RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CUX1P39880 1505 aa13.25□□□□□ -0.29
MSH4-201ENST00000263187 KIF27Q86VH2 1401 aa13.25□□□□□ -0.29
MSH4-201ENST00000263187 SIN3AQ96ST3 1273 aa13.24□□□□□ -0.29
MSH4-201ENST00000263187 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
MSH4-201ENST00000263187 CCNB3Q8WWL7 1395 aa13.22□□□□□ -0.29
MSH4-201ENST00000263187 BCANQ96GW7 911 aa13.2□□□□□ -0.3
MSH4-201ENST00000263187 CUX2O14529 1486 aa13.2□□□□□ -0.3
MSH4-201ENST00000263187 ARHGAP35Q9NRY4 1499 aa13.19□□□□□ -0.3
MSH4-201ENST00000263187 DDX10Q13206 875 aaKnown RBP13.19□□□□□ -0.3
MSH4-201ENST00000263187 WDR97A6NE52 1622 aa13.18□□□□□ -0.3
MSH4-201ENST00000263187 RAB3GAP2Q9H2M9 1393 aa13.17□□□□□ -0.3
MSH4-201ENST00000263187 SUPT16HQ9Y5B9 1047 aaKnown RBP13.17□□□□□ -0.3
MSH4-201ENST00000263187 TARBP1Q13395 1621 aaKnown RBP13.16□□□□□ -0.3
MSH4-201ENST00000263187 ERICH3Q5RHP9 1530 aa13.15□□□□□ -0.3
MSH4-201ENST00000263187 IGF1RP08069 1367 aa13.14□□□□□ -0.31
MSH4-201ENST00000263187 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
MSH4-201ENST00000263187 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
MSH4-201ENST00000263187 RRBP1Q9P2E9 1410 aaKnown RBP13.13□□□□□ -0.31
MSH4-201ENST00000263187 CARMIL1Q5VZK9 1371 aa13.12□□□□□ -0.31
MSH4-201ENST00000263187 FGD5Q6ZNL6 1462 aa13.11□□□□□ -0.31
MSH4-201ENST00000263187 PHLDB1Q86UU1 1377 aa13.1□□□□□ -0.31
MSH4-201ENST00000263187 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
MSH4-201ENST00000263187 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
MSH4-201ENST00000263187 FHOD3Q2V2M9 1422 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ARID3CA6NKF2 412 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
MSH4-201ENST00000263187 SETD5Q9C0A6 1442 aa13.04□□□□□ -0.32
MSH4-201ENST00000263187 RAD54L2Q9Y4B4 1467 aa13.02□□□□□ -0.32
MSH4-201ENST00000263187 FKBP8Q14318 412 aa13.02□□□□□ -0.32
MSH4-201ENST00000263187 EIF4G3O43432 1585 aaKnown RBP13.02□□□□□ -0.32
MSH4-201ENST00000263187 MAPKBP1O60336 1514 aa13.01□□□□□ -0.33
MSH4-201ENST00000263187 LRRC9Q6ZRR7 1453 aa13□□□□□ -0.33
MSH4-201ENST00000263187 PBRM1Q86U86 1689 aa13□□□□□ -0.33
MSH4-201ENST00000263187 ZNF608Q9ULD9 1512 aaPredicted RBP12.98□□□□□ -0.33
MSH4-201ENST00000263187 TIAM1Q13009 1591 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 TSHZ2Q9NRE2 1034 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 CHIC2Q9UKJ5 165 aa12.98□□□□□ -0.33
MSH4-201ENST00000263187 PPP1R15AO75807 674 aaPredicted RBP12.93□□□□□ -0.34
MSH4-201ENST00000263187 CNGB1Q14028 1251 aaPredicted RBP12.93□□□□□ -0.34
MSH4-201ENST00000263187 RRP7BPQ9NSQ0 103 aa12.93□□□□□ -0.34
MSH4-201ENST00000263187 ANP32CO43423 234 aa12.92□□□□□ -0.34
MSH4-201ENST00000263187 TDRD9Q8NDG6 1382 aaKnown RBP12.92□□□□□ -0.34
MSH4-201ENST00000263187 PCF11O94913 1555 aaKnown RBP12.92□□□□□ -0.34
MSH4-201ENST00000263187 IRX6P78412 446 aaPredicted RBP12.91□□□□□ -0.34
MSH4-201ENST00000263187 FHAD1B1AJZ9 1412 aa12.91□□□□□ -0.34
MSH4-201ENST00000263187 MTUS2Q5JR59 1369 aa12.9□□□□□ -0.34
MSH4-201ENST00000263187 TONSLQ96HA7 1378 aa12.9□□□□□ -0.34
MSH4-201ENST00000263187 AQRO60306 1485 aaKnown RBP eCLIP12.89□□□□□ -0.35
MSH4-201ENST00000263187 GAPVD1Q14C86 1478 aa12.89□□□□□ -0.35
MSH4-201ENST00000263187 FOXD1Q16676 465 aa12.88□□□□□ -0.35
MSH4-201ENST00000263187 NEFLP07196 543 aa12.87□□□□□ -0.35
MSH4-201ENST00000263187 GRIN2BQ13224 1484 aa12.87□□□□□ -0.35
MSH4-201ENST00000263187 ADAMTS12P58397 1594 aa12.86□□□□□ -0.35
MSH4-201ENST00000263187 CUL7Q14999 1698 aa12.86□□□□□ -0.35
MSH4-201ENST00000263187 PTPRKQ15262 1439 aa12.85□□□□□ -0.35
MSH4-201ENST00000263187 MAGI1Q96QZ7 1491 aaPredicted RBP12.85□□□□□ -0.35
MSH4-201ENST00000263187 MYT1Q01538 1121 aa12.84□□□□□ -0.35
MSH4-201ENST00000263187 CHD1O14646 1710 aa12.83□□□□□ -0.36
MSH4-201ENST00000263187 DNAJC5Q9H3Z4 198 aa12.83□□□□□ -0.36
MSH4-201ENST00000263187 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 HNRNPUQ00839 825 aaKnown RBP eCLIP12.82□□□□□ -0.36
MSH4-201ENST00000263187 SNAPC4Q5SXM2 1469 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 FGD6Q6ZV73 1430 aa12.82□□□□□ -0.36
MSH4-201ENST00000263187 CCDC18Q5T9S5 1454 aa12.8□□□□□ -0.36
MSH4-201ENST00000263187 CASKIN1Q8WXD9 1431 aa12.8□□□□□ -0.36
MSH4-201ENST00000263187 MAP3K1Q13233 1512 aa12.79□□□□□ -0.36
MSH4-201ENST00000263187 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
MSH4-201ENST00000263187 POLR3GLQ9BT43 218 aa12.77□□□□□ -0.37
MSH4-201ENST00000263187 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
MSH4-201ENST00000263187 HSPA5P11021 654 aaKnown RBP12.77□□□□□ -0.37
MSH4-201ENST00000263187 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
MSH4-201ENST00000263187 TIMELESSQ9UNS1 1208 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
MSH4-201ENST00000263187 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 CCER2I3L3R5 266 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 RBM19Q9Y4C8 960 aaKnown RBP12.74□□□□□ -0.37
MSH4-201ENST00000263187 NCOA2Q15596 1464 aa12.74□□□□□ -0.37
MSH4-201ENST00000263187 NAIPQ13075 1403 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 WASHC2AQ641Q2 1341 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 ZNF326Q5BKZ1 582 aaKnown RBP12.72□□□□□ -0.37
MSH4-201ENST00000263187 ANP32EQ9BTT0 268 aa12.72□□□□□ -0.37
MSH4-201ENST00000263187 CEP170Q5SW79 1584 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 L3MBTL2Q969R5 705 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 UACAQ9BZF9 1416 aa12.71□□□□□ -0.37
MSH4-201ENST00000263187 C11orf95C9JLR9 678 aaPredicted RBP12.71□□□□□ -0.38
MSH4-201ENST00000263187 CLASP1Q7Z460 1538 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 HFM1A2PYH4 1435 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 MYOM3Q5VTT5 1437 aa12.7□□□□□ -0.38
MSH4-201ENST00000263187 ZNF644Q9H582 1327 aaPredicted RBP12.7□□□□□ -0.38
MSH4-201ENST00000263187 CTTNBP2Q8WZ74 1663 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 MPHOSPH9Q99550 1183 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 NUP160Q12769 1436 aa12.69□□□□□ -0.38
MSH4-201ENST00000263187 EIF4G2P78344 907 aaKnown RBP eCLIP12.68□□□□□ -0.38
MSH4-201ENST00000263187 EFCAB5A4FU69 1503 aa12.67□□□□□ -0.38
MSH4-201ENST00000263187 PTPN23Q9H3S7 1636 aa12.67□□□□□ -0.38
MSH4-201ENST00000263187 ZNF777Q9ULD5 760 aaPredicted RBP12.67□□□□□ -0.38
MSH4-201ENST00000263187 SHROOM2Q13796 1616 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms