RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 VPS8Q8N3P4 1428 aa13.93□□□□□ -0.18
PTPRA-202ENST00000318266 URB2Q14146 1524 aaKnown RBP13.92□□□□□ -0.18
PTPRA-202ENST00000318266 FKBP8Q14318 412 aa13.92□□□□□ -0.18
PTPRA-202ENST00000318266 ARHGEF11O15085 1522 aa13.92□□□□□ -0.18
PTPRA-202ENST00000318266 KANK4Q5T7N3 995 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-202ENST00000318266 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
PTPRA-202ENST00000318266 DNMBPQ6XZF7 1577 aa13.84□□□□□ -0.19
PTPRA-202ENST00000318266 DDX10Q13206 875 aaKnown RBP13.82□□□□□ -0.2
PTPRA-202ENST00000318266 EIF4G3O43432 1585 aaKnown RBP13.81□□□□□ -0.2
PTPRA-202ENST00000318266 TRIM52Q96A61 297 aa13.79□□□□□ -0.2
PTPRA-202ENST00000318266 RBM19Q9Y4C8 960 aaKnown RBP13.79□□□□□ -0.2
PTPRA-202ENST00000318266 KIF21BO75037 1637 aa13.79□□□□□ -0.2
PTPRA-202ENST00000318266 HIRIP3Q9BW71 556 aaPredicted RBP13.79□□□□□ -0.2
PTPRA-202ENST00000318266 SYNJ1O43426 1573 aa13.78□□□□□ -0.2
PTPRA-202ENST00000318266 TOPBP1Q92547 1522 aa13.78□□□□□ -0.2
PTPRA-202ENST00000318266 NEFLP07196 543 aa13.77□□□□□ -0.2
PTPRA-202ENST00000318266 CHD1O14646 1710 aa13.77□□□□□ -0.2
PTPRA-202ENST00000318266 TARBP1Q13395 1621 aaKnown RBP13.76□□□□□ -0.21
PTPRA-202ENST00000318266 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
PTPRA-202ENST00000318266 ARAP1Q96P48 1450 aa13.72□□□□□ -0.21
PTPRA-202ENST00000318266 SIN3AQ96ST3 1273 aa13.7□□□□□ -0.22
PTPRA-202ENST00000318266 MAGI1Q96QZ7 1491 aaPredicted RBP13.68□□□□□ -0.22
PTPRA-202ENST00000318266 IRX6P78412 446 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-202ENST00000318266 CCNB3Q8WWL7 1395 aa13.66□□□□□ -0.22
PTPRA-202ENST00000318266 MSH5O43196 834 aa13.66□□□□□ -0.22
PTPRA-202ENST00000318266 ZNF608Q9ULD9 1512 aaPredicted RBP13.66□□□□□ -0.22
PTPRA-202ENST00000318266 RAB3GAP2Q9H2M9 1393 aa13.65□□□□□ -0.22
PTPRA-202ENST00000318266 ERICH6Q7L0X2 663 aa13.61□□□□□ -0.23
PTPRA-202ENST00000318266 RRBP1Q9P2E9 1410 aaKnown RBP13.61□□□□□ -0.23
PTPRA-202ENST00000318266 ANP32CO43423 234 aa13.61□□□□□ -0.23
PTPRA-202ENST00000318266 FAM50AQ14320 339 aaKnown RBP13.6□□□□□ -0.23
PTPRA-202ENST00000318266 PPP1R15AO75807 674 aaPredicted RBP13.58□□□□□ -0.23
PTPRA-202ENST00000318266 MAPKBP1O60336 1514 aa13.57□□□□□ -0.24
PTPRA-202ENST00000318266 ATP1B4Q9UN42 357 aaPredicted RBP13.56□□□□□ -0.24
PTPRA-202ENST00000318266 POLA1P09884 1462 aaPredicted RBP13.56□□□□□ -0.24
PTPRA-202ENST00000318266 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
PTPRA-202ENST00000318266 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
PTPRA-202ENST00000318266 HNRNPUQ00839 825 aaKnown RBP eCLIP13.53□□□□□ -0.24
PTPRA-202ENST00000318266 CDK11AQ9UQ88 783 aaPredicted RBP13.52□□□□□ -0.24
PTPRA-202ENST00000318266 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
PTPRA-202ENST00000318266 PBRM1Q86U86 1689 aa13.5□□□□□ -0.25
PTPRA-202ENST00000318266 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
PTPRA-202ENST00000318266 CCER2I3L3R5 266 aa13.5□□□□□ -0.25
PTPRA-202ENST00000318266 AEBP2Q6ZN18 517 aaPredicted RBP13.49□□□□□ -0.25
PTPRA-202ENST00000318266 CYB5RLQ6IPT4 315 aa13.48□□□□□ -0.25
PTPRA-202ENST00000318266 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
PTPRA-202ENST00000318266 P3H3Q8IVL6 736 aa13.48□□□□□ -0.25
PTPRA-202ENST00000318266 ARHGAP35Q9NRY4 1499 aa13.47□□□□□ -0.25
PTPRA-202ENST00000318266 AQRO60306 1485 aaKnown RBP eCLIP13.46□□□□□ -0.267e-8■■■■□ 24.7
PTPRA-202ENST00000318266 SHROOM2Q13796 1616 aa13.46□□□□□ -0.26
PTPRA-202ENST00000318266 ERICH3Q5RHP9 1530 aa13.45□□□□□ -0.26
PTPRA-202ENST00000318266 TOP2BQ02880 1626 aa13.45□□□□□ -0.26
PTPRA-202ENST00000318266 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
PTPRA-202ENST00000318266 PHLDB1Q86UU1 1377 aa13.44□□□□□ -0.26
PTPRA-202ENST00000318266 ABCA5Q8WWZ7 1642 aa13.44□□□□□ -0.26
PTPRA-202ENST00000318266 FANCIQ9NVI1 1328 aa13.44□□□□□ -0.26
PTPRA-202ENST00000318266 GAPVD1Q14C86 1478 aa13.43□□□□□ -0.26
PTPRA-202ENST00000318266 KIF27Q86VH2 1401 aa13.41□□□□□ -0.26
PTPRA-202ENST00000318266 TONSLQ96HA7 1378 aa13.41□□□□□ -0.26
PTPRA-202ENST00000318266 NBR1Q14596 966 aa13.41□□□□□ -0.26
PTPRA-202ENST00000318266 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
PTPRA-202ENST00000318266 B4GALNT3Q6L9W6 998 aa13.4□□□□□ -0.26
PTPRA-202ENST00000318266 FGD5Q6ZNL6 1462 aa13.4□□□□□ -0.26
PTPRA-202ENST00000318266 DEKP35659 375 aaKnown RBP13.39□□□□□ -0.27
PTPRA-202ENST00000318266 NUP160Q12769 1436 aa13.36□□□□□ -0.27
PTPRA-202ENST00000318266 FAM9BQ8IZU0 186 aa13.35□□□□□ -0.27
PTPRA-202ENST00000318266 CCDC184Q52MB2 194 aa13.35□□□□□ -0.27
PTPRA-202ENST00000318266 ADAMTS12P58397 1594 aa13.35□□□□□ -0.27
PTPRA-202ENST00000318266 CNGB1Q14028 1251 aaPredicted RBP13.34□□□□□ -0.27
PTPRA-202ENST00000318266 TIMELESSQ9UNS1 1208 aa13.34□□□□□ -0.27
PTPRA-202ENST00000318266 CHMP7Q8WUX9 453 aaPredicted RBP13.34□□□□□ -0.27
PTPRA-202ENST00000318266 KIF13AQ9H1H9 1805 aa13.34□□□□□ -0.27
PTPRA-202ENST00000318266 LRRC9Q6ZRR7 1453 aa13.33□□□□□ -0.27
PTPRA-202ENST00000318266 TIAM1Q13009 1591 aa13.33□□□□□ -0.28
PTPRA-202ENST00000318266 CUX1P39880 1505 aa13.33□□□□□ -0.28
PTPRA-202ENST00000318266 PPP4R2Q9NY27 417 aa13.33□□□□□ -0.28
PTPRA-202ENST00000318266 RAD54L2Q9Y4B4 1467 aa13.32□□□□□ -0.28
PTPRA-202ENST00000318266 BIVM-ERCC5R4GMW8 1640 aa13.32□□□□□ -0.28
PTPRA-202ENST00000318266 GRIN2AQ12879 1464 aa13.31□□□□□ -0.28
PTPRA-202ENST00000318266 SENP3-EIF4A1A0A087X0R7 540 aa13.31□□□□□ -0.28
PTPRA-202ENST00000318266 CEP170Q5SW79 1584 aa13.31□□□□□ -0.28
PTPRA-202ENST00000318266 PAK3O75914 559 aaPredicted RBP13.3□□□□□ -0.28
PTPRA-202ENST00000318266 WASHC2AQ641Q2 1341 aa13.27□□□□□ -0.28
PTPRA-202ENST00000318266 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.28
PTPRA-202ENST00000318266 HSPA5P11021 654 aaKnown RBP13.27□□□□□ -0.29
PTPRA-202ENST00000318266 FHAD1B1AJZ9 1412 aa13.27□□□□□ -0.29
PTPRA-202ENST00000318266 TDRD9Q8NDG6 1382 aaKnown RBP13.26□□□□□ -0.29
PTPRA-202ENST00000318266 IGF1RP08069 1367 aa13.25□□□□□ -0.29
PTPRA-202ENST00000318266 MRS2Q9HD23 443 aa13.25□□□□□ -0.29
PTPRA-202ENST00000318266 PRKCSHP14314 528 aaPredicted RBP13.24□□□□□ -0.29
PTPRA-202ENST00000318266 CARMIL1Q5VZK9 1371 aa13.23□□□□□ -0.29
PTPRA-202ENST00000318266 FBLN2P98095 1184 aa13.23□□□□□ -0.29
PTPRA-202ENST00000318266 ABCC10Q5T3U5 1492 aa13.23□□□□□ -0.29
PTPRA-202ENST00000318266 FHOD3Q2V2M9 1422 aa13.23□□□□□ -0.29
PTPRA-202ENST00000318266 MYT1LQ9UL68 1186 aa13.22□□□□□ -0.29
PTPRA-202ENST00000318266 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
PTPRA-202ENST00000318266 CHIC2Q9UKJ5 165 aa13.21□□□□□ -0.29
PTPRA-202ENST00000318266 ANO8Q9HCE9 1232 aaPredicted RBP13.2□□□□□ -0.3
PTPRA-202ENST00000318266 RRP7BPQ9NSQ0 103 aa13.2□□□□□ -0.3
PTPRA-202ENST00000318266 DIP2BQ9P265 1576 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms