RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YEL076C	P39971	216 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	YNL195C	P40168	261 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	IRC5	P43610	853 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	ARG5,6	Q01217	863 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	MTD1	Q02046	320 aa	Known RBP	5.6	□□□□□ -1.51
CAF16	YFL028C	GCN5	Q03330	439 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	RCR2	Q03446	210 aa	Known RBP	5.6	□□□□□ -1.51
CAF16	YFL028C	STP4	Q07351	490 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	NOP12	Q08208	459 aa	Known RBP	5.6	□□□□□ -1.51
CAF16	YFL028C	NKP1	Q12493	238 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	DFG16	Q99234	619 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	FRS1	P15624	595 aa	Known RBP	5.59	□□□□□ -1.51
CAF16	YFL028C	SEC18	P18759	758 aa	Known RBP	5.59	□□□□□ -1.51
CAF16	YFL028C	HOP1	P20050	605 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	LRG1	P35688	1017 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	YBR259W	P38338	688 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	RPP1	P38786	293 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	STL1	P39932	569 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	GID8	P40208	455 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	SAP185	P40856	1058 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	TEP1	P53916	434 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	MCM21	Q06675	368 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	ACK1	Q07622	623 aa	Predicted RBP	5.59	□□□□□ -1.51
CAF16	YFL028C	PSF3	Q12146	194 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	KCS1	Q12494	1050 aa		5.59	□□□□□ -1.51
CAF16	YFL028C	CAD1	P24813	409 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	MF(ALPHA)2	P32435	120 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	PET127	P32606	800 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	APL2	P36000	726 aa	Predicted RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	OMA1	P36163	345 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	YHR112C	P38716	378 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	SCS2	P40075	244 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	ENP2	P48234	707 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	SPT20	P50875	604 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	MOT3	P54785	490 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	REC102	Q02721	264 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	SLU7	Q02775	382 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	SVL3	Q03088	825 aa	Known RBP	5.58	□□□□□ -1.52
CAF16	YFL028C	NRG1	Q03125	231 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	VPS36	Q06696	566 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	PSR2	Q07949	397 aa		5.58	□□□□□ -1.52
CAF16	YFL028C	YLR419W	Q06698	1435 aa	Known RBP	5.57	□□□□□ -1.52
CAF16	YFL028C	IME1	P21190	360 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	MSH1	P25846	959 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	SDS22	P36047	338 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	YHR033W	P38690	423 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	PLB1	P39105	664 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	VID27	P40157	782 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	VPS27	P40343	622 aa	Known RBP	5.57	□□□□□ -1.52
CAF16	YFL028C	ERR3	P42222	437 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	HLR1	Q04429	423 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	BRE1	Q07457	700 aa	Known RBP	5.57	□□□□□ -1.52
CAF16	YFL028C	MCH5	Q08777	521 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	ARP7	Q12406	477 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	ECM3	Q99252	613 aa		5.57	□□□□□ -1.52
CAF16	YFL028C	ERG20	P08524	352 aa	Known RBP	5.56	□□□□□ -1.52
CAF16	YFL028C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	5.56	□□□□□ -1.52	not detected
CAF16	YFL028C	CDC20	P26309	610 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	PET309	P32522	965 aa	Predicted RBP	5.56	□□□□□ -1.52
CAF16	YFL028C	TGL1	P34163	548 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	TAF4	P50105	388 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	VBA4	Q04602	768 aa	Known RBP	5.56	□□□□□ -1.52
CAF16	YFL028C	GAD1	Q04792	585 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	YLR224W	Q05947	369 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	TGL5	Q12043	749 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	TRM11	Q12463	433 aa		5.56	□□□□□ -1.52
CAF16	YFL028C	ADH4	P10127	382 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	SPE2	P21182	396 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	RNR1	P21524	888 aa	Known RBP	5.55	□□□□□ -1.52
CAF16	YFL028C	SSH4	P32343	579 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	ECM1	P39715	212 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	RPT2	P40327	437 aa	Known RBP	5.55	□□□□□ -1.52
CAF16	YFL028C	BUD8	P41698	603 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	PXA1	P41909	870 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	LSB3	P43603	459 aa	Known RBP	5.55	□□□□□ -1.52
CAF16	YFL028C	MRPS35	P53292	345 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	YML131W	Q03102	365 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	YDR132C	Q03900	495 aa		5.55	□□□□□ -1.52
CAF16	YFL028C	TMA64	Q04600	565 aa	Known RBP	5.55	□□□□□ -1.52
CAF16	YFL028C	RTK1	Q12100	620 aa	Predicted RBP	5.55	□□□□□ -1.52
CAF16	YFL028C	RPS13	P05756	151 aa	Known RBP	5.54	□□□□□ -1.52
CAF16	YFL028C	CBP3	P21560	335 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	MSM1	P22438	575 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	ERG6	P25087	383 aa	Known RBP	5.54	□□□□□ -1.52
CAF16	YFL028C	KAR4	P25583	335 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	CTF13	P35203	478 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	APM3	P38153	483 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	MAD3	P47074	515 aa		5.54	□□□□□ -1.52
CAF16	YFL028C	HMO1	Q03973	246 aa	Known RBP	5.54	□□□□□ -1.52
CAF16	YFL028C	TY4B-H	P0C2J7	1802 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	TY4B-J	P47024	1803 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	RPS9B	P05755	195 aa	Known RBP	5.53	□□□□□ -1.52
CAF16	YFL028C	VAS1	P07806	1104 aa	Known RBP	5.53	□□□□□ -1.52
CAF16	YFL028C	SWD1	P39706	426 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	FKH2	P41813	862 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	IML2	P47031	731 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	TEX1	P53851	422 aa	Known RBP	5.53	□□□□□ -1.52
CAF16	YFL028C	SQS1	P53866	767 aa	Known RBP	5.53	□□□□□ -1.52
CAF16	YFL028C	NSE5	Q03718	556 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	PPN1	Q04119	674 aa		5.53	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms