RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 GOLGA3Q08378 1498 aa14.66□□□□□ -0.06
ATG4A-202ENST00000345734 LAMC3Q9Y6N6 1575 aa14.65□□□□□ -0.06
ATG4A-202ENST00000345734 KIF21BO75037 1637 aa14.65□□□□□ -0.06
ATG4A-202ENST00000345734 TNIKQ9UKE5 1360 aa14.64□□□□□ -0.07
ATG4A-202ENST00000345734 UBTFP17480 764 aaKnown RBP14.64□□□□□ -0.07
ATG4A-202ENST00000345734 CEP164Q9UPV0 1460 aa14.64□□□□□ -0.07
ATG4A-202ENST00000345734 PCGF6Q9BYE7 350 aa14.63□□□□□ -0.07
ATG4A-202ENST00000345734 CEP162Q5TB80 1403 aa14.61□□□□□ -0.07
ATG4A-202ENST00000345734 FGD5Q6ZNL6 1462 aa14.61□□□□□ -0.07
ATG4A-202ENST00000345734 RAPGEF2Q9Y4G8 1499 aa14.59□□□□□ -0.07
ATG4A-202ENST00000345734 KIF27Q86VH2 1401 aa14.59□□□□□ -0.07
ATG4A-202ENST00000345734 PROM2Q8N271 834 aa14.59□□□□□ -0.07
ATG4A-202ENST00000345734 VASPP50552 380 aaPredicted RBP14.58□□□□□ -0.08
ATG4A-202ENST00000345734 DNMBPQ6XZF7 1577 aa14.58□□□□□ -0.08
ATG4A-202ENST00000345734 TOPBP1Q92547 1522 aa14.56□□□□□ -0.08
ATG4A-202ENST00000345734 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
ATG4A-202ENST00000345734 CUX2O14529 1486 aa14.54□□□□□ -0.08
ATG4A-202ENST00000345734 PDS5BQ9NTI5 1447 aa14.54□□□□□ -0.08
ATG4A-202ENST00000345734 PRXQ9BXM0 1461 aa14.54□□□□□ -0.08
ATG4A-202ENST00000345734 URB2Q14146 1524 aaKnown RBP14.53□□□□□ -0.08
ATG4A-202ENST00000345734 C1QBPQ07021 282 aaKnown RBP14.52□□□□□ -0.09
ATG4A-202ENST00000345734 TRIM26Q12899 539 aaPredicted RBP14.51□□□□□ -0.09
ATG4A-202ENST00000345734 POLA1P09884 1462 aaPredicted RBP14.51□□□□□ -0.09
ATG4A-202ENST00000345734 RAD54L2Q9Y4B4 1467 aa14.51□□□□□ -0.09
ATG4A-202ENST00000345734 ERICH3Q5RHP9 1530 aa14.5□□□□□ -0.09
ATG4A-202ENST00000345734 IFNLR1Q8IU57 520 aaPredicted RBP14.5□□□□□ -0.09
ATG4A-202ENST00000345734 PPARGC1BQ86YN6 1023 aaKnown RBP14.48□□□□□ -0.09
ATG4A-202ENST00000345734 IGF1RP08069 1367 aa14.47□□□□□ -0.09
ATG4A-202ENST00000345734 POTEDQ86YR6 584 aa14.45□□□□□ -0.1
ATG4A-202ENST00000345734 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
ATG4A-202ENST00000345734 CLIP1P30622 1438 aa14.45□□□□□ -0.1
ATG4A-202ENST00000345734 ABCA10Q8WWZ4 1543 aa14.45□□□□□ -0.1
ATG4A-202ENST00000345734 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
ATG4A-202ENST00000345734 WDR97A6NE52 1622 aa14.41□□□□□ -0.1
ATG4A-202ENST00000345734 CARMIL1Q5VZK9 1371 aa14.4□□□□□ -0.1
ATG4A-202ENST00000345734 MRC2Q9UBG0 1479 aa14.36□□□□□ -0.11
ATG4A-202ENST00000345734 ZBTB12Q9Y330 459 aaPredicted RBP14.36□□□□□ -0.11
ATG4A-202ENST00000345734 TDRD9Q8NDG6 1382 aaKnown RBP14.34□□□□□ -0.11
ATG4A-202ENST00000345734 TTBK1Q5TCY1 1321 aaPredicted RBP14.34□□□□□ -0.11
ATG4A-202ENST00000345734 VPS8Q8N3P4 1428 aa14.33□□□□□ -0.11
ATG4A-202ENST00000345734 TARBP1Q13395 1621 aaKnown RBP14.33□□□□□ -0.12
ATG4A-202ENST00000345734 ABCA5Q8WWZ7 1642 aa14.33□□□□□ -0.12
ATG4A-202ENST00000345734 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
ATG4A-202ENST00000345734 DSG3P32926 999 aa14.32□□□□□ -0.12
ATG4A-202ENST00000345734 ARAP1Q96P48 1450 aa14.31□□□□□ -0.12
ATG4A-202ENST00000345734 CUL7Q14999 1698 aa14.3□□□□□ -0.12
ATG4A-202ENST00000345734 GAPVD1Q14C86 1478 aa14.3□□□□□ -0.12
ATG4A-202ENST00000345734 HRCP23327 699 aa14.29□□□□□ -0.12
ATG4A-202ENST00000345734 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
ATG4A-202ENST00000345734 WDR62O43379 1518 aa14.28□□□□□ -0.12
ATG4A-202ENST00000345734 ERCC6Q03468 1493 aa14.27□□□□□ -0.12
ATG4A-202ENST00000345734 MYT1Q01538 1121 aa14.27□□□□□ -0.13
ATG4A-202ENST00000345734 PKD2Q13563 968 aa14.27□□□□□ -0.13
ATG4A-202ENST00000345734 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.13
ATG4A-202ENST00000345734 PBRM1Q86U86 1689 aa14.23□□□□□ -0.13
ATG4A-202ENST00000345734 AQRO60306 1485 aaKnown RBP eCLIP14.23□□□□□ -0.131e-6■■■■■ 33.8
ATG4A-202ENST00000345734 THOC2Q8NI27 1593 aaKnown RBP14.22□□□□□ -0.13
ATG4A-202ENST00000345734 KLHL34Q8N239 644 aa14.21□□□□□ -0.13
ATG4A-202ENST00000345734 PLCB2Q00722 1185 aa14.21□□□□□ -0.13
ATG4A-202ENST00000345734 CTTNBP2Q8WZ74 1663 aa14.2□□□□□ -0.14
ATG4A-202ENST00000345734 IFT140Q96RY7 1462 aa14.2□□□□□ -0.14
ATG4A-202ENST00000345734 ZNF608Q9ULD9 1512 aaPredicted RBP14.19□□□□□ -0.14
ATG4A-202ENST00000345734 P3H3Q8IVL6 736 aa14.14□□□□□ -0.15
ATG4A-202ENST00000345734 GRIN2BQ13224 1484 aa14.14□□□□□ -0.15
ATG4A-202ENST00000345734 ADAMTS12P58397 1594 aa14.13□□□□□ -0.15
ATG4A-202ENST00000345734 FHAD1B1AJZ9 1412 aa14.12□□□□□ -0.15
ATG4A-202ENST00000345734 EIF4G3O43432 1585 aaKnown RBP14.11□□□□□ -0.15
ATG4A-202ENST00000345734 SPDYE2BA6NHP3 402 aa14.11□□□□□ -0.15
ATG4A-202ENST00000345734 SPDYE6P0CI01 402 aa14.11□□□□□ -0.15
ATG4A-202ENST00000345734 SPDYE2Q495Y8 402 aa14.11□□□□□ -0.15
ATG4A-202ENST00000345734 KANK4Q5T7N3 995 aaPredicted RBP14.11□□□□□ -0.15
ATG4A-202ENST00000345734 PLCD3Q8N3E9 789 aa14.11□□□□□ -0.15
ATG4A-202ENST00000345734 HAP1P54257 671 aaPredicted RBP14.11□□□□□ -0.15
ATG4A-202ENST00000345734 SSUH2Q9Y2M2 353 aa14.11□□□□□ -0.15
ATG4A-202ENST00000345734 FHOD3Q2V2M9 1422 aa14.1□□□□□ -0.15
ATG4A-202ENST00000345734 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
ATG4A-202ENST00000345734 SPOCK2Q92563 424 aa14.08□□□□□ -0.16
ATG4A-202ENST00000345734 SNAPC4Q5SXM2 1469 aa14.07□□□□□ -0.16
ATG4A-202ENST00000345734 PCF11O94913 1555 aaKnown RBP14.06□□□□□ -0.16
ATG4A-202ENST00000345734 MIER1Q8N108 512 aa14.05□□□□□ -0.16
ATG4A-202ENST00000345734 SAMD9Q5K651 1589 aa14.05□□□□□ -0.16
ATG4A-202ENST00000345734 ECM2O94769 699 aaPredicted RBP14.04□□□□□ -0.16
ATG4A-202ENST00000345734 TIAM1Q13009 1591 aa14.03□□□□□ -0.16
ATG4A-202ENST00000345734 STAG3Q9UJ98 1225 aa14.02□□□□□ -0.17
ATG4A-202ENST00000345734 IQGAP2Q13576 1575 aa14.01□□□□□ -0.17
ATG4A-202ENST00000345734 MAP3K1Q13233 1512 aa14.01□□□□□ -0.17
ATG4A-202ENST00000345734 ATP1B4Q9UN42 357 aaPredicted RBP14□□□□□ -0.17
ATG4A-202ENST00000345734 CASKIN1Q8WXD9 1431 aa13.99□□□□□ -0.17
ATG4A-202ENST00000345734 GRIN2AQ12879 1464 aa13.99□□□□□ -0.17
ATG4A-202ENST00000345734 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
ATG4A-202ENST00000345734 FYCO1Q9BQS8 1478 aa13.99□□□□□ -0.17
ATG4A-202ENST00000345734 CFAP43Q8NDM7 1665 aa13.98□□□□□ -0.17
ATG4A-202ENST00000345734 FMN1Q68DA7 1419 aa13.98□□□□□ -0.17
ATG4A-202ENST00000345734 LRRC9Q6ZRR7 1453 aa13.97□□□□□ -0.17
ATG4A-202ENST00000345734 ZEB1P37275 1124 aaPredicted RBP13.96□□□□□ -0.17
ATG4A-202ENST00000345734 SYNJ2O15056 1496 aa13.95□□□□□ -0.18
ATG4A-202ENST00000345734 RGL2O15211 777 aa13.94□□□□□ -0.18
ATG4A-202ENST00000345734 CHMP7Q8WUX9 453 aaPredicted RBP13.94□□□□□ -0.18
ATG4A-202ENST00000345734 LRRIQ1Q96JM4 1722 aa13.94□□□□□ -0.18
ATG4A-202ENST00000345734 NPM1P06748 294 aaKnown RBP eCLIP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms