RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CFTRP13569 1480 aa18.3■□□□□ 0.52
HMGCS1-201ENST00000325110 BIVM-ERCC5R4GMW8 1640 aa18.29■□□□□ 0.52
HMGCS1-201ENST00000325110 FKBP8Q14318 412 aa18.28■□□□□ 0.52
HMGCS1-201ENST00000325110 SETD5Q9C0A6 1442 aa18.28■□□□□ 0.52
HMGCS1-201ENST00000325110 PHLDB1Q86UU1 1377 aa18.28■□□□□ 0.52
HMGCS1-201ENST00000325110 CADPSQ9ULU8 1353 aa18.27■□□□□ 0.52
HMGCS1-201ENST00000325110 FHOD3Q2V2M9 1422 aa18.27■□□□□ 0.52
HMGCS1-201ENST00000325110 ANP32CO43423 234 aa18.26■□□□□ 0.51
HMGCS1-201ENST00000325110 FGD5Q6ZNL6 1462 aa18.25■□□□□ 0.51
HMGCS1-201ENST00000325110 CHIC2Q9UKJ5 165 aa18.25■□□□□ 0.51
HMGCS1-201ENST00000325110 CNGB1Q14028 1251 aaPredicted RBP18.24■□□□□ 0.51
HMGCS1-201ENST00000325110 TONSLQ96HA7 1378 aa18.23■□□□□ 0.51
HMGCS1-201ENST00000325110 HMGXB3Q12766 1538 aa18.22■□□□□ 0.51
HMGCS1-201ENST00000325110 MYT1Q01538 1121 aa18.22■□□□□ 0.51
HMGCS1-201ENST00000325110 MTUS2Q5JR59 1369 aa18.22■□□□□ 0.51
HMGCS1-201ENST00000325110 FHAD1B1AJZ9 1412 aa18.2■□□□□ 0.5
HMGCS1-201ENST00000325110 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
HMGCS1-201ENST00000325110 RRP7BPQ9NSQ0 103 aa18.17■□□□□ 0.5
HMGCS1-201ENST00000325110 LRRC9Q6ZRR7 1453 aa18.17■□□□□ 0.5
HMGCS1-201ENST00000325110 TDRD9Q8NDG6 1382 aaKnown RBP18.13■□□□□ 0.49
HMGCS1-201ENST00000325110 TIAM1Q13009 1591 aa18.12■□□□□ 0.49
HMGCS1-201ENST00000325110 FANCD2Q9BXW9 1451 aa18.11■□□□□ 0.49
HMGCS1-201ENST00000325110 PPP1R15AO75807 674 aaPredicted RBP18.11■□□□□ 0.49
HMGCS1-201ENST00000325110 POLR3GLQ9BT43 218 aa18.1■□□□□ 0.49
HMGCS1-201ENST00000325110 IRX6P78412 446 aaPredicted RBP18.08■□□□□ 0.48
HMGCS1-201ENST00000325110 TSHZ2Q9NRE2 1034 aa18.08■□□□□ 0.48
HMGCS1-201ENST00000325110 WDR97A6NE52 1622 aa18.07■□□□□ 0.48
HMGCS1-201ENST00000325110 HNRNPUQ00839 825 aaKnown RBP eCLIP18.07■□□□□ 0.48
HMGCS1-201ENST00000325110 MAPKBP1O60336 1514 aa18.05■□□□□ 0.48
HMGCS1-201ENST00000325110 NESP48681 1621 aa18.04■□□□□ 0.48
HMGCS1-201ENST00000325110 PCF11O94913 1555 aaKnown RBP18.01■□□□□ 0.47
HMGCS1-201ENST00000325110 FOXD1Q16676 465 aa18.01■□□□□ 0.47
HMGCS1-201ENST00000325110 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
HMGCS1-201ENST00000325110 TIMELESSQ9UNS1 1208 aa17.96■□□□□ 0.47
HMGCS1-201ENST00000325110 FMN1Q68DA7 1419 aa17.96■□□□□ 0.47
HMGCS1-201ENST00000325110 POLA1P09884 1462 aaPredicted RBP17.95■□□□□ 0.46
HMGCS1-201ENST00000325110 FGD6Q6ZV73 1430 aa17.95■□□□□ 0.46
HMGCS1-201ENST00000325110 FAM9BQ8IZU0 186 aa17.94■□□□□ 0.46
HMGCS1-201ENST00000325110 CCDC18Q5T9S5 1454 aa17.94■□□□□ 0.46
HMGCS1-201ENST00000325110 SENP3-EIF4A1A0A087X0R7 540 aa17.92■□□□□ 0.46
HMGCS1-201ENST00000325110 CC2D2AQ9P2K1 1620 aa17.92■□□□□ 0.46
HMGCS1-201ENST00000325110 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
HMGCS1-201ENST00000325110 CASKIN1Q8WXD9 1431 aa17.92■□□□□ 0.46
HMGCS1-201ENST00000325110 TOPBP1Q92547 1522 aa17.91■□□□□ 0.46
HMGCS1-201ENST00000325110 ZNF777Q9ULD5 760 aaPredicted RBP17.9■□□□□ 0.46
HMGCS1-201ENST00000325110 CCER2I3L3R5 266 aa17.9■□□□□ 0.46
HMGCS1-201ENST00000325110 HSPA5P11021 654 aaKnown RBP17.9■□□□□ 0.46
HMGCS1-201ENST00000325110 FYCO1Q9BQS8 1478 aa17.88■□□□□ 0.45
HMGCS1-201ENST00000325110 EIF4G2P78344 907 aaKnown RBP eCLIP17.88■□□□□ 0.45
HMGCS1-201ENST00000325110 FBLN2P98095 1184 aa17.88■□□□□ 0.45
HMGCS1-201ENST00000325110 MAP3K1Q13233 1512 aa17.88■□□□□ 0.45
HMGCS1-201ENST00000325110 ERICH6Q7L0X2 663 aa17.85■□□□□ 0.45
HMGCS1-201ENST00000325110 PTPRKQ15262 1439 aa17.84■□□□□ 0.45
HMGCS1-201ENST00000325110 NCOA2Q15596 1464 aa17.83■□□□□ 0.44
HMGCS1-201ENST00000325110 MRS2Q9HD23 443 aa17.83■□□□□ 0.44
HMGCS1-201ENST00000325110 SLC4A1APQ9BWU0 796 aaKnown RBP17.82■□□□□ 0.44
HMGCS1-201ENST00000325110 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
HMGCS1-201ENST00000325110 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
HMGCS1-201ENST00000325110 L3MBTL2Q969R5 705 aa17.81■□□□□ 0.44
HMGCS1-201ENST00000325110 GAPVD1Q14C86 1478 aa17.81■□□□□ 0.44
HMGCS1-201ENST00000325110 DNMBPQ6XZF7 1577 aa17.81■□□□□ 0.44
HMGCS1-201ENST00000325110 MPHOSPH9Q99550 1183 aa17.8■□□□□ 0.44
HMGCS1-201ENST00000325110 MYOM3Q5VTT5 1437 aa17.8■□□□□ 0.44
HMGCS1-201ENST00000325110 ANP32EQ9BTT0 268 aa17.8■□□□□ 0.44
HMGCS1-201ENST00000325110 RBM19Q9Y4C8 960 aaKnown RBP17.8■□□□□ 0.44
HMGCS1-201ENST00000325110 CDK11AQ9UQ88 783 aaPredicted RBP17.78■□□□□ 0.44
HMGCS1-201ENST00000325110 EFCAB5A4FU69 1503 aa17.78■□□□□ 0.44
HMGCS1-201ENST00000325110 HFM1A2PYH4 1435 aa17.77■□□□□ 0.43
HMGCS1-201ENST00000325110 NAIPQ13075 1403 aa17.77■□□□□ 0.43
HMGCS1-201ENST00000325110 WASHC2AQ641Q2 1341 aa17.75■□□□□ 0.43
HMGCS1-201ENST00000325110 AQRO60306 1485 aaKnown RBP eCLIP17.74■□□□□ 0.433e-7■■■■■ 29
HMGCS1-201ENST00000325110 ZNF644Q9H582 1327 aaPredicted RBP17.74■□□□□ 0.43
HMGCS1-201ENST00000325110 CFAP43Q8NDM7 1665 aa17.73■□□□□ 0.43
HMGCS1-201ENST00000325110 CCDC184Q52MB2 194 aa17.73■□□□□ 0.43
HMGCS1-201ENST00000325110 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
HMGCS1-201ENST00000325110 URB2Q14146 1524 aaKnown RBP17.72■□□□□ 0.43
HMGCS1-201ENST00000325110 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.7■□□□□ 0.424e-9■■□□□ 14.1
HMGCS1-201ENST00000325110 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
HMGCS1-201ENST00000325110 SNAPC4Q5SXM2 1469 aa17.68■□□□□ 0.42
HMGCS1-201ENST00000325110 B4GALNT3Q6L9W6 998 aa17.67■□□□□ 0.42
HMGCS1-201ENST00000325110 KDM2AQ9Y2K7 1162 aa17.67■□□□□ 0.42
HMGCS1-201ENST00000325110 CFDP1Q9UEE9 299 aaPredicted RBP17.67■□□□□ 0.42
HMGCS1-201ENST00000325110 PTPN23Q9H3S7 1636 aa17.66■□□□□ 0.42
HMGCS1-201ENST00000325110 C11orf95C9JLR9 678 aaPredicted RBP17.65■□□□□ 0.42
HMGCS1-201ENST00000325110 CUL7Q14999 1698 aa17.65■□□□□ 0.42
HMGCS1-201ENST00000325110 CDK13Q14004 1512 aaKnown RBP17.64■□□□□ 0.41
HMGCS1-201ENST00000325110 SALL2Q9Y467 1007 aaPredicted RBP17.64■□□□□ 0.41
HMGCS1-201ENST00000325110 NBPF8Q3BBV2 869 aa17.63■□□□□ 0.41
HMGCS1-201ENST00000325110 PRKRIP1Q9H875 184 aaPredicted RBP17.62■□□□□ 0.41
HMGCS1-201ENST00000325110 CHMP7Q8WUX9 453 aaPredicted RBP17.61■□□□□ 0.41
HMGCS1-201ENST00000325110 EHBP1L1Q8N3D4 1523 aa17.6■□□□□ 0.41
HMGCS1-201ENST00000325110 CTTNBP2Q8WZ74 1663 aa17.6■□□□□ 0.41
HMGCS1-201ENST00000325110 SUPT6HQ7KZ85 1726 aaKnown RBP17.59■□□□□ 0.41
HMGCS1-201ENST00000325110 GRIN2BQ13224 1484 aa17.59■□□□□ 0.41
HMGCS1-201ENST00000325110 PKD2Q13563 968 aa17.57■□□□□ 0.4
HMGCS1-201ENST00000325110 CCDC7Q96M83 1385 aa17.55■□□□□ 0.4
HMGCS1-201ENST00000325110 TMC1Q8TDI8 760 aa17.55■□□□□ 0.4
HMGCS1-201ENST00000325110 PPP4R2Q9NY27 417 aa17.55■□□□□ 0.4
HMGCS1-201ENST00000325110 EPRSP07814 1512 aaKnown RBP17.55■□□□□ 0.4
HMGCS1-201ENST00000325110 KIF7Q2M1P5 1343 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms