RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 PLEKHG5O94827 1062 aa9.65□□□□□ -0.86
ZNF540-201ENST00000316433 CCDC136Q96JN2 1154 aa9.65□□□□□ -0.86
ZNF540-201ENST00000316433 TIAM1Q13009 1591 aa9.64□□□□□ -0.87
ZNF540-201ENST00000316433 CTTNBP2Q8WZ74 1663 aa9.63□□□□□ -0.87
ZNF540-201ENST00000316433 PKNOX2Q96KN3 472 aa9.63□□□□□ -0.87
ZNF540-201ENST00000316433 KIF27Q86VH2 1401 aa9.62□□□□□ -0.87
ZNF540-201ENST00000316433 CCER1Q8TC90 406 aaPredicted RBP9.6□□□□□ -0.87
ZNF540-201ENST00000316433 DEKP35659 375 aaKnown RBP9.6□□□□□ -0.87
ZNF540-201ENST00000316433 ZNF316A6NFI3 1004 aaPredicted RBP9.59□□□□□ -0.87
ZNF540-201ENST00000316433 MIER1Q8N108 512 aa9.59□□□□□ -0.87
ZNF540-201ENST00000316433 PHF23Q9BUL5 403 aaPredicted RBP9.59□□□□□ -0.87
ZNF540-201ENST00000316433 RBM19Q9Y4C8 960 aaKnown RBP9.59□□□□□ -0.87
ZNF540-201ENST00000316433 DNMBPQ6XZF7 1577 aa9.58□□□□□ -0.88
ZNF540-201ENST00000316433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.58□□□□□ -0.88
ZNF540-201ENST00000316433 ARHGAP35Q9NRY4 1499 aa9.58□□□□□ -0.88
ZNF540-201ENST00000316433 SAMD9Q5K651 1589 aa9.58□□□□□ -0.88
ZNF540-201ENST00000316433 PODXL2Q9NZ53 605 aa9.57□□□□□ -0.88
ZNF540-201ENST00000316433 FYCO1Q9BQS8 1478 aa9.56□□□□□ -0.88
ZNF540-201ENST00000316433 MSH5O43196 834 aa9.56□□□□□ -0.88
ZNF540-201ENST00000316433 ABCA10Q8WWZ4 1543 aa9.55□□□□□ -0.88
ZNF540-201ENST00000316433 DHX57Q6P158 1386 aaKnown RBP9.54□□□□□ -0.88
ZNF540-201ENST00000316433 TIMELESSQ9UNS1 1208 aa9.54□□□□□ -0.88
ZNF540-201ENST00000316433 ABCA5Q8WWZ7 1642 aa9.53□□□□□ -0.88
ZNF540-201ENST00000316433 ARHGEF11O15085 1522 aa9.52□□□□□ -0.88
ZNF540-201ENST00000316433 MAPKBP1O60336 1514 aa9.52□□□□□ -0.88
ZNF540-201ENST00000316433 FHAD1B1AJZ9 1412 aa9.52□□□□□ -0.89
ZNF540-201ENST00000316433 AKNAQ7Z591 1439 aa9.52□□□□□ -0.89
ZNF540-201ENST00000316433 FGD5Q6ZNL6 1462 aa9.51□□□□□ -0.89
ZNF540-201ENST00000316433 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.51□□□□□ -0.89
ZNF540-201ENST00000316433 LAMC3Q9Y6N6 1575 aa9.51□□□□□ -0.89
ZNF540-201ENST00000316433 GCC2Q8IWJ2 1684 aa9.5□□□□□ -0.89
ZNF540-201ENST00000316433 POLR1AO95602 1720 aaPredicted RBP9.49□□□□□ -0.89
ZNF540-201ENST00000316433 LRRC9Q6ZRR7 1453 aa9.49□□□□□ -0.89
ZNF540-201ENST00000316433 CASKIN1Q8WXD9 1431 aa9.47□□□□□ -0.89
ZNF540-201ENST00000316433 PCF11O94913 1555 aaKnown RBP9.47□□□□□ -0.89
ZNF540-201ENST00000316433 HECW1Q76N89 1606 aa9.46□□□□□ -0.89
ZNF540-201ENST00000316433 FANCIQ9NVI1 1328 aa9.46□□□□□ -0.9
ZNF540-201ENST00000316433 CCNB3Q8WWL7 1395 aa9.45□□□□□ -0.9
ZNF540-201ENST00000316433 EHMT2Q96KQ7 1210 aa9.45□□□□□ -0.9
ZNF540-201ENST00000316433 CADPSQ9ULU8 1353 aa9.45□□□□□ -0.9
ZNF540-201ENST00000316433 SNAPC4Q5SXM2 1469 aa9.44□□□□□ -0.9
ZNF540-201ENST00000316433 TCOF1Q13428 1488 aaKnown RBP9.44□□□□□ -0.9
ZNF540-201ENST00000316433 IGF1RP08069 1367 aa9.43□□□□□ -0.9
ZNF540-201ENST00000316433 LRRIQ1Q96JM4 1722 aa9.42□□□□□ -0.9
ZNF540-201ENST00000316433 EHBP1L1Q8N3D4 1523 aa9.42□□□□□ -0.9
ZNF540-201ENST00000316433 CCDC18Q5T9S5 1454 aa9.4□□□□□ -0.9
ZNF540-201ENST00000316433 BCANQ96GW7 911 aa9.4□□□□□ -0.9
ZNF540-201ENST00000316433 IL27Q8NEV9 243 aa9.39□□□□□ -0.91
ZNF540-201ENST00000316433 SUPT6HQ7KZ85 1726 aaKnown RBP9.39□□□□□ -0.91
ZNF540-201ENST00000316433 GRIN2BQ13224 1484 aa9.38□□□□□ -0.91
ZNF540-201ENST00000316433 NCBP3Q53F19 620 aaKnown RBP9.38□□□□□ -0.91
ZNF540-201ENST00000316433 SETD5Q9C0A6 1442 aa9.37□□□□□ -0.91
ZNF540-201ENST00000316433 RTN4Q9NQC3 1192 aaKnown RBP9.37□□□□□ -0.91
ZNF540-201ENST00000316433 TOPBP1Q92547 1522 aa9.37□□□□□ -0.91
ZNF540-201ENST00000316433 KDM5BQ9UGL1 1544 aa9.37□□□□□ -0.91
ZNF540-201ENST00000316433 FMN1Q68DA7 1419 aa9.37□□□□□ -0.91
ZNF540-201ENST00000316433 PTPN23Q9H3S7 1636 aa9.37□□□□□ -0.91
ZNF540-201ENST00000316433 UGGT2Q9NYU1 1516 aa9.36□□□□□ -0.91
ZNF540-201ENST00000316433 TARBP1Q13395 1621 aaKnown RBP9.36□□□□□ -0.91
ZNF540-201ENST00000316433 UBTFP17480 764 aaKnown RBP9.36□□□□□ -0.91
ZNF540-201ENST00000316433 HFM1A2PYH4 1435 aa9.35□□□□□ -0.91
ZNF540-201ENST00000316433 PLPPR3Q6T4P5 718 aa9.35□□□□□ -0.91
ZNF540-201ENST00000316433 ADCY10Q96PN6 1610 aa9.35□□□□□ -0.91
ZNF540-201ENST00000316433 PBRM1Q86U86 1689 aa9.35□□□□□ -0.91
ZNF540-201ENST00000316433 FKBP8Q14318 412 aa9.33□□□□□ -0.92
ZNF540-201ENST00000316433 POLA1P09884 1462 aaPredicted RBP9.33□□□□□ -0.92
ZNF540-201ENST00000316433 FANCD2Q9BXW9 1451 aa9.33□□□□□ -0.92
ZNF540-201ENST00000316433 CARMIL1Q5VZK9 1371 aa9.33□□□□□ -0.92
ZNF540-201ENST00000316433 NEFLP07196 543 aa9.33□□□□□ -0.92
ZNF540-201ENST00000316433 NCOA2Q15596 1464 aa9.3□□□□□ -0.92
ZNF540-201ENST00000316433 UACAQ9BZF9 1416 aa9.3□□□□□ -0.92
ZNF540-201ENST00000316433 ADAMTS12P58397 1594 aa9.3□□□□□ -0.92
ZNF540-201ENST00000316433 MIA2Q96PC5 1412 aa9.29□□□□□ -0.92
ZNF540-201ENST00000316433 GLIPR1L2Q4G1C9 344 aa9.29□□□□□ -0.92
ZNF540-201ENST00000316433 CROCC2H7BZ55 1655 aa9.29□□□□□ -0.92
ZNF540-201ENST00000316433 ADGBQ8N7X0 1667 aa9.29□□□□□ -0.92
ZNF540-201ENST00000316433 RAB3GAP2Q9H2M9 1393 aa9.29□□□□□ -0.92
ZNF540-201ENST00000316433 FGD6Q6ZV73 1430 aa9.28□□□□□ -0.92
ZNF540-201ENST00000316433 CCER2I3L3R5 266 aa9.28□□□□□ -0.92
ZNF540-201ENST00000316433 IQGAP2Q13576 1575 aa9.27□□□□□ -0.92
ZNF540-201ENST00000316433 NBR1Q14596 966 aa9.27□□□□□ -0.93
ZNF540-201ENST00000316433 ZMYND15Q9H091 742 aa9.27□□□□□ -0.93
ZNF540-201ENST00000316433 WDR62O43379 1518 aa9.26□□□□□ -0.93
ZNF540-201ENST00000316433 ITGAEP38570 1179 aa9.26□□□□□ -0.93
ZNF540-201ENST00000316433 DNMT1P26358 1616 aaKnown RBP9.26□□□□□ -0.93
ZNF540-201ENST00000316433 NESP48681 1621 aa9.26□□□□□ -0.93
ZNF540-201ENST00000316433 PHLDB1Q86UU1 1377 aa9.25□□□□□ -0.93
ZNF540-201ENST00000316433 ITSN2Q9NZM3 1697 aa9.25□□□□□ -0.93
ZNF540-201ENST00000316433 MYOM3Q5VTT5 1437 aa9.25□□□□□ -0.93
ZNF540-201ENST00000316433 ROCK1Q13464 1354 aa9.24□□□□□ -0.93
ZNF540-201ENST00000316433 URB2Q14146 1524 aaKnown RBP9.24□□□□□ -0.93
ZNF540-201ENST00000316433 KDM5DQ9BY66 1539 aa9.23□□□□□ -0.93
ZNF540-201ENST00000316433 RTL5Q5HYW3 569 aaPredicted RBP9.22□□□□□ -0.93
ZNF540-201ENST00000316433 KANK4Q5T7N3 995 aaPredicted RBP9.22□□□□□ -0.93
ZNF540-201ENST00000316433 NOP58Q9Y2X3 529 aaKnown RBP9.21□□□□□ -0.93
ZNF540-201ENST00000316433 VSIG10Q8N0Z9 540 aa9.21□□□□□ -0.94
ZNF540-201ENST00000316433 CDK11AQ9UQ88 783 aaPredicted RBP9.21□□□□□ -0.94
ZNF540-201ENST00000316433 ADGRL2O95490 1459 aa9.21□□□□□ -0.94
ZNF540-201ENST00000316433 ZMYM4Q5VZL5 1548 aa9.21□□□□□ -0.94
ZNF540-201ENST00000316433 LAMC1P11047 1609 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms