RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 DHX57Q6P158 1386 aaKnown RBP33.12■■■□□ 2.89
PNKP-201ENST00000322344 LRRC9Q6ZRR7 1453 aa33.09■■■□□ 2.89
PNKP-201ENST00000322344 CFAP43Q8NDM7 1665 aa33.06■■■□□ 2.88
PNKP-201ENST00000322344 CTTNBP2Q8WZ74 1663 aa33.05■■■□□ 2.88
PNKP-201ENST00000322344 PCF11O94913 1555 aaKnown RBP33.03■■■□□ 2.88
PNKP-201ENST00000322344 ABCA5Q8WWZ7 1642 aa33.02■■■□□ 2.88
PNKP-201ENST00000322344 AQRO60306 1485 aaKnown RBP eCLIP33.01■■■□□ 2.872e-6■■■■□ 20.5
PNKP-201ENST00000322344 FYCO1Q9BQS8 1478 aa32.99■■■□□ 2.87
PNKP-201ENST00000322344 FHOD3Q2V2M9 1422 aa32.94■■■□□ 2.86
PNKP-201ENST00000322344 CASKIN1Q8WXD9 1431 aa32.94■■■□□ 2.86
PNKP-201ENST00000322344 GAPVD1Q14C86 1478 aa32.93■■■□□ 2.86
PNKP-201ENST00000322344 P3H3Q8IVL6 736 aa32.89■■■□□ 2.85
PNKP-201ENST00000322344 KIF21AQ7Z4S6 1674 aa32.88■■■□□ 2.85
PNKP-201ENST00000322344 FMN1Q68DA7 1419 aa32.88■■■□□ 2.85
PNKP-201ENST00000322344 SCAF1Q9H7N4 1312 aaKnown RBP32.87■■■□□ 2.85
PNKP-201ENST00000322344 PHLDB1Q86UU1 1377 aa32.86■■■□□ 2.85
PNKP-201ENST00000322344 TDRD9Q8NDG6 1382 aaKnown RBP32.86■■■□□ 2.85
PNKP-201ENST00000322344 ACIN1Q9UKV3 1341 aaKnown RBP32.86■■■□□ 2.85
PNKP-201ENST00000322344 CENPBP07199 599 aaPredicted RBP32.85■■■□□ 2.85
PNKP-201ENST00000322344 SAMD9Q5K651 1589 aa32.8■■■□□ 2.84
PNKP-201ENST00000322344 ITGAEP38570 1179 aa32.78■■■□□ 2.84
PNKP-201ENST00000322344 TARBP1Q13395 1621 aaKnown RBP32.78■■■□□ 2.84
PNKP-201ENST00000322344 RAB3GAP2Q9H2M9 1393 aa32.77■■■□□ 2.84
PNKP-201ENST00000322344 DNAJC5BQ9UF47 199 aa32.77■■■□□ 2.84
PNKP-201ENST00000322344 SETD5Q9C0A6 1442 aa32.75■■■□□ 2.83
PNKP-201ENST00000322344 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.75■■■□□ 2.83
PNKP-201ENST00000322344 SNAPC4Q5SXM2 1469 aa32.74■■■□□ 2.83
PNKP-201ENST00000322344 ATP1B4Q9UN42 357 aaPredicted RBP32.74■■■□□ 2.83
PNKP-201ENST00000322344 NEUROD1Q13562 356 aa32.7■■■□□ 2.83
PNKP-201ENST00000322344 THOC2Q8NI27 1593 aaKnown RBP32.67■■■□□ 2.82
PNKP-201ENST00000322344 FAM50AQ14320 339 aaKnown RBP32.66■■■□□ 2.82
PNKP-201ENST00000322344 MRC2Q9UBG0 1479 aa32.62■■■□□ 2.81
PNKP-201ENST00000322344 MAPKBP1O60336 1514 aa32.61■■■□□ 2.81
PNKP-201ENST00000322344 PBRM1Q86U86 1689 aa32.6■■■□□ 2.81
PNKP-201ENST00000322344 GRIN2BQ13224 1484 aa32.59■■■□□ 2.81
PNKP-201ENST00000322344 MIER1Q8N108 512 aa32.58■■■□□ 2.81
PNKP-201ENST00000322344 MTUS2Q5JR59 1369 aa32.55■■■□□ 2.8
PNKP-201ENST00000322344 FGD6Q6ZV73 1430 aa32.54■■■□□ 2.8
PNKP-201ENST00000322344 ADAMTS12P58397 1594 aa32.51■■■□□ 2.8
PNKP-201ENST00000322344 LRRIQ1Q96JM4 1722 aa32.48■■■□□ 2.79
PNKP-201ENST00000322344 EHBP1L1Q8N3D4 1523 aa32.47■■■□□ 2.79
PNKP-201ENST00000322344 CCDC18Q5T9S5 1454 aa32.45■■■□□ 2.79
PNKP-201ENST00000322344 IQGAP2Q13576 1575 aa32.45■■■□□ 2.78
PNKP-201ENST00000322344 SUPT6HQ7KZ85 1726 aaKnown RBP32.43■■■□□ 2.78
PNKP-201ENST00000322344 IFT140Q96RY7 1462 aa32.43■■■□□ 2.78
PNKP-201ENST00000322344 NCOA2Q15596 1464 aa32.42■■■□□ 2.78
PNKP-201ENST00000322344 MYOM3Q5VTT5 1437 aa32.4■■■□□ 2.78
PNKP-201ENST00000322344 TIMELESSQ9UNS1 1208 aa32.38■■■□□ 2.77
PNKP-201ENST00000322344 WDR62O43379 1518 aa32.38■■■□□ 2.77
PNKP-201ENST00000322344 HECW1Q76N89 1606 aa32.37■■■□□ 2.77
PNKP-201ENST00000322344 GTF3C3Q9Y5Q9 886 aa32.34■■■□□ 2.77
PNKP-201ENST00000322344 ARHGEF11O15085 1522 aa32.34■■■□□ 2.77
PNKP-201ENST00000322344 UGGT2Q9NYU1 1516 aa32.33■■■□□ 2.77
PNKP-201ENST00000322344 HFM1A2PYH4 1435 aa32.31■■■□□ 2.76
PNKP-201ENST00000322344 YTHDC1Q96MU7 727 aaKnown RBP32.29■■■□□ 2.76
PNKP-201ENST00000322344 MAGI3Q5TCQ9 1506 aa32.24■■■□□ 2.75
PNKP-201ENST00000322344 PTPN23Q9H3S7 1636 aa32.24■■■□□ 2.75
PNKP-201ENST00000322344 PTPRKQ15262 1439 aa32.23■■■□□ 2.75
PNKP-201ENST00000322344 EPRSP07814 1512 aaKnown RBP32.23■■■□□ 2.75
PNKP-201ENST00000322344 ZNF608Q9ULD9 1512 aaPredicted RBP32.23■■■□□ 2.75
PNKP-201ENST00000322344 TCOF1Q13428 1488 aaKnown RBP32.2■■■□□ 2.75
PNKP-201ENST00000322344 UACAQ9BZF9 1416 aa32.2■■■□□ 2.75
PNKP-201ENST00000322344 SIN3AQ96ST3 1273 aa32.2■■■□□ 2.75
PNKP-201ENST00000322344 KIAA0586Q9BVV6 1533 aa32.19■■■□□ 2.74
PNKP-201ENST00000322344 NAIPQ13075 1403 aa32.16■■■□□ 2.74
PNKP-201ENST00000322344 PELP1Q8IZL8 1130 aaKnown RBP32.12■■■□□ 2.73
PNKP-201ENST00000322344 MIA2Q96PC5 1412 aa32.12■■■□□ 2.73
PNKP-201ENST00000322344 EIF4G3O43432 1585 aaKnown RBP32.11■■■□□ 2.73
PNKP-201ENST00000322344 KIAA0556O60303 1618 aa32.1■■■□□ 2.73
PNKP-201ENST00000322344 GRIN2AQ12879 1464 aa32.09■■■□□ 2.73
PNKP-201ENST00000322344 AKNAQ7Z591 1439 aa32.08■■■□□ 2.73
PNKP-201ENST00000322344 CDK13Q14004 1512 aaKnown RBP32.07■■■□□ 2.72
PNKP-201ENST00000322344 DISP1Q96F81 1524 aa32.06■■■□□ 2.72
PNKP-201ENST00000322344 PPP1R15AO75807 674 aaPredicted RBP32.05■■■□□ 2.72
PNKP-201ENST00000322344 ERCC6Q03468 1493 aa32.04■■■□□ 2.72
PNKP-201ENST00000322344 MAGI1Q96QZ7 1491 aaPredicted RBP32.03■■■□□ 2.72
PNKP-201ENST00000322344 GCC2Q8IWJ2 1684 aa32.02■■■□□ 2.72
PNKP-201ENST00000322344 TONSLQ96HA7 1378 aa31.99■■■□□ 2.71
PNKP-201ENST00000322344 RAPGEF6Q8TEU7 1601 aa31.95■■■□□ 2.7
PNKP-201ENST00000322344 SYNJ2O15056 1496 aa31.92■■■□□ 2.7
PNKP-201ENST00000322344 NUP153P49790 1475 aaKnown RBP31.92■■■□□ 2.7
PNKP-201ENST00000322344 CDK11AQ9UQ88 783 aaPredicted RBP31.88■■■□□ 2.69
PNKP-201ENST00000322344 RRP7BPQ9NSQ0 103 aa31.86■■■□□ 2.69
PNKP-201ENST00000322344 CEP170Q5SW79 1584 aa31.84■■■□□ 2.69
PNKP-201ENST00000322344 CHMP7Q8WUX9 453 aaPredicted RBP31.83■■■□□ 2.69
PNKP-201ENST00000322344 ROCK1Q13464 1354 aa31.83■■■□□ 2.69
PNKP-201ENST00000322344 CHIC2Q9UKJ5 165 aa31.82■■■□□ 2.68
PNKP-201ENST00000322344 ARID3CA6NKF2 412 aa31.8■■■□□ 2.68
PNKP-201ENST00000322344 DAPK1P53355 1430 aa31.78■■■□□ 2.68
PNKP-201ENST00000322344 DNMT1P26358 1616 aaKnown RBP31.78■■■□□ 2.68
PNKP-201ENST00000322344 NUP160Q12769 1436 aa31.78■■■□□ 2.68
PNKP-201ENST00000322344 DDX10Q13206 875 aaKnown RBP31.76■■■□□ 2.68
PNKP-201ENST00000322344 CARMIL2Q6F5E8 1435 aa31.76■■■□□ 2.68
PNKP-201ENST00000322344 TROQ12816 1431 aaPredicted RBP31.75■■■□□ 2.67
PNKP-201ENST00000322344 KDM6BO15054 1643 aa31.74■■■□□ 2.67
PNKP-201ENST00000322344 KDM5BQ9UGL1 1544 aa31.74■■■□□ 2.67
PNKP-201ENST00000322344 DENND4BO75064 1496 aaPredicted RBP31.72■■■□□ 2.67
PNKP-201ENST00000322344 TRIM52Q96A61 297 aa31.72■■■□□ 2.67
PNKP-201ENST00000322344 ABCC5O15440 1437 aa31.71■■■□□ 2.67
PNKP-201ENST00000322344 ADCY10Q96PN6 1610 aa31.67■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms