RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MSNP26038 577 aaKnown RBP18.13■□□□□ 0.49
CCDC88A-201ENST00000263630 NOC3LQ8WTT2 800 aaKnown RBP18.12■□□□□ 0.49
CCDC88A-201ENST00000263630 ZNF777Q9ULD5 760 aaPredicted RBP18.11■□□□□ 0.49
CCDC88A-201ENST00000263630 USP35Q9P2H5 1018 aa18.11■□□□□ 0.49
CCDC88A-201ENST00000263630 TNNT3P45378 269 aaPredicted RBP18.1■□□□□ 0.49
CCDC88A-201ENST00000263630 CLSTN1O94985 981 aa18.09■□□□□ 0.49
CCDC88A-201ENST00000263630 PNNQ9H307 717 aaKnown RBP18.09■□□□□ 0.49
CCDC88A-201ENST00000263630 AMER1Q5JTC6 1135 aaPredicted RBP18.08■□□□□ 0.48
CCDC88A-201ENST00000263630 FGD1P98174 961 aa18.06■□□□□ 0.48
CCDC88A-201ENST00000263630 GOLGA6L4A6NEF3 574 aa18.05■□□□□ 0.48
CCDC88A-201ENST00000263630 CHMP4BQ9H444 224 aaKnown RBP18.05■□□□□ 0.48
CCDC88A-201ENST00000263630 TPRNQ4KMQ1 711 aa18.04■□□□□ 0.48
CCDC88A-201ENST00000263630 FTSJ3Q8IY81 847 aaKnown RBP18.03■□□□□ 0.48
CCDC88A-201ENST00000263630 DRC7Q8IY82 874 aa18.03■□□□□ 0.48
CCDC88A-201ENST00000263630 CALRP27797 417 aaKnown RBP18.03■□□□□ 0.48
CCDC88A-201ENST00000263630 PRM3Q9NNZ6 103 aa18.02■□□□□ 0.47
CCDC88A-201ENST00000263630 GOLGA6L1Q8N7Z2 621 aa18.01■□□□□ 0.47
CCDC88A-201ENST00000263630 HSP90AB1P08238 724 aaKnown RBP18.01■□□□□ 0.47
CCDC88A-201ENST00000263630 MRS2Q9HD23 443 aa18.01■□□□□ 0.47
CCDC88A-201ENST00000263630 NPHP1O15259 732 aa17.99■□□□□ 0.47
CCDC88A-201ENST00000263630 GOLGA2Q08379 1002 aa17.99■□□□□ 0.47
CCDC88A-201ENST00000263630 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
CCDC88A-201ENST00000263630 DDX10Q13206 875 aaKnown RBP17.98■□□□□ 0.47
CCDC88A-201ENST00000263630 A0A0U1RQG5 324 aaPredicted RBP17.96■□□□□ 0.47
CCDC88A-201ENST00000263630 SETQ01105 290 aaPredicted RBP17.95■□□□□ 0.46
CCDC88A-201ENST00000263630 KCNJ4P48050 445 aa17.95■□□□□ 0.46
CCDC88A-201ENST00000263630 CFAP44Q96MT7 982 aa17.94■□□□□ 0.46
CCDC88A-201ENST00000263630 NPM1P06748 294 aaKnown RBP eCLIP17.93■□□□□ 0.46
CCDC88A-201ENST00000263630 PTMSP20962 102 aa17.93■□□□□ 0.46
CCDC88A-201ENST00000263630 C14orf37Q86TY3 774 aa17.93■□□□□ 0.46
CCDC88A-201ENST00000263630 CFAP53Q96M91 514 aa17.93■□□□□ 0.46
CCDC88A-201ENST00000263630 ZBTB7CA1YPR0 619 aa17.91■□□□□ 0.46
CCDC88A-201ENST00000263630 NAP1L2Q9ULW6 460 aaPredicted RBP17.91■□□□□ 0.46
CCDC88A-201ENST00000263630 HAP1P54257 671 aaPredicted RBP17.91■□□□□ 0.46
CCDC88A-201ENST00000263630 MCCP23508 829 aa17.9■□□□□ 0.46
CCDC88A-201ENST00000263630 MS4A1P11836 297 aa17.88■□□□□ 0.45
CCDC88A-201ENST00000263630 OS9Q13438 667 aaPredicted RBP17.87■□□□□ 0.45
CCDC88A-201ENST00000263630 GNL2Q13823 731 aaKnown RBP17.87■□□□□ 0.45
CCDC88A-201ENST00000263630 HSCBQ8IWL3 235 aa17.87■□□□□ 0.45
CCDC88A-201ENST00000263630 TAOK2Q9UL54 1235 aa17.86■□□□□ 0.45
CCDC88A-201ENST00000263630 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
CCDC88A-201ENST00000263630 ARID3CA6NKF2 412 aa17.84■□□□□ 0.45
CCDC88A-201ENST00000263630 TPM4P67936 248 aa17.84■□□□□ 0.45
CCDC88A-201ENST00000263630 EIF4G2P78344 907 aaKnown RBP eCLIP17.84■□□□□ 0.45
CCDC88A-201ENST00000263630 NOP58Q9Y2X3 529 aaKnown RBP17.82■□□□□ 0.44
CCDC88A-201ENST00000263630 CDCA8Q53HL2 280 aa17.82■□□□□ 0.44
CCDC88A-201ENST00000263630 CCDC34Q96HJ3 373 aa17.82■□□□□ 0.44
CCDC88A-201ENST00000263630 HTATSF1O43719 755 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-201ENST00000263630 IRX6P78412 446 aaPredicted RBP17.81■□□□□ 0.44
CCDC88A-201ENST00000263630 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.8■□□□□ 0.449e-7■■■□□ 15.8
CCDC88A-201ENST00000263630 P3H3Q8IVL6 736 aa17.8■□□□□ 0.44
CCDC88A-201ENST00000263630 SYAP1Q96A49 352 aaPredicted RBP17.78■□□□□ 0.44
CCDC88A-201ENST00000263630 PPP1R15AO75807 674 aaPredicted RBP17.77■□□□□ 0.44
CCDC88A-201ENST00000263630 MAPK8IP3Q9UPT6 1336 aa17.76■□□□□ 0.43
CCDC88A-201ENST00000263630 CEP89Q96ST8 783 aa17.76■□□□□ 0.43
CCDC88A-201ENST00000263630 KDM2AQ9Y2K7 1162 aa17.75■□□□□ 0.43
CCDC88A-201ENST00000263630 LAS1LQ9Y4W2 734 aaKnown RBP17.75■□□□□ 0.43
CCDC88A-201ENST00000263630 ISY1Q9ULR0 285 aaKnown RBP17.72■□□□□ 0.43
CCDC88A-201ENST00000263630 KNSTRNQ9Y448 316 aa17.72■□□□□ 0.43
CCDC88A-201ENST00000263630 TSPY4P0CV99 314 aa17.72■□□□□ 0.43
CCDC88A-201ENST00000263630 TSPY10P0CW01 314 aa17.72■□□□□ 0.43
CCDC88A-201ENST00000263630 NUDCQ9Y266 331 aa17.71■□□□□ 0.43
CCDC88A-201ENST00000263630 GBP4Q96PP9 640 aa17.7■□□□□ 0.42
CCDC88A-201ENST00000263630 PLEKHG5O94827 1062 aa17.67■□□□□ 0.42
CCDC88A-201ENST00000263630 KIAA1211Q6ZU35 1233 aa17.66■□□□□ 0.42
CCDC88A-201ENST00000263630 CSPP1Q1MSJ5 1256 aa17.65■□□□□ 0.42
CCDC88A-201ENST00000263630 KRI1Q8N9T8 703 aaKnown RBP17.64■□□□□ 0.41
CCDC88A-201ENST00000263630 TPM3P06753 285 aa17.64■□□□□ 0.41
CCDC88A-201ENST00000263630 RGS3P49796 1198 aa17.63■□□□□ 0.41
CCDC88A-201ENST00000263630 RRP12Q5JTH9 1297 aaKnown RBP17.63■□□□□ 0.41
CCDC88A-201ENST00000263630 ARID4BQ4LE39 1312 aaPredicted RBP17.62■□□□□ 0.41
CCDC88A-201ENST00000263630 GPS2Q13227 327 aa17.61■□□□□ 0.41
CCDC88A-201ENST00000263630 PHF14O94880 888 aa17.61■□□□□ 0.41
CCDC88A-201ENST00000263630 CCDC70Q6NSX1 233 aa17.61■□□□□ 0.41
CCDC88A-201ENST00000263630 PPP4R2Q9NY27 417 aa17.61■□□□□ 0.41
CCDC88A-201ENST00000263630 TMX4Q9H1E5 349 aaPredicted RBP17.58■□□□□ 0.41
CCDC88A-201ENST00000263630 FRAT1Q92837 279 aaPredicted RBP17.57■□□□□ 0.4
CCDC88A-201ENST00000263630 TSR1Q2NL82 804 aaKnown RBP17.55■□□□□ 0.4
CCDC88A-201ENST00000263630 CSRNP3Q8WYN3 585 aa17.54■□□□□ 0.4
CCDC88A-201ENST00000263630 ARID3AQ99856 593 aa17.54■□□□□ 0.4
CCDC88A-201ENST00000263630 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
CCDC88A-201ENST00000263630 SUPT16HQ9Y5B9 1047 aaKnown RBP17.53■□□□□ 0.4
CCDC88A-201ENST00000263630 PDE4CQ08493 712 aa17.53■□□□□ 0.4
CCDC88A-201ENST00000263630 CHIC2Q9UKJ5 165 aa17.53■□□□□ 0.4
CCDC88A-201ENST00000263630 RASSF8Q8NHQ8 419 aa17.5■□□□□ 0.39
CCDC88A-201ENST00000263630 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
CCDC88A-201ENST00000263630 GPATCH3Q96I76 525 aa17.5■□□□□ 0.39
CCDC88A-201ENST00000263630 TPM2P07951 284 aa17.48■□□□□ 0.39
CCDC88A-201ENST00000263630 HMMRO75330 724 aa17.48■□□□□ 0.39
CCDC88A-201ENST00000263630 GOLGA6L3A6NEY3 463 aa17.47■□□□□ 0.39
CCDC88A-201ENST00000263630 NEUROD2Q15784 382 aa17.47■□□□□ 0.39
CCDC88A-201ENST00000263630 HSP90AA2PQ14568 343 aaPredicted RBP17.46■□□□□ 0.39
CCDC88A-201ENST00000263630 HSP90B1P14625 803 aaKnown RBP17.46■□□□□ 0.39
CCDC88A-201ENST00000263630 TPM1P09493 284 aa17.46■□□□□ 0.39
CCDC88A-201ENST00000263630 TEX35Q5T0J7 233 aa17.46■□□□□ 0.38
CCDC88A-201ENST00000263630 KIF3AQ9Y496 699 aa17.45■□□□□ 0.38
CCDC88A-201ENST00000263630 PATL2C9JE40 543 aaKnown RBP17.45■□□□□ 0.38
CCDC88A-201ENST00000263630 MIER1Q8N108 512 aa17.45■□□□□ 0.38
CCDC88A-201ENST00000263630 CHMP4AQ9BY43 222 aa17.45■□□□□ 0.38
CCDC88A-201ENST00000263630 LMOD2Q6P5Q4 547 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms