RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NISCHQ9Y2I1 1504 aa20.09■□□□□ 0.81
VPS39-201ENST00000318006 DCAF8L2P0C7V8 631 aa19.8■□□□□ 0.76
VPS39-201ENST00000318006 SUPT5HO00267 1087 aaKnown RBP18.94■□□□□ 0.62
VPS39-201ENST00000318006 SHROOM4Q9ULL8 1493 aa18.74■□□□□ 0.59
VPS39-201ENST00000318006 PELP1Q8IZL8 1130 aaKnown RBP18.43■□□□□ 0.54
VPS39-201ENST00000318006 MYT1Q01538 1121 aa18.08■□□□□ 0.48
VPS39-201ENST00000318006 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
VPS39-201ENST00000318006 PCGF6Q9BYE7 350 aa17.92■□□□□ 0.46
VPS39-201ENST00000318006 CENPBP07199 599 aaPredicted RBP17.87■□□□□ 0.45
VPS39-201ENST00000318006 FAM9AQ8IZU1 332 aaPredicted RBP17.78■□□□□ 0.44
VPS39-201ENST00000318006 ZEB1P37275 1124 aaPredicted RBP17.76■□□□□ 0.43
VPS39-201ENST00000318006 APLP2Q06481 763 aa17.72■□□□□ 0.43
VPS39-201ENST00000318006 ERICH6Q7L0X2 663 aa17.64■□□□□ 0.41
VPS39-201ENST00000318006 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
VPS39-201ENST00000318006 CCER1Q8TC90 406 aaPredicted RBP17.55■□□□□ 0.4
VPS39-201ENST00000318006 TTBK1Q5TCY1 1321 aaPredicted RBP17.45■□□□□ 0.38
VPS39-201ENST00000318006 HRCP23327 699 aa17.37■□□□□ 0.37
VPS39-201ENST00000318006 RANGAP1P46060 587 aaPredicted RBP17.32■□□□□ 0.36
VPS39-201ENST00000318006 UBTFP17480 764 aaKnown RBP17.27■□□□□ 0.36
VPS39-201ENST00000318006 YTHDC1Q96MU7 727 aaKnown RBP17.24■□□□□ 0.35
VPS39-201ENST00000318006 NEFLP07196 543 aa17.24■□□□□ 0.35
VPS39-201ENST00000318006 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
VPS39-201ENST00000318006 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
VPS39-201ENST00000318006 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
VPS39-201ENST00000318006 ABCC9O60706 1549 aa16.97■□□□□ 0.31
VPS39-201ENST00000318006 PPARGC1BQ86YN6 1023 aaKnown RBP16.96■□□□□ 0.31
VPS39-201ENST00000318006 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
VPS39-201ENST00000318006 CCDC180Q9P1Z9 1646 aa16.77■□□□□ 0.28
VPS39-201ENST00000318006 ZCCHC6Q5VYS8 1495 aaKnown RBP16.74■□□□□ 0.27
VPS39-201ENST00000318006 PABPN1Q86U42 306 aaKnown RBP eCLIP16.69■□□□□ 0.26
VPS39-201ENST00000318006 DIEXFQ68CQ4 756 aaKnown RBP16.68■□□□□ 0.26
VPS39-201ENST00000318006 DAXXQ9UER7 740 aaPredicted RBP16.67■□□□□ 0.26
VPS39-201ENST00000318006 ITGAEP38570 1179 aa16.62■□□□□ 0.25
VPS39-201ENST00000318006 GTF3C3Q9Y5Q9 886 aa16.62■□□□□ 0.25
VPS39-201ENST00000318006 HNRNPUL2Q1KMD3 747 aaKnown RBP16.6■□□□□ 0.25
VPS39-201ENST00000318006 RTL5Q5HYW3 569 aaPredicted RBP16.59■□□□□ 0.25
VPS39-201ENST00000318006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.54■□□□□ 0.24
VPS39-201ENST00000318006 SCRIBQ14160 1630 aa16.44■□□□□ 0.22
VPS39-201ENST00000318006 ACIN1Q9UKV3 1341 aaKnown RBP16.43■□□□□ 0.22
VPS39-201ENST00000318006 MYT1LQ9UL68 1186 aa16.33■□□□□ 0.2
VPS39-201ENST00000318006 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
VPS39-201ENST00000318006 BCANQ96GW7 911 aa16.3■□□□□ 0.2
VPS39-201ENST00000318006 FAM50AQ14320 339 aaKnown RBP16.28■□□□□ 0.2
VPS39-201ENST00000318006 POLR3GLQ9BT43 218 aa16.28■□□□□ 0.2
VPS39-201ENST00000318006 CSRNP3Q8WYN3 585 aa16.25■□□□□ 0.19
VPS39-201ENST00000318006 CDK11AQ9UQ88 783 aaPredicted RBP16.25■□□□□ 0.19
VPS39-201ENST00000318006 CLSPNQ9HAW4 1339 aa16.14■□□□□ 0.17
VPS39-201ENST00000318006 CNGB1Q14028 1251 aaPredicted RBP16.12■□□□□ 0.17
VPS39-201ENST00000318006 TRIM52Q96A61 297 aa16.12■□□□□ 0.17
VPS39-201ENST00000318006 NEUROD1Q13562 356 aa16.08■□□□□ 0.17
VPS39-201ENST00000318006 ANP32CO43423 234 aa16.06■□□□□ 0.16
VPS39-201ENST00000318006 RB1CC1Q8TDY2 1594 aa16.06■□□□□ 0.16
VPS39-201ENST00000318006 DCAF1Q9Y4B6 1507 aa16.05■□□□□ 0.16
VPS39-201ENST00000318006 NACADO15069 1562 aa16.03■□□□□ 0.16
VPS39-201ENST00000318006 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
VPS39-201ENST00000318006 FBLN2P98095 1184 aa16.03■□□□□ 0.16
VPS39-201ENST00000318006 P3H3Q8IVL6 736 aa16.02■□□□□ 0.16
VPS39-201ENST00000318006 ANP32AP39687 249 aaKnown RBP15.99■□□□□ 0.15
VPS39-201ENST00000318006 RSF1Q96T23 1441 aaPredicted RBP15.96■□□□□ 0.15
VPS39-201ENST00000318006 EIF5BO60841 1220 aaKnown RBP15.96■□□□□ 0.14
VPS39-201ENST00000318006 SLC4A1APQ9BWU0 796 aaKnown RBP15.9■□□□□ 0.14
VPS39-201ENST00000318006 FKBP8Q14318 412 aa15.88■□□□□ 0.13
VPS39-201ENST00000318006 ARID3CA6NKF2 412 aa15.88■□□□□ 0.13
VPS39-201ENST00000318006 ZNF326Q5BKZ1 582 aaKnown RBP15.87■□□□□ 0.13
VPS39-201ENST00000318006 GLIPR1L2Q4G1C9 344 aa15.86■□□□□ 0.13
VPS39-201ENST00000318006 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
VPS39-201ENST00000318006 NPM2Q86SE8 214 aaKnown RBP15.77■□□□□ 0.11
VPS39-201ENST00000318006 ZNF777Q9ULD5 760 aaPredicted RBP15.76■□□□□ 0.11
VPS39-201ENST00000318006 MYO15BQ96JP2 1530 aa15.76■□□□□ 0.11
VPS39-201ENST00000318006 ANP32EQ9BTT0 268 aa15.71■□□□□ 0.11
VPS39-201ENST00000318006 EEA1Q15075 1411 aa15.7■□□□□ 0.1
VPS39-201ENST00000318006 CLIP1P30622 1438 aa15.69■□□□□ 0.1
VPS39-201ENST00000318006 NBR1Q14596 966 aa15.68■□□□□ 0.1
VPS39-201ENST00000318006 ZBTB47Q9UFB7 747 aaPredicted RBP15.66■□□□□ 0.1
VPS39-201ENST00000318006 TONSLQ96HA7 1378 aa15.66■□□□□ 0.1
VPS39-201ENST00000318006 BAZ1AQ9NRL2 1556 aaPredicted RBP15.65■□□□□ 0.1
VPS39-201ENST00000318006 WRNQ14191 1432 aaPredicted RBP eCLIP15.64■□□□□ 0.09
VPS39-201ENST00000318006 ANP32BQ92688 251 aaKnown RBP15.63■□□□□ 0.09
VPS39-201ENST00000318006 HNRNPUQ00839 825 aaKnown RBP eCLIP15.62■□□□□ 0.09
VPS39-201ENST00000318006 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
VPS39-201ENST00000318006 MROH2BQ7Z745 1585 aa15.62■□□□□ 0.09
VPS39-201ENST00000318006 BAZ1BQ9UIG0 1483 aaKnown RBP15.62■□□□□ 0.09
VPS39-201ENST00000318006 CANXP27824 592 aaKnown RBP15.61■□□□□ 0.09
VPS39-201ENST00000318006 CEP162Q5TB80 1403 aa15.6■□□□□ 0.09
VPS39-201ENST00000318006 MIER1Q8N108 512 aa15.6■□□□□ 0.09
VPS39-201ENST00000318006 MTUS2Q5JR59 1369 aa15.58■□□□□ 0.08
VPS39-201ENST00000318006 CHIC2Q9UKJ5 165 aa15.56■□□□□ 0.08
VPS39-201ENST00000318006 DDX10Q13206 875 aaKnown RBP15.55■□□□□ 0.08
VPS39-201ENST00000318006 CCDC136Q96JN2 1154 aa15.54■□□□□ 0.08
VPS39-201ENST00000318006 TNIKQ9UKE5 1360 aa15.53■□□□□ 0.08
VPS39-201ENST00000318006 CHMP7Q8WUX9 453 aaPredicted RBP15.51■□□□□ 0.07
VPS39-201ENST00000318006 KIF27Q86VH2 1401 aa15.5■□□□□ 0.07
VPS39-201ENST00000318006 CEP164Q9UPV0 1460 aa15.49■□□□□ 0.07
VPS39-201ENST00000318006 UPF2Q9HAU5 1272 aaKnown RBP15.49■□□□□ 0.07
VPS39-201ENST00000318006 BCL11AQ9H165 835 aa15.47■□□□□ 0.07
VPS39-201ENST00000318006 TSPY4P0CV99 314 aa15.46■□□□□ 0.07
VPS39-201ENST00000318006 TSPY10P0CW01 314 aa15.46■□□□□ 0.07
VPS39-201ENST00000318006 FAM9BQ8IZU0 186 aa15.46■□□□□ 0.07
VPS39-201ENST00000318006 NPM1P06748 294 aaKnown RBP eCLIP15.45■□□□□ 0.06
VPS39-201ENST00000318006 WIZO95785 1651 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms