RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 TRIM52Q96A61 297 aa28.86■■■□□ 2.21
RUNX3-202ENST00000338888 FANCD2Q9BXW9 1451 aa28.86■■■□□ 2.21
RUNX3-202ENST00000338888 RAB3GAP2Q9H2M9 1393 aa28.84■■■□□ 2.21
RUNX3-202ENST00000338888 MAPKBP1O60336 1514 aa28.82■■■□□ 2.2
RUNX3-202ENST00000338888 PRXQ9BXM0 1461 aa28.79■■■□□ 2.2
RUNX3-202ENST00000338888 MSH5O43196 834 aa28.79■■■□□ 2.2
RUNX3-202ENST00000338888 PPP1R15AO75807 674 aaPredicted RBP28.78■■■□□ 2.2
RUNX3-202ENST00000338888 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
RUNX3-202ENST00000338888 SIN3AQ96ST3 1273 aa28.76■■■□□ 2.2
RUNX3-202ENST00000338888 WDR97A6NE52 1622 aa28.75■■■□□ 2.19
RUNX3-202ENST00000338888 HIRIP3Q9BW71 556 aaPredicted RBP28.74■■■□□ 2.19
RUNX3-202ENST00000338888 KIF27Q86VH2 1401 aa28.74■■■□□ 2.19
RUNX3-202ENST00000338888 FGD5Q6ZNL6 1462 aa28.71■■■□□ 2.19
RUNX3-202ENST00000338888 CCER2I3L3R5 266 aa28.69■■■□□ 2.18
RUNX3-202ENST00000338888 ANP32CO43423 234 aa28.68■■■□□ 2.18
RUNX3-202ENST00000338888 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.17
RUNX3-202ENST00000338888 SETD5Q9C0A6 1442 aa28.63■■■□□ 2.17
RUNX3-202ENST00000338888 ARHGAP35Q9NRY4 1499 aa28.59■■■□□ 2.17
RUNX3-202ENST00000338888 TOPBP1Q92547 1522 aa28.56■■■□□ 2.16
RUNX3-202ENST00000338888 DNMBPQ6XZF7 1577 aa28.55■■■□□ 2.16
RUNX3-202ENST00000338888 RAD54L2Q9Y4B4 1467 aa28.54■■■□□ 2.16
RUNX3-202ENST00000338888 FANCIQ9NVI1 1328 aa28.53■■■□□ 2.16
RUNX3-202ENST00000338888 ERICH6Q7L0X2 663 aa28.53■■■□□ 2.16
RUNX3-202ENST00000338888 PDS5BQ9NTI5 1447 aa28.53■■■□□ 2.16
RUNX3-202ENST00000338888 IRX6P78412 446 aaPredicted RBP28.5■■■□□ 2.15
RUNX3-202ENST00000338888 CDK11AQ9UQ88 783 aaPredicted RBP28.5■■■□□ 2.15
RUNX3-202ENST00000338888 IGF1RP08069 1367 aa28.5■■■□□ 2.15
RUNX3-202ENST00000338888 FAM50AQ14320 339 aaKnown RBP28.5■■■□□ 2.15
RUNX3-202ENST00000338888 POLA1P09884 1462 aaPredicted RBP28.49■■■□□ 2.15
RUNX3-202ENST00000338888 TIMELESSQ9UNS1 1208 aa28.48■■■□□ 2.15
RUNX3-202ENST00000338888 URB2Q14146 1524 aaKnown RBP28.48■■■□□ 2.15
RUNX3-202ENST00000338888 PHLDB1Q86UU1 1377 aa28.42■■■□□ 2.14
RUNX3-202ENST00000338888 KIF21AQ7Z4S6 1674 aa28.41■■■□□ 2.14
RUNX3-202ENST00000338888 HNRNPUQ00839 825 aaKnown RBP eCLIP28.4■■■□□ 2.14
RUNX3-202ENST00000338888 TIAM1Q13009 1591 aa28.39■■■□□ 2.14
RUNX3-202ENST00000338888 CARMIL1Q5VZK9 1371 aa28.39■■■□□ 2.14
RUNX3-202ENST00000338888 ABCA10Q8WWZ4 1543 aa28.34■■■□□ 2.13
RUNX3-202ENST00000338888 LRRC9Q6ZRR7 1453 aa28.33■■■□□ 2.13
RUNX3-202ENST00000338888 MAP3K1Q13233 1512 aa28.29■■■□□ 2.12
RUNX3-202ENST00000338888 TDRD9Q8NDG6 1382 aaKnown RBP28.28■■■□□ 2.12
RUNX3-202ENST00000338888 TONSLQ96HA7 1378 aa28.26■■■□□ 2.11
RUNX3-202ENST00000338888 ATP1B4Q9UN42 357 aaPredicted RBP28.22■■■□□ 2.11
RUNX3-202ENST00000338888 DEKP35659 375 aaKnown RBP28.2■■■□□ 2.1
RUNX3-202ENST00000338888 PPP4R2Q9NY27 417 aa28.19■■■□□ 2.1
RUNX3-202ENST00000338888 MYT1LQ9UL68 1186 aa28.17■■■□□ 2.1
RUNX3-202ENST00000338888 P3H3Q8IVL6 736 aa28.15■■■□□ 2.1
RUNX3-202ENST00000338888 ERICH6BQ5W0A0 696 aa28.14■■■□□ 2.1
RUNX3-202ENST00000338888 MRC2Q9UBG0 1479 aa28.11■■■□□ 2.09
RUNX3-202ENST00000338888 GAPVD1Q14C86 1478 aa28.1■■■□□ 2.09
RUNX3-202ENST00000338888 B4GALNT3Q6L9W6 998 aa28.1■■■□□ 2.09
RUNX3-202ENST00000338888 FHAD1B1AJZ9 1412 aa28.06■■■□□ 2.08
RUNX3-202ENST00000338888 CCDC184Q52MB2 194 aa28.04■■■□□ 2.08
RUNX3-202ENST00000338888 ERCC6Q03468 1493 aa28.03■■■□□ 2.08
RUNX3-202ENST00000338888 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
RUNX3-202ENST00000338888 TARBP1Q13395 1621 aaKnown RBP28.02■■■□□ 2.08
RUNX3-202ENST00000338888 WASHC2AQ641Q2 1341 aa28.02■■■□□ 2.08
RUNX3-202ENST00000338888 CUL7Q14999 1698 aa28.01■■■□□ 2.07
RUNX3-202ENST00000338888 NBR1Q14596 966 aa28.01■■■□□ 2.07
RUNX3-202ENST00000338888 PCF11O94913 1555 aaKnown RBP28■■■□□ 2.07
RUNX3-202ENST00000338888 CFAP43Q8NDM7 1665 aa28■■■□□ 2.07
RUNX3-202ENST00000338888 AQRO60306 1485 aaKnown RBP eCLIP27.99■■■□□ 2.07
RUNX3-202ENST00000338888 CCDC18Q5T9S5 1454 aa27.99■■■□□ 2.07
RUNX3-202ENST00000338888 NOP58Q9Y2X3 529 aaKnown RBP27.98■■■□□ 2.07
RUNX3-202ENST00000338888 HSPA5P11021 654 aaKnown RBP27.97■■■□□ 2.07
RUNX3-202ENST00000338888 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.96■■■□□ 2.07
RUNX3-202ENST00000338888 FAM9BQ8IZU0 186 aa27.96■■■□□ 2.07
RUNX3-202ENST00000338888 PAK3O75914 559 aaPredicted RBP27.95■■■□□ 2.06
RUNX3-202ENST00000338888 UACAQ9BZF9 1416 aa27.94■■■□□ 2.06
RUNX3-202ENST00000338888 FHOD3Q2V2M9 1422 aa27.89■■■□□ 2.06
RUNX3-202ENST00000338888 PRKCSHP14314 528 aaPredicted RBP27.89■■■□□ 2.06
RUNX3-202ENST00000338888 PTPRKQ15262 1439 aa27.88■■■□□ 2.05
RUNX3-202ENST00000338888 WDR62O43379 1518 aa27.88■■■□□ 2.05
RUNX3-202ENST00000338888 KDM5BQ9UGL1 1544 aa27.88■■■□□ 2.05
RUNX3-202ENST00000338888 FGD6Q6ZV73 1430 aa27.87■■■□□ 2.05
RUNX3-202ENST00000338888 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
RUNX3-202ENST00000338888 HFM1A2PYH4 1435 aa27.86■■■□□ 2.05
RUNX3-202ENST00000338888 MRS2Q9HD23 443 aa27.85■■■□□ 2.05
RUNX3-202ENST00000338888 ZBED9Q6R2W3 1325 aa27.83■■■□□ 2.05
RUNX3-202ENST00000338888 EIF4G2P78344 907 aaKnown RBP eCLIP27.83■■■□□ 2.05
RUNX3-202ENST00000338888 PRKRIP1Q9H875 184 aaPredicted RBP27.83■■■□□ 2.05
RUNX3-202ENST00000338888 IFT140Q96RY7 1462 aa27.82■■■□□ 2.04
RUNX3-202ENST00000338888 CNTLNQ9NXG0 1405 aa27.81■■■□□ 2.04
RUNX3-202ENST00000338888 PTPN23Q9H3S7 1636 aa27.81■■■□□ 2.04
RUNX3-202ENST00000338888 CTTNBP2Q8WZ74 1663 aa27.81■■■□□ 2.04
RUNX3-202ENST00000338888 FYCO1Q9BQS8 1478 aa27.8■■■□□ 2.04
RUNX3-202ENST00000338888 PBRM1Q86U86 1689 aa27.8■■■□□ 2.04
RUNX3-202ENST00000338888 NAIPQ13075 1403 aa27.78■■■□□ 2.04
RUNX3-202ENST00000338888 CASKIN1Q8WXD9 1431 aa27.78■■■□□ 2.04
RUNX3-202ENST00000338888 C11orf95C9JLR9 678 aaPredicted RBP27.77■■■□□ 2.04
RUNX3-202ENST00000338888 NCOA2Q15596 1464 aa27.77■■■□□ 2.04
RUNX3-202ENST00000338888 GRIN2BQ13224 1484 aa27.75■■■□□ 2.03
RUNX3-202ENST00000338888 MTUS2Q5JR59 1369 aa27.72■■■□□ 2.03
RUNX3-202ENST00000338888 THOC2Q8NI27 1593 aaKnown RBP27.72■■■□□ 2.03
RUNX3-202ENST00000338888 ANP32AP39687 249 aaKnown RBP27.7■■■□□ 2.02
RUNX3-202ENST00000338888 IPO9Q96P70 1041 aaKnown RBP27.7■■■□□ 2.02
RUNX3-202ENST00000338888 FMN1Q68DA7 1419 aa27.69■■■□□ 2.02
RUNX3-202ENST00000338888 EFCAB5A4FU69 1503 aa27.69■■■□□ 2.02
RUNX3-202ENST00000338888 CCDC7Q96M83 1385 aa27.68■■■□□ 2.02
RUNX3-202ENST00000338888 ANO8Q9HCE9 1232 aaPredicted RBP27.68■■■□□ 2.02
RUNX3-202ENST00000338888 RTL5Q5HYW3 569 aaPredicted RBP27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms