RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HSP90AA1P07900 732 aaKnown RBP15.44■□□□□ 0.06
VPS39-201ENST00000318006 NEFMP07197 916 aa15.42■□□□□ 0.06
VPS39-201ENST00000318006 CCDC88BA6NC98 1476 aa15.4■□□□□ 0.06
VPS39-201ENST00000318006 CHGAP10645 457 aaKnown RBP15.4■□□□□ 0.06
VPS39-201ENST00000318006 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.4■□□□□ 0.069e-6■■■□□ 18.9
VPS39-201ENST00000318006 IRX6P78412 446 aaPredicted RBP15.39■□□□□ 0.05
VPS39-201ENST00000318006 RRP7BPQ9NSQ0 103 aa15.37■□□□□ 0.05
VPS39-201ENST00000318006 ESF1Q9H501 851 aaKnown RBP15.36■□□□□ 0.05
VPS39-201ENST00000318006 ARXQ96QS3 562 aa15.36■□□□□ 0.05
VPS39-201ENST00000318006 DDRGK1Q96HY6 314 aa15.34■□□□□ 0.05
VPS39-201ENST00000318006 SOGA1O94964 1423 aa15.33■□□□□ 0.05
VPS39-201ENST00000318006 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
VPS39-201ENST00000318006 MRS2Q9HD23 443 aa15.32■□□□□ 0.04
VPS39-201ENST00000318006 STAG3Q9UJ98 1225 aa15.32■□□□□ 0.04
VPS39-201ENST00000318006 KDM2AQ9Y2K7 1162 aa15.32■□□□□ 0.04
VPS39-201ENST00000318006 ABCC8Q09428 1581 aa15.31■□□□□ 0.04
VPS39-201ENST00000318006 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.31■□□□□ 0.04
VPS39-201ENST00000318006 SUPT16HQ9Y5B9 1047 aaKnown RBP15.31■□□□□ 0.04
VPS39-201ENST00000318006 EIF4G2P78344 907 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS39-201ENST00000318006 ERICH6BQ5W0A0 696 aa15.3■□□□□ 0.04
VPS39-201ENST00000318006 TMC1Q8TDI8 760 aa15.3■□□□□ 0.04
VPS39-201ENST00000318006 HIRIP3Q9BW71 556 aaPredicted RBP15.3■□□□□ 0.04
VPS39-201ENST00000318006 PPM1GO15355 546 aaPredicted RBP15.29■□□□□ 0.04
VPS39-201ENST00000318006 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
VPS39-201ENST00000318006 SLC24A1O60721 1099 aa15.27■□□□□ 0.04
VPS39-201ENST00000318006 SALL2Q9Y467 1007 aaPredicted RBP15.27■□□□□ 0.03
VPS39-201ENST00000318006 SMARCA4P51532 1647 aa15.26■□□□□ 0.03
VPS39-201ENST00000318006 TRIM44Q96DX7 344 aaPredicted RBP15.25■□□□□ 0.03
VPS39-201ENST00000318006 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
VPS39-201ENST00000318006 CARMIL1Q5VZK9 1371 aa15.25■□□□□ 0.03
VPS39-201ENST00000318006 CFDP1Q9UEE9 299 aaPredicted RBP15.24■□□□□ 0.03
VPS39-201ENST00000318006 RTN4Q9NQC3 1192 aaKnown RBP15.24■□□□□ 0.03
VPS39-201ENST00000318006 CUX2O14529 1486 aa15.24■□□□□ 0.03
VPS39-201ENST00000318006 KCNH8Q96L42 1107 aa15.24■□□□□ 0.03
VPS39-201ENST00000318006 NOP58Q9Y2X3 529 aaKnown RBP15.24■□□□□ 0.03
VPS39-201ENST00000318006 BECN1Q14457 450 aa15.23■□□□□ 0.03
VPS39-201ENST00000318006 FHAD1B1AJZ9 1412 aa15.22■□□□□ 0.03
VPS39-201ENST00000318006 TNNT2P45379 298 aaPredicted RBP15.2■□□□□ 0.02
VPS39-201ENST00000318006 CCNB3Q8WWL7 1395 aa15.19■□□□□ 0.02
VPS39-201ENST00000318006 DEKP35659 375 aaKnown RBP15.19■□□□□ 0.02
VPS39-201ENST00000318006 PPP4R2Q9NY27 417 aa15.18■□□□□ 0.02
VPS39-201ENST00000318006 ATAD2BQ9ULI0 1458 aa15.18■□□□□ 0.02
VPS39-201ENST00000318006 WDR43Q15061 677 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS39-201ENST00000318006 VPS8Q8N3P4 1428 aa15.16■□□□□ 0.02
VPS39-201ENST00000318006 ERCC6Q03468 1493 aa15.15■□□□□ 0.02
VPS39-201ENST00000318006 NAP1L5Q96NT1 182 aaPredicted RBP15.15■□□□□ 0.02
VPS39-201ENST00000318006 RBM19Q9Y4C8 960 aaKnown RBP15.14■□□□□ 0.01
VPS39-201ENST00000318006 SIN3AQ96ST3 1273 aa15.14■□□□□ 0.01
VPS39-201ENST00000318006 LAS1LQ9Y4W2 734 aaKnown RBP15.13■□□□□ 0.01
VPS39-201ENST00000318006 RGL3Q3MIN7 710 aa15.13■□□□□ 0.01
VPS39-201ENST00000318006 PLPPR3Q6T4P5 718 aa15.12■□□□□ 0.01
VPS39-201ENST00000318006 GOLGA6L22H0YM25 854 aa15.09■□□□□ 0.01
VPS39-201ENST00000318006 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
VPS39-201ENST00000318006 KANK4Q5T7N3 995 aaPredicted RBP15.06■□□□□ 0
VPS39-201ENST00000318006 CARD11Q9BXL7 1154 aa15.06■□□□□ 0
VPS39-201ENST00000318006 TIMELESSQ9UNS1 1208 aa15.04■□□□□ -0
VPS39-201ENST00000318006 PDS5BQ9NTI5 1447 aa15.03■□□□□ -0
VPS39-201ENST00000318006 TSHZ2Q9NRE2 1034 aa15.02■□□□□ -0
VPS39-201ENST00000318006 CDCA8Q53HL2 280 aa15.02□□□□□ -0.01
VPS39-201ENST00000318006 SETD5Q9C0A6 1442 aa15.01□□□□□ -0.01
VPS39-201ENST00000318006 ARHGAP35Q9NRY4 1499 aa15□□□□□ -0.01
VPS39-201ENST00000318006 NCLP19338 710 aaKnown RBP15□□□□□ -0.01
VPS39-201ENST00000318006 B4GALNT3Q6L9W6 998 aa15□□□□□ -0.01
VPS39-201ENST00000318006 TDRD9Q8NDG6 1382 aaKnown RBP15□□□□□ -0.01
VPS39-201ENST00000318006 PTMAP06454 111 aaKnown RBP14.99□□□□□ -0.01
VPS39-201ENST00000318006 CADPSQ9ULU8 1353 aa14.99□□□□□ -0.01
VPS39-201ENST00000318006 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
VPS39-201ENST00000318006 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
VPS39-201ENST00000318006 DNTTIP2Q5QJE6 756 aaKnown RBP14.98□□□□□ -0.01
VPS39-201ENST00000318006 KNSTRNQ9Y448 316 aa14.98□□□□□ -0.01
VPS39-201ENST00000318006 FMN1Q68DA7 1419 aa14.96□□□□□ -0.01
VPS39-201ENST00000318006 SENP3Q9H4L4 574 aaPredicted RBP14.96□□□□□ -0.01
VPS39-201ENST00000318006 L1TD1Q5T7N2 865 aaKnown RBP14.95□□□□□ -0.02
VPS39-201ENST00000318006 MYH16Q9H6N6 1097 aa14.95□□□□□ -0.02
VPS39-201ENST00000318006 CCER2I3L3R5 266 aa14.92□□□□□ -0.02
VPS39-201ENST00000318006 RAPGEF2Q9Y4G8 1499 aa14.92□□□□□ -0.02
VPS39-201ENST00000318006 CARMIL2Q6F5E8 1435 aa14.91□□□□□ -0.02
VPS39-201ENST00000318006 CDK11BP21127 795 aaKnown RBP14.91□□□□□ -0.02
VPS39-201ENST00000318006 CFAP53Q96M91 514 aa14.91□□□□□ -0.02
VPS39-201ENST00000318006 RAB3GAP2Q9H2M9 1393 aa14.9□□□□□ -0.02
VPS39-201ENST00000318006 DCAF11Q8TEB1 546 aa14.9□□□□□ -0.02
VPS39-201ENST00000318006 SENP3-EIF4A1A0A087X0R7 540 aa14.89□□□□□ -0.03
VPS39-201ENST00000318006 RGS3P49796 1198 aa14.88□□□□□ -0.03
VPS39-201ENST00000318006 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.88□□□□□ -0.03
VPS39-201ENST00000318006 PKD2Q13563 968 aa14.85□□□□□ -0.03
VPS39-201ENST00000318006 FHOD3Q2V2M9 1422 aa14.85□□□□□ -0.03
VPS39-201ENST00000318006 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
VPS39-201ENST00000318006 ARID4BQ4LE39 1312 aaPredicted RBP14.84□□□□□ -0.03
VPS39-201ENST00000318006 KANK1Q14678 1352 aa14.83□□□□□ -0.03
VPS39-201ENST00000318006 HSPA5P11021 654 aaKnown RBP14.83□□□□□ -0.04
VPS39-201ENST00000318006 TMF1P82094 1093 aa14.83□□□□□ -0.04
VPS39-201ENST00000318006 MSNP26038 577 aaKnown RBP14.82□□□□□ -0.04
VPS39-201ENST00000318006 MPHOSPH9Q99550 1183 aa14.82□□□□□ -0.04
VPS39-201ENST00000318006 FOXD1Q16676 465 aa14.82□□□□□ -0.04
VPS39-201ENST00000318006 PNNQ9H307 717 aaKnown RBP14.82□□□□□ -0.04
VPS39-201ENST00000318006 BICRAQ9NZM4 1560 aa14.82□□□□□ -0.04
VPS39-201ENST00000318006 CC2D1BQ5T0F9 858 aaKnown RBP14.81□□□□□ -0.04
VPS39-201ENST00000318006 POGKQ9P215 609 aa14.8□□□□□ -0.04
VPS39-201ENST00000318006 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
VPS39-201ENST00000318006 C14orf37Q86TY3 774 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms