RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 NISCHQ9Y2I1 1504 aa26.95■■□□□ 1.9
NUP50-201ENST00000347635 DCAF8L2P0C7V8 631 aa25.71■■□□□ 1.71
NUP50-201ENST00000347635 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
NUP50-201ENST00000347635 SHROOM4Q9ULL8 1493 aa24.52■■□□□ 1.52
NUP50-201ENST00000347635 PCGF6Q9BYE7 350 aa23.52■■□□□ 1.36
NUP50-201ENST00000347635 EHMT2Q96KQ7 1210 aa23.24■■□□□ 1.31
NUP50-201ENST00000347635 HRCP23327 699 aa23.05■■□□□ 1.28
NUP50-201ENST00000347635 FAM9AQ8IZU1 332 aaPredicted RBP23.02■■□□□ 1.28
NUP50-201ENST00000347635 ZEB1P37275 1124 aaPredicted RBP22.98■■□□□ 1.27
NUP50-201ENST00000347635 ABCC9O60706 1549 aa22.95■■□□□ 1.26
NUP50-201ENST00000347635 CHIC1Q5VXU3 224 aa22.94■■□□□ 1.26
NUP50-201ENST00000347635 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
NUP50-201ENST00000347635 CCDC180Q9P1Z9 1646 aa22.77■■□□□ 1.24
NUP50-201ENST00000347635 TRIM26Q12899 539 aaPredicted RBP22.75■■□□□ 1.23
NUP50-201ENST00000347635 APLP2Q06481 763 aa22.65■■□□□ 1.22
NUP50-201ENST00000347635 LOC105371045A0A1W2PR82 267 aa22.61■■□□□ 1.21
NUP50-201ENST00000347635 TTBK1Q5TCY1 1321 aaPredicted RBP22.57■■□□□ 1.2
NUP50-201ENST00000347635 PELP1Q8IZL8 1130 aaKnown RBP22.56■■□□□ 1.2
NUP50-201ENST00000347635 CCER1Q8TC90 406 aaPredicted RBP22.56■■□□□ 1.2
NUP50-201ENST00000347635 PPARGC1BQ86YN6 1023 aaKnown RBP22.51■■□□□ 1.19
NUP50-201ENST00000347635 CENPBP07199 599 aaPredicted RBP22.5■■□□□ 1.19
NUP50-201ENST00000347635 ZCCHC6Q5VYS8 1495 aaKnown RBP22.38■■□□□ 1.17
NUP50-201ENST00000347635 PABPN1Q86U42 306 aaKnown RBP eCLIP22.32■■□□□ 1.16
NUP50-201ENST00000347635 UBTFP17480 764 aaKnown RBP22.2■■□□□ 1.14
NUP50-201ENST00000347635 RANGAP1P46060 587 aaPredicted RBP22.06■■□□□ 1.12
NUP50-201ENST00000347635 YTHDC1Q96MU7 727 aaKnown RBP22.01■■□□□ 1.11
NUP50-201ENST00000347635 RB1CC1Q8TDY2 1594 aa22.01■■□□□ 1.11
NUP50-201ENST00000347635 DCAF1Q9Y4B6 1507 aa22.01■■□□□ 1.11
NUP50-201ENST00000347635 SCRIBQ14160 1630 aa21.95■■□□□ 1.1
NUP50-201ENST00000347635 MYT1Q01538 1121 aa21.93■■□□□ 1.1
NUP50-201ENST00000347635 NACADO15069 1562 aa21.93■■□□□ 1.1
NUP50-201ENST00000347635 MYO15BQ96JP2 1530 aa21.93■■□□□ 1.1
NUP50-201ENST00000347635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.89■■□□□ 1.09
NUP50-201ENST00000347635 ATP1B4Q9UN42 357 aaPredicted RBP21.89■■□□□ 1.09
NUP50-201ENST00000347635 DIEXFQ68CQ4 756 aaKnown RBP21.78■■□□□ 1.08
NUP50-201ENST00000347635 HNRNPUL2Q1KMD3 747 aaKnown RBP21.67■■□□□ 1.06
NUP50-201ENST00000347635 NEFLP07196 543 aa21.51■■□□□ 1.03
NUP50-201ENST00000347635 GTF3C3Q9Y5Q9 886 aa21.5■■□□□ 1.03
NUP50-201ENST00000347635 ACIN1Q9UKV3 1341 aaKnown RBP21.45■■□□□ 1.03
NUP50-201ENST00000347635 ERICH6Q7L0X2 663 aa21.43■■□□□ 1.02
NUP50-201ENST00000347635 ITGAEP38570 1179 aa21.38■■□□□ 1.01
NUP50-201ENST00000347635 ZNF316A6NFI3 1004 aaPredicted RBP21.38■■□□□ 1.01
NUP50-201ENST00000347635 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
NUP50-201ENST00000347635 CSRNP3Q8WYN3 585 aa21.27■□□□□ 0.99
NUP50-201ENST00000347635 SCAF1Q9H7N4 1312 aaKnown RBP21.22■□□□□ 0.99
NUP50-201ENST00000347635 BAZ1AQ9NRL2 1556 aaPredicted RBP21.19■□□□□ 0.98
NUP50-201ENST00000347635 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
NUP50-201ENST00000347635 NEUROD1Q13562 356 aa21.11■□□□□ 0.97
NUP50-201ENST00000347635 MYT1LQ9UL68 1186 aa21.11■□□□□ 0.97
NUP50-201ENST00000347635 FBLN2P98095 1184 aa21.09■□□□□ 0.97
NUP50-201ENST00000347635 FAM50AQ14320 339 aaKnown RBP20.98■□□□□ 0.95
NUP50-201ENST00000347635 CEP162Q5TB80 1403 aa20.91■□□□□ 0.94
NUP50-201ENST00000347635 CECR2Q9BXF3 1484 aa20.89■□□□□ 0.94
NUP50-201ENST00000347635 EEA1Q15075 1411 aa20.86■□□□□ 0.93
NUP50-201ENST00000347635 CLSPNQ9HAW4 1339 aa20.85■□□□□ 0.93
NUP50-201ENST00000347635 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
NUP50-201ENST00000347635 BCANQ96GW7 911 aa20.84■□□□□ 0.93
NUP50-201ENST00000347635 CDK11AQ9UQ88 783 aaPredicted RBP20.83■□□□□ 0.93
NUP50-201ENST00000347635 GOLGA3Q08378 1498 aa20.8■□□□□ 0.92
NUP50-201ENST00000347635 ANP32CO43423 234 aa20.79■□□□□ 0.92
NUP50-201ENST00000347635 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
NUP50-201ENST00000347635 TNIKQ9UKE5 1360 aa20.78■□□□□ 0.92
NUP50-201ENST00000347635 MIER1Q8N108 512 aa20.78■□□□□ 0.92
NUP50-201ENST00000347635 CLIP1P30622 1438 aa20.77■□□□□ 0.91
NUP50-201ENST00000347635 POLR3GLQ9BT43 218 aa20.72■□□□□ 0.91
NUP50-201ENST00000347635 P3H3Q8IVL6 736 aa20.72■□□□□ 0.91
NUP50-201ENST00000347635 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
NUP50-201ENST00000347635 CHMP7Q8WUX9 453 aaPredicted RBP20.65■□□□□ 0.9
NUP50-201ENST00000347635 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
NUP50-201ENST00000347635 TRIM52Q96A61 297 aa20.63■□□□□ 0.89
NUP50-201ENST00000347635 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
NUP50-201ENST00000347635 CNGB1Q14028 1251 aaPredicted RBP20.6■□□□□ 0.89
NUP50-201ENST00000347635 CEP164Q9UPV0 1460 aa20.59■□□□□ 0.89
NUP50-201ENST00000347635 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.89
NUP50-201ENST00000347635 TOP2AP11388 1531 aaKnown RBP20.55■□□□□ 0.88
NUP50-201ENST00000347635 CCDC88BA6NC98 1476 aa20.54■□□□□ 0.88
NUP50-201ENST00000347635 SOGA1O94964 1423 aa20.53■□□□□ 0.88
NUP50-201ENST00000347635 FKBP8Q14318 412 aa20.53■□□□□ 0.88
NUP50-201ENST00000347635 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
NUP50-201ENST00000347635 DDX10Q13206 875 aaKnown RBP20.49■□□□□ 0.87
NUP50-201ENST00000347635 ABCC8Q09428 1581 aa20.48■□□□□ 0.87
NUP50-201ENST00000347635 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
NUP50-201ENST00000347635 ATAD2BQ9ULI0 1458 aa20.47■□□□□ 0.87
NUP50-201ENST00000347635 ARID3CA6NKF2 412 aa20.46■□□□□ 0.87
NUP50-201ENST00000347635 WIZO95785 1651 aa20.45■□□□□ 0.86
NUP50-201ENST00000347635 TONSLQ96HA7 1378 aa20.44■□□□□ 0.86
NUP50-201ENST00000347635 DAXXQ9UER7 740 aaPredicted RBP20.44■□□□□ 0.86
NUP50-201ENST00000347635 RTL5Q5HYW3 569 aaPredicted RBP20.4■□□□□ 0.86
NUP50-201ENST00000347635 ZNF777Q9ULD5 760 aaPredicted RBP20.4■□□□□ 0.86
NUP50-201ENST00000347635 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
NUP50-201ENST00000347635 MTUS2Q5JR59 1369 aa20.34■□□□□ 0.85
NUP50-201ENST00000347635 VPS8Q8N3P4 1428 aa20.31■□□□□ 0.84
NUP50-201ENST00000347635 CUX2O14529 1486 aa20.3■□□□□ 0.84
NUP50-201ENST00000347635 HNRNPUQ00839 825 aaKnown RBP eCLIP20.3■□□□□ 0.84
NUP50-201ENST00000347635 ZNF326Q5BKZ1 582 aaKnown RBP20.3■□□□□ 0.84
NUP50-201ENST00000347635 CARMIL1Q5VZK9 1371 aa20.26■□□□□ 0.83
NUP50-201ENST00000347635 PLEKHD1A6NEE1 506 aa20.22■□□□□ 0.83
NUP50-201ENST00000347635 SUPT16HQ9Y5B9 1047 aaKnown RBP20.22■□□□□ 0.83
NUP50-201ENST00000347635 TSPY4P0CV99 314 aa20.2■□□□□ 0.83
NUP50-201ENST00000347635 TSPY10P0CW01 314 aa20.2■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms