RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 P3H3Q8IVL6 736 aa31.85■■■□□ 2.69
SHMT1-201ENST00000316694 LRRC9Q6ZRR7 1453 aa31.84■■■□□ 2.69
SHMT1-201ENST00000316694 DNMBPQ6XZF7 1577 aa31.84■■■□□ 2.69
SHMT1-201ENST00000316694 TOPBP1Q92547 1522 aa31.81■■■□□ 2.68
SHMT1-201ENST00000316694 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
SHMT1-201ENST00000316694 PHLDB1Q86UU1 1377 aa31.79■■■□□ 2.68
SHMT1-201ENST00000316694 MAPKBP1O60336 1514 aa31.78■■■□□ 2.68
SHMT1-201ENST00000316694 ATP1B4Q9UN42 357 aaPredicted RBP31.77■■■□□ 2.68
SHMT1-201ENST00000316694 FAM50AQ14320 339 aaKnown RBP31.76■■■□□ 2.68
SHMT1-201ENST00000316694 FHAD1B1AJZ9 1412 aa31.76■■■□□ 2.68
SHMT1-201ENST00000316694 ABCA10Q8WWZ4 1543 aa31.76■■■□□ 2.67
SHMT1-201ENST00000316694 SETD5Q9C0A6 1442 aa31.76■■■□□ 2.67
SHMT1-201ENST00000316694 PCF11O94913 1555 aaKnown RBP31.72■■■□□ 2.67
SHMT1-201ENST00000316694 CFAP43Q8NDM7 1665 aa31.68■■■□□ 2.66
SHMT1-201ENST00000316694 FHOD3Q2V2M9 1422 aa31.65■■■□□ 2.66
SHMT1-201ENST00000316694 SIN3AQ96ST3 1273 aa31.6■■■□□ 2.65
SHMT1-201ENST00000316694 URB2Q14146 1524 aaKnown RBP31.59■■■□□ 2.65
SHMT1-201ENST00000316694 DNAJC5BQ9UF47 199 aa31.57■■■□□ 2.64
SHMT1-201ENST00000316694 CUL7Q14999 1698 aa31.56■■■□□ 2.64
SHMT1-201ENST00000316694 LAMC3Q9Y6N6 1575 aa31.55■■■□□ 2.64
SHMT1-201ENST00000316694 FYCO1Q9BQS8 1478 aa31.53■■■□□ 2.64
SHMT1-201ENST00000316694 WDR97A6NE52 1622 aa31.53■■■□□ 2.64
SHMT1-201ENST00000316694 SUPT16HQ9Y5B9 1047 aaKnown RBP31.53■■■□□ 2.64
SHMT1-201ENST00000316694 TDRD9Q8NDG6 1382 aaKnown RBP31.52■■■□□ 2.64
SHMT1-201ENST00000316694 EFCAB5A4FU69 1503 aa31.51■■■□□ 2.63
SHMT1-201ENST00000316694 CTTNBP2Q8WZ74 1663 aa31.5■■■□□ 2.63
SHMT1-201ENST00000316694 KCNH8Q96L42 1107 aa31.49■■■□□ 2.63
SHMT1-201ENST00000316694 CASKIN1Q8WXD9 1431 aa31.49■■■□□ 2.63
SHMT1-201ENST00000316694 DDX10Q13206 875 aaKnown RBP31.42■■■□□ 2.62
SHMT1-201ENST00000316694 AQRO60306 1485 aaKnown RBP eCLIP31.42■■■□□ 2.62
SHMT1-201ENST00000316694 GAPVD1Q14C86 1478 aa31.38■■■□□ 2.61
SHMT1-201ENST00000316694 PDS5BQ9NTI5 1447 aa31.38■■■□□ 2.61
SHMT1-201ENST00000316694 ABCA5Q8WWZ7 1642 aa31.37■■■□□ 2.61
SHMT1-201ENST00000316694 FMN1Q68DA7 1419 aa31.37■■■□□ 2.61
SHMT1-201ENST00000316694 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.36■■■□□ 2.61
SHMT1-201ENST00000316694 TIMELESSQ9UNS1 1208 aa31.35■■■□□ 2.61
SHMT1-201ENST00000316694 FGD6Q6ZV73 1430 aa31.33■■■□□ 2.61
SHMT1-201ENST00000316694 HIRIP3Q9BW71 556 aaPredicted RBP31.32■■■□□ 2.6
SHMT1-201ENST00000316694 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
SHMT1-201ENST00000316694 SNAPC4Q5SXM2 1469 aa31.3■■■□□ 2.6
SHMT1-201ENST00000316694 MTUS2Q5JR59 1369 aa31.3■■■□□ 2.6
SHMT1-201ENST00000316694 MYT1Q01538 1121 aa31.3■■■□□ 2.6
SHMT1-201ENST00000316694 PPP1R15AO75807 674 aaPredicted RBP31.29■■■□□ 2.6
SHMT1-201ENST00000316694 SAMD9Q5K651 1589 aa31.24■■■□□ 2.59
SHMT1-201ENST00000316694 CCDC18Q5T9S5 1454 aa31.22■■■□□ 2.59
SHMT1-201ENST00000316694 LRRIQ1Q96JM4 1722 aa31.2■■■□□ 2.59
SHMT1-201ENST00000316694 TONSLQ96HA7 1378 aa31.19■■■□□ 2.58
SHMT1-201ENST00000316694 PTPRKQ15262 1439 aa31.18■■■□□ 2.58
SHMT1-201ENST00000316694 TARBP1Q13395 1621 aaKnown RBP31.17■■■□□ 2.58
SHMT1-201ENST00000316694 HFM1A2PYH4 1435 aa31.15■■■□□ 2.58
SHMT1-201ENST00000316694 NCOA2Q15596 1464 aa31.14■■■□□ 2.57
SHMT1-201ENST00000316694 PTPN23Q9H3S7 1636 aa31.12■■■□□ 2.57
SHMT1-201ENST00000316694 GRIN2BQ13224 1484 aa31.12■■■□□ 2.57
SHMT1-201ENST00000316694 UACAQ9BZF9 1416 aa31.12■■■□□ 2.57
SHMT1-201ENST00000316694 MYOM3Q5VTT5 1437 aa31.1■■■□□ 2.57
SHMT1-201ENST00000316694 ANP32CO43423 234 aa31.08■■■□□ 2.57
SHMT1-201ENST00000316694 SUPT6HQ7KZ85 1726 aaKnown RBP31.06■■■□□ 2.56
SHMT1-201ENST00000316694 NAIPQ13075 1403 aa31.06■■■□□ 2.56
SHMT1-201ENST00000316694 BCANQ96GW7 911 aa31.04■■■□□ 2.56
SHMT1-201ENST00000316694 CCER2I3L3R5 266 aa31.02■■■□□ 2.56
SHMT1-201ENST00000316694 EHBP1L1Q8N3D4 1523 aa31.02■■■□□ 2.56
SHMT1-201ENST00000316694 TSHZ2Q9NRE2 1034 aa31.02■■■□□ 2.56
SHMT1-201ENST00000316694 THOC2Q8NI27 1593 aaKnown RBP31.01■■■□□ 2.56
SHMT1-201ENST00000316694 PBRM1Q86U86 1689 aa31.01■■■□□ 2.55
SHMT1-201ENST00000316694 FKBP8Q14318 412 aa31■■■□□ 2.55
SHMT1-201ENST00000316694 TRIM52Q96A61 297 aa30.99■■■□□ 2.55
SHMT1-201ENST00000316694 MAGI3Q5TCQ9 1506 aa30.96■■■□□ 2.55
SHMT1-201ENST00000316694 UGGT2Q9NYU1 1516 aa30.94■■■□□ 2.54
SHMT1-201ENST00000316694 RRP7BPQ9NSQ0 103 aa30.93■■■□□ 2.54
SHMT1-201ENST00000316694 CHIC2Q9UKJ5 165 aa30.92■■■□□ 2.54
SHMT1-201ENST00000316694 IQGAP2Q13576 1575 aa30.9■■■□□ 2.54
SHMT1-201ENST00000316694 MRC2Q9UBG0 1479 aa30.89■■■□□ 2.54
SHMT1-201ENST00000316694 ADAMTS12P58397 1594 aa30.89■■■□□ 2.53
SHMT1-201ENST00000316694 ARID3CA6NKF2 412 aa30.88■■■□□ 2.53
SHMT1-201ENST00000316694 ARHGEF11O15085 1522 aa30.87■■■□□ 2.53
SHMT1-201ENST00000316694 NEFLP07196 543 aa30.86■■■□□ 2.53
SHMT1-201ENST00000316694 KDM5BQ9UGL1 1544 aa30.84■■■□□ 2.53
SHMT1-201ENST00000316694 HECW1Q76N89 1606 aa30.82■■■□□ 2.52
SHMT1-201ENST00000316694 EPRSP07814 1512 aaKnown RBP30.81■■■□□ 2.52
SHMT1-201ENST00000316694 ZNF608Q9ULD9 1512 aaPredicted RBP30.81■■■□□ 2.52
SHMT1-201ENST00000316694 CDK13Q14004 1512 aaKnown RBP30.8■■■□□ 2.52
SHMT1-201ENST00000316694 TCOF1Q13428 1488 aaKnown RBP30.79■■■□□ 2.52
SHMT1-201ENST00000316694 GCC2Q8IWJ2 1684 aa30.77■■■□□ 2.52
SHMT1-201ENST00000316694 KDM6BO15054 1643 aa30.73■■■□□ 2.51
SHMT1-201ENST00000316694 DENND4BO75064 1496 aaPredicted RBP30.73■■■□□ 2.51
SHMT1-201ENST00000316694 HSPA5P11021 654 aaKnown RBP30.71■■■□□ 2.51
SHMT1-201ENST00000316694 WDR62O43379 1518 aa30.71■■■□□ 2.51
SHMT1-201ENST00000316694 IFT140Q96RY7 1462 aa30.69■■■□□ 2.5
SHMT1-201ENST00000316694 AKNAQ7Z591 1439 aa30.67■■■□□ 2.5
SHMT1-201ENST00000316694 WASHC2AQ641Q2 1341 aa30.67■■■□□ 2.5
SHMT1-201ENST00000316694 MPHOSPH9Q99550 1183 aa30.67■■■□□ 2.5
SHMT1-201ENST00000316694 MIA2Q96PC5 1412 aa30.66■■■□□ 2.5
SHMT1-201ENST00000316694 FOXD1Q16676 465 aa30.64■■■□□ 2.49
SHMT1-201ENST00000316694 HNRNPUQ00839 825 aaKnown RBP eCLIP30.63■■■□□ 2.49
SHMT1-201ENST00000316694 EIF4G2P78344 907 aaKnown RBP eCLIP30.62■■■□□ 2.49
SHMT1-201ENST00000316694 DISP1Q96F81 1524 aa30.6■■■□□ 2.49
SHMT1-201ENST00000316694 KIAA0586Q9BVV6 1533 aa30.6■■■□□ 2.49
SHMT1-201ENST00000316694 L3MBTL2Q969R5 705 aa30.59■■■□□ 2.49
SHMT1-201ENST00000316694 KIAA0556O60303 1618 aa30.57■■■□□ 2.48
SHMT1-201ENST00000316694 EIF4G3O43432 1585 aaKnown RBP30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms