RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	MUB1	Q03162	620 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	FCP1	Q03254	732 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	HEH2	Q03281	663 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	DML1	Q03652	475 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	SHE9	Q04172	456 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	TSR2	Q06672	205 aa	Known RBP	5.21	□□□□□ -1.58
CDC4	YFL009W	SPO75	Q07798	868 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	YAP7	Q08182	245 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	BUG1	Q12191	341 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	NBL1	Q3E7Y6	73 aa		5.21	□□□□□ -1.58
CDC4	YFL009W	PRP9	P19736	530 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	YBL055C	P34220	418 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	MRPL16	P38064	232 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	PDS1	P40316	373 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	ALG5	P40350	334 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	SDS3	P40505	327 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	XKS1	P42826	600 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	ATG36	P46983	293 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	TMA20	P89886	181 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	RSM28	Q03430	361 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	YDR179W-A	Q03983	463 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	ECI1	Q05871	280 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	HDA2	Q06629	674 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	RKM1	Q08961	583 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	GLO4	Q12320	285 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	YML002W	P0CF17	737 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	SBP1	P10080	294 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	YCR016W	P25617	290 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	EFT1	P32324	842 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	COY1	P34237	679 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	SMC2	P38989	1170 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	PCF11	P39081	626 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	RPC17	P47076	161 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	ECL1	P48235	211 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	PPT1	P53043	513 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	CPR6	P53691	371 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	UBP16	Q02863	499 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	DIG1	Q03063	452 aa	Known RBP	5.2	□□□□□ -1.58
CDC4	YFL009W	PKH1	Q03407	766 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	DON1	Q05610	365 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	RTT10	Q08924	1013 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	ATP16	Q12165	160 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	YOR111W	Q99210	232 aa		5.2	□□□□□ -1.58
CDC4	YFL009W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	not detected
CDC4	YFL009W	THR1	P17423	357 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	SEC15	P22224	910 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	SEC21	P32074	935 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	AFG2	P32794	780 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	RPT3	P33298	428 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	YRO2	P38079	344 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	IFA38	P38286	347 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	IES5	P40060	125 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	CAB2	P40506	365 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	IRR1	P40541	1150 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	NMD5	P46970	1048 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	FMP33	P46998	180 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	TAD1	P53065	400 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	CWC24	P53769	259 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	YNL040W	P53960	456 aa	Predicted RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	HDA1	P53973	706 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	VIP1	Q06685	1146 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	UIP4	Q08926	304 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	TAH18	Q12181	623 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	CLF1	Q12309	687 aa	Predicted RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	LSO2	Q3E772	92 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	RPL24A	P04449	155 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	ERG11	P10614	530 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	HMG1	P12683	1054 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	POL3	P15436	1097 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	SEN2	P16658	377 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	SPS22	P25380	463 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	SEA4	P38164	1038 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	YGR266W	P53326	701 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	RPM2	Q02773	1202 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	MTC5	Q03897	1148 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	FMP42	Q04991	504 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	YPL216W	Q08964	1102 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	CDC53	Q12018	815 aa	Known RBP	5.19	□□□□□ -1.58
CDC4	YFL009W	SRF1	Q12516	437 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	SEY1	Q99287	776 aa		5.19	□□□□□ -1.58
CDC4	YFL009W	CCP1	P00431	361 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	PGK1	P00560	416 aa	Known RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	HIS3	P06633	220 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	CMD1	P06787	147 aa	Known RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	HEM1	P09950	548 aa	Predicted RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	FUS1	P11710	512 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	AST1	P35183	429 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	PEX28	P38848	579 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	PIK1	P39104	1066 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	MKT1	P40850	830 aa	Known RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	RFX1	P48743	811 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	OPT2	Q06593	877 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	YPR172W	Q06608	200 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	PMT7	Q06644	662 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	RUP1	Q12242	671 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	SNU66	Q12420	587 aa	Predicted RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.18	□□□□□ -1.58
CDC4	YFL009W	TY1A-DR6	P0CX70	440 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	TY1A-ER1	P0CX71	440 aa		5.18	□□□□□ -1.58
CDC4	YFL009W	TY1A-LR2	P0CX72	440 aa		5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms