RNA–Protein interactions for RNA: ENST00000252699.6

ACTN4-201, Transcript of actinin alpha 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ACTN4, Length 4,963 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-201ENST00000252699 GTF3C3Q9Y5Q9 886 aa23.53■■□□□ 1.36
ACTN4-201ENST00000252699 VPS8Q8N3P4 1428 aa23.51■■□□□ 1.35
ACTN4-201ENST00000252699 KDM2AQ9Y2K7 1162 aa23.51■■□□□ 1.35
ACTN4-201ENST00000252699 PLPPR3Q6T4P5 718 aa23.44■■□□□ 1.34
ACTN4-201ENST00000252699 CCNB3Q8WWL7 1395 aa23.44■■□□□ 1.34
ACTN4-201ENST00000252699 DAXXQ9UER7 740 aaPredicted RBP23.44■■□□□ 1.34
ACTN4-201ENST00000252699 HIRIP3Q9BW71 556 aaPredicted RBP23.41■■□□□ 1.34
ACTN4-201ENST00000252699 KANK4Q5T7N3 995 aaPredicted RBP23.4■■□□□ 1.34
ACTN4-201ENST00000252699 FANCD2Q9BXW9 1451 aa23.39■■□□□ 1.33
ACTN4-201ENST00000252699 ACIN1Q9UKV3 1341 aaKnown RBP23.37■■□□□ 1.33
ACTN4-201ENST00000252699 RUSC2Q8N2Y8 1516 aa23.36■■□□□ 1.33
ACTN4-201ENST00000252699 NCAPD3P42695 1498 aa23.35■■□□□ 1.33
ACTN4-201ENST00000252699 CLSPNQ9HAW4 1339 aa23.35■■□□□ 1.33
ACTN4-201ENST00000252699 RAPGEF2Q9Y4G8 1499 aa23.34■■□□□ 1.33
ACTN4-201ENST00000252699 EIF4G2P78344 907 aaKnown RBP eCLIP23.32■■□□□ 1.32
ACTN4-201ENST00000252699 NEFMP07197 916 aa23.3■■□□□ 1.32
ACTN4-201ENST00000252699 RGL3Q3MIN7 710 aa23.29■■□□□ 1.32
ACTN4-201ENST00000252699 CARMIL2Q6F5E8 1435 aa23.28■■□□□ 1.32
ACTN4-201ENST00000252699 SIN3AQ96ST3 1273 aa23.27■■□□□ 1.32
ACTN4-201ENST00000252699 FMN1Q68DA7 1419 aa23.27■■□□□ 1.32
ACTN4-201ENST00000252699 FAM9BQ8IZU0 186 aa23.26■■□□□ 1.31
ACTN4-201ENST00000252699 HNRNPUQ00839 825 aaKnown RBP eCLIP23.25■■□□□ 1.312e-6■■■■□ 21.2
ACTN4-201ENST00000252699 MIER1Q8N108 512 aa23.24■■□□□ 1.31
ACTN4-201ENST00000252699 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
ACTN4-201ENST00000252699 FHOD3Q2V2M9 1422 aa23.2■■□□□ 1.3
ACTN4-201ENST00000252699 TMC1Q8TDI8 760 aa23.19■■□□□ 1.3
ACTN4-201ENST00000252699 CANXP27824 592 aaKnown RBP23.18■■□□□ 1.3
ACTN4-201ENST00000252699 SLC24A1O60721 1099 aa23.15■■□□□ 1.3
ACTN4-201ENST00000252699 SENP3Q9H4L4 574 aaPredicted RBP23.14■■□□□ 1.29
ACTN4-201ENST00000252699 MRS2Q9HD23 443 aa23.14■■□□□ 1.29
ACTN4-201ENST00000252699 FGD5Q6ZNL6 1462 aa23.14■■□□□ 1.29
ACTN4-201ENST00000252699 JPH4Q96JJ6 628 aa23.13■■□□□ 1.29
ACTN4-201ENST00000252699 SALL2Q9Y467 1007 aaPredicted RBP23.11■■□□□ 1.29
ACTN4-201ENST00000252699 IGF1RP08069 1367 aa23.11■■□□□ 1.29
ACTN4-201ENST00000252699 SETD5Q9C0A6 1442 aa23.1■■□□□ 1.29
ACTN4-201ENST00000252699 RAD54L2Q9Y4B4 1467 aa23.07■■□□□ 1.28
ACTN4-201ENST00000252699 PPP1R15AO75807 674 aaPredicted RBP23.06■■□□□ 1.28
ACTN4-201ENST00000252699 CARD11Q9BXL7 1154 aa23.06■■□□□ 1.28
ACTN4-201ENST00000252699 ARID4BQ4LE39 1312 aaPredicted RBP23.05■■□□□ 1.28
ACTN4-201ENST00000252699 FKBP8Q14318 412 aa23.02■■□□□ 1.28
ACTN4-201ENST00000252699 ZBTB47Q9UFB7 747 aaPredicted RBP23.01■■□□□ 1.27
ACTN4-201ENST00000252699 GAPVD1Q14C86 1478 aa23.01■■□□□ 1.27
ACTN4-201ENST00000252699 CFTRP13569 1480 aa23■■□□□ 1.27
ACTN4-201ENST00000252699 RAB3GAP2Q9H2M9 1393 aa22.98■■□□□ 1.27
ACTN4-201ENST00000252699 WDR43Q15061 677 aaKnown RBP eCLIP22.98■■□□□ 1.273e-7■□□□□ 10.2
ACTN4-201ENST00000252699 TIMELESSQ9UNS1 1208 aa22.98■■□□□ 1.27
ACTN4-201ENST00000252699 EFCAB2Q5VUJ9 269 aa22.97■■□□□ 1.27
ACTN4-201ENST00000252699 BCL11AQ9H165 835 aa22.94■■□□□ 1.26
ACTN4-201ENST00000252699 PKD2Q13563 968 aa22.93■■□□□ 1.26
ACTN4-201ENST00000252699 FOXD1Q16676 465 aa22.92■■□□□ 1.26
ACTN4-201ENST00000252699 DCAF11Q8TEB1 546 aa22.92■■□□□ 1.26
ACTN4-201ENST00000252699 BICRAQ9NZM4 1560 aa22.9■■□□□ 1.26
ACTN4-201ENST00000252699 CDCA8Q53HL2 280 aa22.89■■□□□ 1.26
ACTN4-201ENST00000252699 NESP48681 1621 aa22.89■■□□□ 1.26
ACTN4-201ENST00000252699 CC2D2AQ9P2K1 1620 aa22.89■■□□□ 1.26
ACTN4-201ENST00000252699 HMGXB3Q12766 1538 aa22.89■■□□□ 1.26
ACTN4-201ENST00000252699 KANK1Q14678 1352 aa22.88■■□□□ 1.25
ACTN4-201ENST00000252699 CCDC18Q5T9S5 1454 aa22.88■■□□□ 1.25
ACTN4-201ENST00000252699 MPHOSPH9Q99550 1183 aa22.87■■□□□ 1.25
ACTN4-201ENST00000252699 AQRO60306 1485 aaKnown RBP eCLIP22.86■■□□□ 1.256e-8■■■■■ 42.5
ACTN4-201ENST00000252699 ANKRD30AQ9BXX3 1397 aa22.86■■□□□ 1.25
ACTN4-201ENST00000252699 HNRNPMP52272 730 aaKnown RBP eCLIP22.86■■□□□ 1.255e-7■■■■□ 24.2
ACTN4-201ENST00000252699 GGT6Q6P531 493 aa22.85■■□□□ 1.25
ACTN4-201ENST00000252699 SYNJ1O43426 1573 aa22.85■■□□□ 1.25
ACTN4-201ENST00000252699 NUP155O75694 1391 aa22.84■■□□□ 1.25
ACTN4-201ENST00000252699 PTPRGP23470 1445 aa22.83■■□□□ 1.25
ACTN4-201ENST00000252699 KNSTRNQ9Y448 316 aa22.82■■□□□ 1.24
ACTN4-201ENST00000252699 MLECQ14165 292 aa22.81■■□□□ 1.24
ACTN4-201ENST00000252699 RTL5Q5HYW3 569 aaPredicted RBP22.81■■□□□ 1.24
ACTN4-201ENST00000252699 TRHP20396 242 aaPredicted RBP22.8■■□□□ 1.24
ACTN4-201ENST00000252699 MYT1Q01538 1121 aa22.79■■□□□ 1.24
ACTN4-201ENST00000252699 RSPH4AQ5TD94 716 aa22.77■■□□□ 1.24
ACTN4-201ENST00000252699 POGKQ9P215 609 aa22.74■■□□□ 1.23
ACTN4-201ENST00000252699 C14orf37Q86TY3 774 aa22.73■■□□□ 1.23
ACTN4-201ENST00000252699 SENP3-EIF4A1A0A087X0R7 540 aa22.72■■□□□ 1.23
ACTN4-201ENST00000252699 HSPA5P11021 654 aaKnown RBP22.71■■□□□ 1.23
ACTN4-201ENST00000252699 SPAG9O60271 1321 aaKnown RBP22.71■■□□□ 1.23
ACTN4-201ENST00000252699 KIF3BO15066 747 aa22.71■■□□□ 1.23
ACTN4-201ENST00000252699 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.71■■□□□ 1.23
ACTN4-201ENST00000252699 CCDC136Q96JN2 1154 aa22.7■■□□□ 1.22
ACTN4-201ENST00000252699 KIF21BO75037 1637 aa22.7■■□□□ 1.22
ACTN4-201ENST00000252699 CUX1P39880 1505 aa22.69■■□□□ 1.22
ACTN4-201ENST00000252699 IRX6P78412 446 aaPredicted RBP22.69■■□□□ 1.22
ACTN4-201ENST00000252699 GRIN2BQ13224 1484 aa22.68■■□□□ 1.22
ACTN4-201ENST00000252699 TOPBP1Q92547 1522 aa22.68■■□□□ 1.22
ACTN4-201ENST00000252699 TMF1P82094 1093 aa22.68■■□□□ 1.22
ACTN4-201ENST00000252699 OSCARQ8IYS5 282 aa22.68■■□□□ 1.22
ACTN4-201ENST00000252699 TOP2BQ02880 1626 aa22.66■■□□□ 1.22
ACTN4-201ENST00000252699 SCAF1Q9H7N4 1312 aaKnown RBP22.66■■□□□ 1.22
ACTN4-201ENST00000252699 PLEKHG5O94827 1062 aa22.66■■□□□ 1.22
ACTN4-201ENST00000252699 CFAP53Q96M91 514 aa22.66■■□□□ 1.22
ACTN4-201ENST00000252699 L3MBTL2Q969R5 705 aa22.65■■□□□ 1.22
ACTN4-201ENST00000252699 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.22
ACTN4-201ENST00000252699 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
ACTN4-201ENST00000252699 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
ACTN4-201ENST00000252699 DNAJC5BQ9UF47 199 aa22.64■■□□□ 1.21
ACTN4-201ENST00000252699 PRXQ9BXM0 1461 aa22.62■■□□□ 1.21
ACTN4-201ENST00000252699 DHX57Q6P158 1386 aaKnown RBP22.62■■□□□ 1.21
ACTN4-201ENST00000252699 CC2D1BQ5T0F9 858 aaKnown RBP22.61■■□□□ 1.21
ACTN4-201ENST00000252699 PPM1GO15355 546 aaPredicted RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms