RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CUX1P39880 1505 aa13.25□□□□□ -0.29
MSH4-201ENST00000263187 KIF27Q86VH2 1401 aa13.25□□□□□ -0.29
MSH4-201ENST00000263187 SIN3AQ96ST3 1273 aa13.24□□□□□ -0.29
MSH4-201ENST00000263187 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
MSH4-201ENST00000263187 CCNB3Q8WWL7 1395 aa13.22□□□□□ -0.29
MSH4-201ENST00000263187 BCANQ96GW7 911 aa13.2□□□□□ -0.3
MSH4-201ENST00000263187 CUX2O14529 1486 aa13.2□□□□□ -0.3
MSH4-201ENST00000263187 ARHGAP35Q9NRY4 1499 aa13.19□□□□□ -0.3
MSH4-201ENST00000263187 DDX10Q13206 875 aaKnown RBP13.19□□□□□ -0.3
MSH4-201ENST00000263187 WDR97A6NE52 1622 aa13.18□□□□□ -0.3
MSH4-201ENST00000263187 RAB3GAP2Q9H2M9 1393 aa13.17□□□□□ -0.3
MSH4-201ENST00000263187 SUPT16HQ9Y5B9 1047 aaKnown RBP13.17□□□□□ -0.3
MSH4-201ENST00000263187 TARBP1Q13395 1621 aaKnown RBP13.16□□□□□ -0.3
MSH4-201ENST00000263187 ERICH3Q5RHP9 1530 aa13.15□□□□□ -0.3
MSH4-201ENST00000263187 IGF1RP08069 1367 aa13.14□□□□□ -0.31
MSH4-201ENST00000263187 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
MSH4-201ENST00000263187 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
MSH4-201ENST00000263187 RRBP1Q9P2E9 1410 aaKnown RBP13.13□□□□□ -0.31
MSH4-201ENST00000263187 CARMIL1Q5VZK9 1371 aa13.12□□□□□ -0.31
MSH4-201ENST00000263187 FGD5Q6ZNL6 1462 aa13.11□□□□□ -0.31
MSH4-201ENST00000263187 PHLDB1Q86UU1 1377 aa13.1□□□□□ -0.31
MSH4-201ENST00000263187 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
MSH4-201ENST00000263187 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
MSH4-201ENST00000263187 FHOD3Q2V2M9 1422 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ARID3CA6NKF2 412 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 SETD5Q9C0A6 1442 aa13.04□□□□□ -0.32
MSH4-201ENST00000263187 RAD54L2Q9Y4B4 1467 aa13.02□□□□□ -0.32
MSH4-201ENST00000263187 FKBP8Q14318 412 aa13.02□□□□□ -0.32
MSH4-201ENST00000263187 EIF4G3O43432 1585 aaKnown RBP13.02□□□□□ -0.32
MSH4-201ENST00000263187 MAPKBP1O60336 1514 aa13.01□□□□□ -0.33
MSH4-201ENST00000263187 LRRC9Q6ZRR7 1453 aa13□□□□□ -0.33
MSH4-201ENST00000263187 PBRM1Q86U86 1689 aa13□□□□□ -0.33
MSH4-201ENST00000263187 ZNF608Q9ULD9 1512 aaPredicted RBP12.98□□□□□ -0.33
MSH4-201ENST00000263187 TIAM1Q13009 1591 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 TSHZ2Q9NRE2 1034 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 CHIC2Q9UKJ5 165 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 PPP1R15AO75807 674 aaPredicted RBP12.93□□□□□ -0.34
MSH4-201ENST00000263187 CNGB1Q14028 1251 aaPredicted RBP12.93□□□□□ -0.34
MSH4-201ENST00000263187 RRP7BPQ9NSQ0 103 aa12.93□□□□□ -0.34
MSH4-201ENST00000263187 ANP32CO43423 234 aa12.92□□□□□ -0.34
MSH4-201ENST00000263187 TDRD9Q8NDG6 1382 aaKnown RBP12.92□□□□□ -0.34
MSH4-201ENST00000263187 PCF11O94913 1555 aaKnown RBP12.92□□□□□ -0.34
MSH4-201ENST00000263187 IRX6P78412 446 aaPredicted RBP12.91□□□□□ -0.34
MSH4-201ENST00000263187 FHAD1B1AJZ9 1412 aa12.91□□□□□ -0.34
MSH4-201ENST00000263187 MTUS2Q5JR59 1369 aa12.9□□□□□ -0.34
MSH4-201ENST00000263187 TONSLQ96HA7 1378 aa12.9□□□□□ -0.34
MSH4-201ENST00000263187 AQRO60306 1485 aaKnown RBP eCLIP12.89□□□□□ -0.35
MSH4-201ENST00000263187 GAPVD1Q14C86 1478 aa12.89□□□□□ -0.35
MSH4-201ENST00000263187 FOXD1Q16676 465 aa12.88□□□□□ -0.35
MSH4-201ENST00000263187 NEFLP07196 543 aa12.87□□□□□ -0.35
MSH4-201ENST00000263187 GRIN2BQ13224 1484 aa12.87□□□□□ -0.35
MSH4-201ENST00000263187 ADAMTS12P58397 1594 aa12.86□□□□□ -0.35
MSH4-201ENST00000263187 CUL7Q14999 1698 aa12.86□□□□□ -0.35
MSH4-201ENST00000263187 PTPRKQ15262 1439 aa12.85□□□□□ -0.35
MSH4-201ENST00000263187 MAGI1Q96QZ7 1491 aaPredicted RBP12.85□□□□□ -0.35
MSH4-201ENST00000263187 MYT1Q01538 1121 aa12.84□□□□□ -0.35
MSH4-201ENST00000263187 CHD1O14646 1710 aa12.83□□□□□ -0.36
MSH4-201ENST00000263187 DNAJC5Q9H3Z4 198 aa12.83□□□□□ -0.36
MSH4-201ENST00000263187 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 HNRNPUQ00839 825 aaKnown RBP eCLIP12.82□□□□□ -0.36
MSH4-201ENST00000263187 SNAPC4Q5SXM2 1469 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 FGD6Q6ZV73 1430 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 CCDC18Q5T9S5 1454 aa12.8□□□□□ -0.36
MSH4-201ENST00000263187 CASKIN1Q8WXD9 1431 aa12.8□□□□□ -0.36
MSH4-201ENST00000263187 MAP3K1Q13233 1512 aa12.79□□□□□ -0.36
MSH4-201ENST00000263187 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
MSH4-201ENST00000263187 POLR3GLQ9BT43 218 aa12.77□□□□□ -0.37
MSH4-201ENST00000263187 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
MSH4-201ENST00000263187 HSPA5P11021 654 aaKnown RBP12.77□□□□□ -0.37
MSH4-201ENST00000263187 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
MSH4-201ENST00000263187 TIMELESSQ9UNS1 1208 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 CCER2I3L3R5 266 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 RBM19Q9Y4C8 960 aaKnown RBP12.74□□□□□ -0.37
MSH4-201ENST00000263187 NCOA2Q15596 1464 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 NAIPQ13075 1403 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 WASHC2AQ641Q2 1341 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 ZNF326Q5BKZ1 582 aaKnown RBP12.72□□□□□ -0.37
MSH4-201ENST00000263187 ANP32EQ9BTT0 268 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 CEP170Q5SW79 1584 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 L3MBTL2Q969R5 705 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 UACAQ9BZF9 1416 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 C11orf95C9JLR9 678 aaPredicted RBP12.71□□□□□ -0.38
MSH4-201ENST00000263187 CLASP1Q7Z460 1538 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 HFM1A2PYH4 1435 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 MYOM3Q5VTT5 1437 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 ZNF644Q9H582 1327 aaPredicted RBP12.7□□□□□ -0.38
MSH4-201ENST00000263187 CTTNBP2Q8WZ74 1663 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 MPHOSPH9Q99550 1183 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 NUP160Q12769 1436 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 EIF4G2P78344 907 aaKnown RBP eCLIP12.68□□□□□ -0.38
MSH4-201ENST00000263187 EFCAB5A4FU69 1503 aa12.67□□□□□ -0.38
MSH4-201ENST00000263187 PTPN23Q9H3S7 1636 aa12.67□□□□□ -0.38
MSH4-201ENST00000263187 ZNF777Q9ULD5 760 aaPredicted RBP12.67□□□□□ -0.38
MSH4-201ENST00000263187 SHROOM2Q13796 1616 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 569.8 ms