RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FHOD3Q2V2M9 1422 aa30.83■■■□□ 2.53
TRIM28-201ENST00000253024 NESP48681 1621 aa30.81■■■□□ 2.52
TRIM28-201ENST00000253024 ARID3CA6NKF2 412 aa30.81■■■□□ 2.52
TRIM28-201ENST00000253024 DNAJC5BQ9UF47 199 aa30.81■■■□□ 2.52
TRIM28-201ENST00000253024 DDX10Q13206 875 aaKnown RBP30.79■■■□□ 2.52
TRIM28-201ENST00000253024 CLSPNQ9HAW4 1339 aa30.76■■■□□ 2.51
TRIM28-201ENST00000253024 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
TRIM28-201ENST00000253024 CC2D2AQ9P2K1 1620 aa30.67■■■□□ 2.5
TRIM28-201ENST00000253024 TDRD9Q8NDG6 1382 aaKnown RBP30.65■■■□□ 2.5
TRIM28-201ENST00000253024 LRRC9Q6ZRR7 1453 aa30.65■■■□□ 2.5
TRIM28-201ENST00000253024 BCANQ96GW7 911 aa30.64■■■□□ 2.5
TRIM28-201ENST00000253024 TIAM1Q13009 1591 aa30.63■■■□□ 2.49
TRIM28-201ENST00000253024 SETD5Q9C0A6 1442 aa30.63■■■□□ 2.49
TRIM28-201ENST00000253024 MAPKBP1O60336 1514 aa30.56■■■□□ 2.48
TRIM28-201ENST00000253024 PCF11O94913 1555 aaKnown RBP30.54■■■□□ 2.48
TRIM28-201ENST00000253024 CHIC2Q9UKJ5 165 aa30.54■■■□□ 2.48
TRIM28-201ENST00000253024 SUPT16HQ9Y5B9 1047 aaKnown RBP30.54■■■□□ 2.48
TRIM28-201ENST00000253024 POLA1P09884 1462 aaPredicted RBP30.51■■■□□ 2.47
TRIM28-201ENST00000253024 FHAD1B1AJZ9 1412 aa30.49■■■□□ 2.47
TRIM28-201ENST00000253024 WDR97A6NE52 1622 aa30.47■■■□□ 2.47
TRIM28-201ENST00000253024 TRIM52Q96A61 297 aa30.45■■■□□ 2.46
TRIM28-201ENST00000253024 MTUS2Q5JR59 1369 aa30.45■■■□□ 2.46
TRIM28-201ENST00000253024 TOPBP1Q92547 1522 aa30.44■■■□□ 2.46
TRIM28-201ENST00000253024 RRP7BPQ9NSQ0 103 aa30.42■■■□□ 2.46
TRIM28-201ENST00000253024 PRDM2Q13029 1718 aa30.34■■■□□ 2.45
TRIM28-201ENST00000253024 PPP1R15AO75807 674 aaPredicted RBP30.3■■■□□ 2.44
TRIM28-201ENST00000253024 TONSLQ96HA7 1378 aa30.27■■■□□ 2.44
TRIM28-201ENST00000253024 DNMBPQ6XZF7 1577 aa30.27■■■□□ 2.44
TRIM28-201ENST00000253024 ABCA10Q8WWZ4 1543 aa30.27■■■□□ 2.44
TRIM28-201ENST00000253024 FOXD1Q16676 465 aa30.27■■■□□ 2.44
TRIM28-201ENST00000253024 PTPRKQ15262 1439 aa30.26■■■□□ 2.44
TRIM28-201ENST00000253024 FKBP8Q14318 412 aa30.25■■■□□ 2.43
TRIM28-201ENST00000253024 CNGB1Q14028 1251 aaPredicted RBP30.24■■■□□ 2.43
TRIM28-201ENST00000253024 URB2Q14146 1524 aaKnown RBP30.24■■■□□ 2.43
TRIM28-201ENST00000253024 CASKIN1Q8WXD9 1431 aa30.23■■■□□ 2.43
TRIM28-201ENST00000253024 FGD6Q6ZV73 1430 aa30.22■■■□□ 2.43
TRIM28-201ENST00000253024 MAP3K1Q13233 1512 aa30.19■■■□□ 2.42
TRIM28-201ENST00000253024 FYCO1Q9BQS8 1478 aa30.17■■■□□ 2.42
TRIM28-201ENST00000253024 ANP32CO43423 234 aa30.17■■■□□ 2.42
TRIM28-201ENST00000253024 FMN1Q68DA7 1419 aa30.14■■■□□ 2.42
TRIM28-201ENST00000253024 GAPVD1Q14C86 1478 aa30.13■■■□□ 2.41
TRIM28-201ENST00000253024 CCDC18Q5T9S5 1454 aa30.13■■■□□ 2.41
TRIM28-201ENST00000253024 CFAP43Q8NDM7 1665 aa30.13■■■□□ 2.41
TRIM28-201ENST00000253024 AQRO60306 1485 aaKnown RBP eCLIP30.09■■■□□ 2.414e-10■■■■■ 36.7
TRIM28-201ENST00000253024 NCOA2Q15596 1464 aa30.07■■■□□ 2.4
TRIM28-201ENST00000253024 SNAPC4Q5SXM2 1469 aa30.05■■■□□ 2.4
TRIM28-201ENST00000253024 IRX6P78412 446 aaPredicted RBP30.04■■■□□ 2.4
TRIM28-201ENST00000253024 TSHZ2Q9NRE2 1034 aa30.03■■■□□ 2.4
TRIM28-201ENST00000253024 EFCAB5A4FU69 1503 aa30.01■■■□□ 2.39
TRIM28-201ENST00000253024 CTTNBP2Q8WZ74 1663 aa29.97■■■□□ 2.39
TRIM28-201ENST00000253024 NAIPQ13075 1403 aa29.97■■■□□ 2.39
TRIM28-201ENST00000253024 SENP3-EIF4A1A0A087X0R7 540 aa29.96■■■□□ 2.39
TRIM28-201ENST00000253024 MYOM3Q5VTT5 1437 aa29.96■■■□□ 2.39
TRIM28-201ENST00000253024 ZNF644Q9H582 1327 aaPredicted RBP29.95■■■□□ 2.39
TRIM28-201ENST00000253024 FBLN2P98095 1184 aa29.94■■■□□ 2.38
TRIM28-201ENST00000253024 CUL7Q14999 1698 aa29.94■■■□□ 2.38
TRIM28-201ENST00000253024 PDS5BQ9NTI5 1447 aa29.92■■■□□ 2.38
TRIM28-201ENST00000253024 HNRNPUQ00839 825 aaKnown RBP eCLIP29.92■■■□□ 2.38
TRIM28-201ENST00000253024 POLR3GLQ9BT43 218 aa29.92■■■□□ 2.38
TRIM28-201ENST00000253024 HSPA5P11021 654 aaKnown RBP29.91■■■□□ 2.38
TRIM28-201ENST00000253024 NEFLP07196 543 aa29.91■■■□□ 2.38
TRIM28-201ENST00000253024 HFM1A2PYH4 1435 aa29.91■■■□□ 2.38
TRIM28-201ENST00000253024 UACAQ9BZF9 1416 aa29.9■■■□□ 2.38
TRIM28-201ENST00000253024 MAGI3Q5TCQ9 1506 aa29.9■■■□□ 2.38
TRIM28-201ENST00000253024 CDK13Q14004 1512 aaKnown RBP29.89■■■□□ 2.38
TRIM28-201ENST00000253024 ZNF777Q9ULD5 760 aaPredicted RBP29.89■■■□□ 2.38
TRIM28-201ENST00000253024 LRRIQ1Q96JM4 1722 aa29.89■■■□□ 2.38
TRIM28-201ENST00000253024 TIMELESSQ9UNS1 1208 aa29.88■■■□□ 2.37
TRIM28-201ENST00000253024 ZNF326Q5BKZ1 582 aaKnown RBP29.87■■■□□ 2.37
TRIM28-201ENST00000253024 PTPN23Q9H3S7 1636 aa29.86■■■□□ 2.37
TRIM28-201ENST00000253024 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
TRIM28-201ENST00000253024 L3MBTL2Q969R5 705 aa29.84■■■□□ 2.37
TRIM28-201ENST00000253024 MPHOSPH9Q99550 1183 aa29.83■■■□□ 2.37
TRIM28-201ENST00000253024 CCDC184Q52MB2 194 aa29.82■■■□□ 2.36
TRIM28-201ENST00000253024 KIF21AQ7Z4S6 1674 aa29.81■■■□□ 2.36
TRIM28-201ENST00000253024 WASHC2AQ641Q2 1341 aa29.8■■■□□ 2.36
TRIM28-201ENST00000253024 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.79■■■□□ 2.365e-11■□□□□ 10
TRIM28-201ENST00000253024 LAMC3Q9Y6N6 1575 aa29.79■■■□□ 2.36
TRIM28-201ENST00000253024 ABCA5Q8WWZ7 1642 aa29.78■■■□□ 2.36
TRIM28-201ENST00000253024 C11orf95C9JLR9 678 aaPredicted RBP29.77■■■□□ 2.36
TRIM28-201ENST00000253024 FAM9BQ8IZU0 186 aa29.77■■■□□ 2.36
TRIM28-201ENST00000253024 KDM6BO15054 1643 aa29.74■■■□□ 2.35
TRIM28-201ENST00000253024 CCER2I3L3R5 266 aa29.74■■■□□ 2.35
TRIM28-201ENST00000253024 SAMD9Q5K651 1589 aa29.73■■■□□ 2.35
TRIM28-201ENST00000253024 MYT1Q01538 1121 aa29.72■■■□□ 2.35
TRIM28-201ENST00000253024 SLC4A1APQ9BWU0 796 aaKnown RBP29.72■■■□□ 2.35
TRIM28-201ENST00000253024 SUPT6HQ7KZ85 1726 aaKnown RBP29.72■■■□□ 2.35
TRIM28-201ENST00000253024 EIF4G2P78344 907 aaKnown RBP eCLIP29.71■■■□□ 2.35
TRIM28-201ENST00000253024 ZNF608Q9ULD9 1512 aaPredicted RBP29.71■■■□□ 2.35
TRIM28-201ENST00000253024 EPRSP07814 1512 aaKnown RBP29.68■■■□□ 2.34
TRIM28-201ENST00000253024 EHBP1L1Q8N3D4 1523 aa29.68■■■□□ 2.34
TRIM28-201ENST00000253024 NBPF8Q3BBV2 869 aa29.67■■■□□ 2.34
TRIM28-201ENST00000253024 UGGT2Q9NYU1 1516 aa29.65■■■□□ 2.34
TRIM28-201ENST00000253024 THOC2Q8NI27 1593 aaKnown RBP29.65■■■□□ 2.34
TRIM28-201ENST00000253024 DENND4BO75064 1496 aaPredicted RBP29.63■■■□□ 2.33
TRIM28-201ENST00000253024 TARBP1Q13395 1621 aaKnown RBP29.58■■■□□ 2.33
TRIM28-201ENST00000253024 IQGAP2Q13576 1575 aa29.56■■■□□ 2.32
TRIM28-201ENST00000253024 CHMP7Q8WUX9 453 aaPredicted RBP29.55■■■□□ 2.32
TRIM28-201ENST00000253024 MRS2Q9HD23 443 aa29.55■■■□□ 2.32
TRIM28-201ENST00000253024 KDM5BQ9UGL1 1544 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms