RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 RRBP1Q9P2E9 1410 aaKnown RBP23.34■■□□□ 1.33
LRFN1-201ENST00000248668 MYT1Q01538 1121 aa23.33■■□□□ 1.32
LRFN1-201ENST00000248668 FAM50AQ14320 339 aaKnown RBP23.32■■□□□ 1.32
LRFN1-201ENST00000248668 KIF21AQ7Z4S6 1674 aa23.32■■□□□ 1.32
LRFN1-201ENST00000248668 TIAM1Q13009 1591 aa23.3■■□□□ 1.32
LRFN1-201ENST00000248668 GAPVD1Q14C86 1478 aa23.29■■□□□ 1.32
LRFN1-201ENST00000248668 DHX57Q6P158 1386 aaKnown RBP23.28■■□□□ 1.32
LRFN1-201ENST00000248668 FHAD1B1AJZ9 1412 aa23.28■■□□□ 1.32
LRFN1-201ENST00000248668 PCF11O94913 1555 aaKnown RBP23.27■■□□□ 1.32
LRFN1-201ENST00000248668 PHLDB1Q86UU1 1377 aa23.26■■□□□ 1.31
LRFN1-201ENST00000248668 LRRC9Q6ZRR7 1453 aa23.25■■□□□ 1.31
LRFN1-201ENST00000248668 CUL7Q14999 1698 aa23.23■■□□□ 1.31
LRFN1-201ENST00000248668 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
LRFN1-201ENST00000248668 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.3
LRFN1-201ENST00000248668 ABCA5Q8WWZ7 1642 aa23.17■■□□□ 1.3
LRFN1-201ENST00000248668 CTTNBP2Q8WZ74 1663 aa23.14■■□□□ 1.3
LRFN1-201ENST00000248668 RAB3GAP2Q9H2M9 1393 aa23.14■■□□□ 1.29
LRFN1-201ENST00000248668 MAP3K1Q13233 1512 aa23.13■■□□□ 1.29
LRFN1-201ENST00000248668 ARID3CA6NKF2 412 aa23.12■■□□□ 1.29
LRFN1-201ENST00000248668 EFCAB5A4FU69 1503 aa23.12■■□□□ 1.29
LRFN1-201ENST00000248668 CASKIN1Q8WXD9 1431 aa23.11■■□□□ 1.29
LRFN1-201ENST00000248668 FYCO1Q9BQS8 1478 aa23.09■■□□□ 1.29
LRFN1-201ENST00000248668 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
LRFN1-201ENST00000248668 YTHDC1Q96MU7 727 aaKnown RBP23.08■■□□□ 1.29
LRFN1-201ENST00000248668 FMN1Q68DA7 1419 aa23.08■■□□□ 1.29
LRFN1-201ENST00000248668 MTUS2Q5JR59 1369 aa23.06■■□□□ 1.28
LRFN1-201ENST00000248668 NEUROD1Q13562 356 aa23.06■■□□□ 1.28
LRFN1-201ENST00000248668 CFAP43Q8NDM7 1665 aa23.06■■□□□ 1.28
LRFN1-201ENST00000248668 CLSPNQ9HAW4 1339 aa23.05■■□□□ 1.28
LRFN1-201ENST00000248668 MIER1Q8N108 512 aa23.05■■□□□ 1.28
LRFN1-201ENST00000248668 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
LRFN1-201ENST00000248668 ZNF608Q9ULD9 1512 aaPredicted RBP23.01■■□□□ 1.27
LRFN1-201ENST00000248668 SNAPC4Q5SXM2 1469 aa23.01■■□□□ 1.27
LRFN1-201ENST00000248668 SETD5Q9C0A6 1442 aa23.01■■□□□ 1.27
LRFN1-201ENST00000248668 ACIN1Q9UKV3 1341 aaKnown RBP22.97■■□□□ 1.27
LRFN1-201ENST00000248668 SIN3AQ96ST3 1273 aa22.97■■□□□ 1.27
LRFN1-201ENST00000248668 SAMD9Q5K651 1589 aa22.95■■□□□ 1.26
LRFN1-201ENST00000248668 PBRM1Q86U86 1689 aa22.93■■□□□ 1.26
LRFN1-201ENST00000248668 GTF3C3Q9Y5Q9 886 aa22.93■■□□□ 1.26
LRFN1-201ENST00000248668 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
LRFN1-201ENST00000248668 CENPBP07199 599 aaPredicted RBP22.91■■□□□ 1.26
LRFN1-201ENST00000248668 GRIN2BQ13224 1484 aa22.91■■□□□ 1.26
LRFN1-201ENST00000248668 FGD6Q6ZV73 1430 aa22.91■■□□□ 1.26
LRFN1-201ENST00000248668 FBLN2P98095 1184 aa22.9■■□□□ 1.26
LRFN1-201ENST00000248668 MAPKBP1O60336 1514 aa22.89■■□□□ 1.25
LRFN1-201ENST00000248668 LRRIQ1Q96JM4 1722 aa22.87■■□□□ 1.25
LRFN1-201ENST00000248668 ADAMTS12P58397 1594 aa22.87■■□□□ 1.25
LRFN1-201ENST00000248668 NCOA2Q15596 1464 aa22.86■■□□□ 1.25
LRFN1-201ENST00000248668 IQGAP2Q13576 1575 aa22.85■■□□□ 1.25
LRFN1-201ENST00000248668 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
LRFN1-201ENST00000248668 CHIC2Q9UKJ5 165 aa22.84■■□□□ 1.25
LRFN1-201ENST00000248668 PTPRKQ15262 1439 aa22.82■■□□□ 1.24
LRFN1-201ENST00000248668 MAGI3Q5TCQ9 1506 aa22.8■■□□□ 1.24
LRFN1-201ENST00000248668 WDR62O43379 1518 aa22.79■■□□□ 1.24
LRFN1-201ENST00000248668 CDK13Q14004 1512 aaKnown RBP22.79■■□□□ 1.24
LRFN1-201ENST00000248668 MYOM3Q5VTT5 1437 aa22.79■■□□□ 1.24
LRFN1-201ENST00000248668 RRP7BPQ9NSQ0 103 aa22.78■■□□□ 1.24
LRFN1-201ENST00000248668 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
LRFN1-201ENST00000248668 HIRIP3Q9BW71 556 aaPredicted RBP22.73■■□□□ 1.23
LRFN1-201ENST00000248668 EHBP1L1Q8N3D4 1523 aa22.73■■□□□ 1.23
LRFN1-201ENST00000248668 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.73■■□□□ 1.23
LRFN1-201ENST00000248668 EPRSP07814 1512 aaKnown RBP22.73■■□□□ 1.23
LRFN1-201ENST00000248668 SUPT6HQ7KZ85 1726 aaKnown RBP22.72■■□□□ 1.23
LRFN1-201ENST00000248668 EIF4G3O43432 1585 aaKnown RBP22.72■■□□□ 1.23
LRFN1-201ENST00000248668 CCDC18Q5T9S5 1454 aa22.7■■□□□ 1.22
LRFN1-201ENST00000248668 THOC2Q8NI27 1593 aaKnown RBP22.69■■□□□ 1.22
LRFN1-201ENST00000248668 HECW1Q76N89 1606 aa22.68■■□□□ 1.22
LRFN1-201ENST00000248668 GRIN2AQ12879 1464 aa22.68■■□□□ 1.22
LRFN1-201ENST00000248668 KIAA0586Q9BVV6 1533 aa22.67■■□□□ 1.22
LRFN1-201ENST00000248668 UGGT2Q9NYU1 1516 aa22.67■■□□□ 1.22
LRFN1-201ENST00000248668 PTPN23Q9H3S7 1636 aa22.65■■□□□ 1.22
LRFN1-201ENST00000248668 TRIM52Q96A61 297 aa22.64■■□□□ 1.22
LRFN1-201ENST00000248668 HFM1A2PYH4 1435 aa22.64■■□□□ 1.22
LRFN1-201ENST00000248668 DISP1Q96F81 1524 aa22.64■■□□□ 1.21
LRFN1-201ENST00000248668 NAIPQ13075 1403 aa22.64■■□□□ 1.21
LRFN1-201ENST00000248668 ZNF644Q9H582 1327 aaPredicted RBP22.6■■□□□ 1.21
LRFN1-201ENST00000248668 KIAA0556O60303 1618 aa22.59■■□□□ 1.21
LRFN1-201ENST00000248668 DDX10Q13206 875 aaKnown RBP22.58■■□□□ 1.2
LRFN1-201ENST00000248668 ARHGEF11O15085 1522 aa22.57■■□□□ 1.2
LRFN1-201ENST00000248668 TONSLQ96HA7 1378 aa22.57■■□□□ 1.2
LRFN1-201ENST00000248668 PPP1R15AO75807 674 aaPredicted RBP22.56■■□□□ 1.2
LRFN1-201ENST00000248668 UACAQ9BZF9 1416 aa22.56■■□□□ 1.2
LRFN1-201ENST00000248668 JPH4Q96JJ6 628 aa22.55■■□□□ 1.2
LRFN1-201ENST00000248668 NUP153P49790 1475 aaKnown RBP22.55■■□□□ 1.2
LRFN1-201ENST00000248668 FOXD1Q16676 465 aa22.53■■□□□ 1.2
LRFN1-201ENST00000248668 PLB1Q6P1J6 1458 aa22.53■■□□□ 1.2
LRFN1-201ENST00000248668 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
LRFN1-201ENST00000248668 CEP170Q5SW79 1584 aa22.53■■□□□ 1.2
LRFN1-201ENST00000248668 SYNJ2O15056 1496 aa22.53■■□□□ 1.2
LRFN1-201ENST00000248668 MAGI1Q96QZ7 1491 aaPredicted RBP22.53■■□□□ 1.2
LRFN1-201ENST00000248668 CDK11AQ9UQ88 783 aaPredicted RBP22.51■■□□□ 1.19
LRFN1-201ENST00000248668 KCNH8Q96L42 1107 aa22.51■■□□□ 1.19
LRFN1-201ENST00000248668 PRG4Q92954 1404 aaPredicted RBP22.5■■□□□ 1.19
LRFN1-201ENST00000248668 TCOF1Q13428 1488 aaKnown RBP22.48■■□□□ 1.19
LRFN1-201ENST00000248668 RAPGEF6Q8TEU7 1601 aa22.47■■□□□ 1.19
LRFN1-201ENST00000248668 TIMELESSQ9UNS1 1208 aa22.47■■□□□ 1.19
LRFN1-201ENST00000248668 KDM6BO15054 1643 aa22.46■■□□□ 1.19
LRFN1-201ENST00000248668 MIA2Q96PC5 1412 aa22.45■■□□□ 1.18
LRFN1-201ENST00000248668 CFDP1Q9UEE9 299 aaPredicted RBP22.43■■□□□ 1.18
LRFN1-201ENST00000248668 CARMIL2Q6F5E8 1435 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms