0.79
NUP50-201ENST00000347635 SETD5Q9C0A6 1442 aa19.97■□□□□ 0.79
NUP50-201ENST00000347635 KCNH8Q96L42 1107 aa19.97■□□□□ 0.79
NUP50-201ENST00000347635 CFDP1Q9UEE9 299 aaPredicted RBP19.96■□□□□ 0.79
NUP50-201ENST00000347635 TIMELESSQ9UNS1 1208 aa19.96■□□□□ 0.79
NUP50-201ENST00000347635 RRP7BPQ9NSQ0 103 aa19.95■□□□□ 0.78
NUP50-201ENST00000347635 STAG3Q9UJ98 1225 aa19.93■□□□□ 0.78
NUP50-201ENST00000347635 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
NUP50-201ENST00000347635 CCDC136Q96JN2 1154 aa19.92■□□□□ 0.78
NUP50-201ENST00000347635 RAB3GAP2Q9H2M9 1393 aa19.92■□□□□ 0.78
NUP50-201ENST00000347635 DHX57Q6P158 1386 aaKnown RBP19.91■□□□□ 0.78
NUP50-201ENST00000347635 CCER2I3L3R5 266 aa19.9■□□□□ 0.78
NUP50-201ENST00000347635 HMGXB3Q12766 1538 aa19.9■□□□□ 0.78
NUP50-201ENST00000347635 FMN1Q68DA7 1419 aa19.89■□□□□ 0.77
NUP50-201ENST00000347635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.88■□□□□ 0.772e-6■■■□□ 16.3
NUP50-201ENST00000347635 TMC1Q8TDI8 760 aa19.87■□□□□ 0.77
NUP50-201ENST00000347635 CHGAP10645 457 aaKnown RBP19.85■□□□□ 0.77
NUP50-201ENST00000347635 ARHGAP35Q9NRY4 1499 aa19.83■□□□□ 0.76
NUP50-201ENST00000347635 NBR1Q14596 966 aa19.81■□□□□ 0.76
NUP50-201ENST00000347635 ZBTB47Q9UFB7 747 aaPredicted RBP19.81■□□□□ 0.76
NUP50-201ENST00000347635 TSHZ2Q9NRE2 1034 aa19.8■□□□□ 0.76
NUP50-201ENST00000347635 CC2D2AQ9P2K1 1620 aa19.78■□□□□ 0.76
NUP50-201ENST00000347635 CFTRP13569 1480 aa19.78■□□□□ 0.76
NUP50-201ENST00000347635 PPP4R2Q9NY27 417 aa19.77■□□□□ 0.76
NUP50-201ENST00000347635 CANXP27824 592 aaKnown RBP19.76■□□□□ 0.75
NUP50-201ENST00000347635 BICRAQ9NZM4 1560 aa19.76■□□□□ 0.75
NUP50-201ENST00000347635 SALL2Q9Y467 1007 aaPredicted RBP19.75■□□□□ 0.75
NUP50-201ENST00000347635 RBM19Q9Y4C8 960 aaKnown RBP19.74■□□□□ 0.75
NUP50-201ENST00000347635 FGD5Q6ZNL6 1462 aa19.74■□□□□ 0.75
NUP50-201ENST00000347635 KIF21BO75037 1637 aa19.74■□□□□ 0.75
NUP50-201ENST00000347635 NEFMP07197 916 aa19.71■□□□□ 0.75
NUP50-201ENST00000347635 KDM2AQ9Y2K7 1162 aa19.69■□□□□ 0.74
NUP50-201ENST00000347635 GAPVD1Q14C86 1478 aa19.69■□□□□ 0.74
NUP50-201ENST00000347635 PPP1R15AO75807 674 aaPredicted RBP19.69■□□□□ 0.74
NUP50-201ENST00000347635 JPH4Q96JJ6 628 aa19.67■□□□□ 0.74
NUP50-201ENST00000347635 HSPA5P11021 654 aaKnown RBP19.65■□□□□ 0.74
NUP50-201ENST00000347635 IGF1RP08069 1367 aa19.62■□□□□ 0.73
NUP50-201ENST00000347635 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
NUP50-201ENST00000347635 B4GALNT3Q6L9W6 998 aa19.59■□□□□ 0.73
NUP50-201ENST00000347635 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
NUP50-201ENST00000347635 EFCAB2Q5VUJ9 269 aa19.58■□□□□ 0.73
NUP50-201ENST00000347635 ERICH6BQ5W0A0 696 aa19.58■□□□□ 0.73
NUP50-201ENST00000347635 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.58■□□□□ 0.73
NUP50-201ENST00000347635 KANK1Q14678 1352 aa19.57■□□□□ 0.72
NUP50-201ENST00000347635 WDR43Q15061 677 aaKnown RBP eCLIP19.56■□□□□ 0.72
NUP50-201ENST00000347635 RAD54L2Q9Y4B4 1467 aa19.56■□□□□ 0.72
NUP50-201ENST00000347635 ARID4BQ4LE39 1312 aaPredicted RBP19.56■□□□□ 0.72
NUP50-201ENST00000347635 FHOD3Q2V2M9 1422 aa19.56■□□□□ 0.72
NUP50-201ENST00000347635 NOP58Q9Y2X3 529 aaKnown RBP19.56■□□□□ 0.72
NUP50-201ENST00000347635 PLPPR3Q6T4P5 718 aa19.55■□□□□ 0.72
NUP50-201ENST00000347635 CCDC18Q5T9S5 1454 aa19.55■□□□□ 0.72
NUP50-201ENST00000347635 RSPH4AQ5TD94 716 aa19.55■□□□□ 0.72
NUP50-201ENST00000347635 SENP3-EIF4A1A0A087X0R7 540 aa19.54■□□□□ 0.72
NUP50-201ENST00000347635 CARD11Q9BXL7 1154 aa19.54■□□□□ 0.72
NUP50-201ENST00000347635 OSCARQ8IYS5 282 aa19.53■□□□□ 0.72
NUP50-201ENST00000347635 GRIN2BQ13224 1484 aa19.53■□□□□ 0.72
NUP50-201ENST00000347635 IFT140Q96RY7 1462 aa19.52■□□□□ 0.72
NUP50-201ENST00000347635 ERICH3Q5RHP9 1530 aa19.52■□□□□ 0.72
NUP50-201ENST00000347635 BCL11AQ9H165 835 aa19.51■□□□□ 0.71
NUP50-201ENST00000347635 PEG3Q9GZU2 1588 aa19.51■□□□□ 0.71
NUP50-201ENST00000347635 PTPRGP23470 1445 aa19.5■□□□□ 0.71
NUP50-201ENST00000347635 RRBP1Q9P2E9 1410 aaKnown RBP19.5■□□□□ 0.71
NUP50-201ENST00000347635 DDRGK1Q96HY6 314 aa19.49■□□□□ 0.71
NUP50-201ENST00000347635 LAMC3Q9Y6N6 1575 aa19.48■□□□□ 0.71
NUP50-201ENST00000347635 CDCA8Q53HL2 280 aa19.47■□□□□ 0.71
NUP50-201ENST00000347635 UPF2Q9HAU5 1272 aaKnown RBP19.47■□□□□ 0.71
NUP50-201ENST00000347635 NESP48681 1621 aa19.46■□□□□ 0.71
NUP50-201ENST00000347635 MPHOSPH9Q99550 1183 aa19.46■□□□□ 0.71
NUP50-201ENST00000347635 ARAP1Q96P48 1450 aa19.45■□□□□ 0.7
NUP50-201ENST00000347635 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
NUP50-201ENST00000347635 ANKRD30AQ9BXX3 1397 aa19.45■□□□□ 0.7
NUP50-201ENST00000347635 TOP2BQ02880 1626 aa19.45■□□□□ 0.7
NUP50-201ENST00000347635 FOXD1Q16676 465 aa19.44■□□□□ 0.7
NUP50-201ENST00000347635 AQRO60306 1485 aaKnown RBP eCLIP19.43■□□□□ 0.76e-6■□□□□ 8.5
NUP50-201ENST00000347635 SLC24A1O60721 1099 aa19.43■□□□□ 0.7
NUP50-201ENST00000347635 TRHP20396 242 aaPredicted RBP19.43■□□□□ 0.7
NUP50-201ENST00000347635 DNMBPQ6XZF7 1577 aa19.42■□□□□ 0.7
NUP50-201ENST00000347635 RGL3Q3MIN7 710 aa19.41■□□□□ 0.7
NUP50-201ENST00000347635 UNC13AQ9UPW8 1703 aa19.4■□□□□ 0.7
NUP50-201ENST00000347635 HDGFP51858 240 aaKnown RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms