Protein–RNA interactions for Protein: P0CX71

TY1A-ER1, Transposon Ty1-ER1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-ER1P0CX71 NSR1YGR159C 1245 nt15.89■□□□□ 0.13
TY1A-ER1P0CX71 YML009W-BYML009W-B 477 nt15.24■□□□□ 0.03
TY1A-ER1P0CX71 MDJ1YFL016C 1536 nt14.93□□□□□ -0.02
TY1A-ER1P0CX71 NOP1YDL014W 984 nt14.43□□□□□ -0.1
TY1A-ER1P0CX71 SSA3YBL075C 1950 nt13.72□□□□□ -0.21
TY1A-ER1P0CX71 YJL027CYJL027C 417 nt13.61□□□□□ -0.23
TY1A-ER1P0CX71 Q0182Q0182 405 nt13.51□□□□□ -0.25
TY1A-ER1P0CX71 MOT3YMR070W 1473 nt13.37□□□□□ -0.27
TY1A-ER1P0CX71 DBP2YNL112W 1641 nt12.96□□□□□ -0.33
TY1A-ER1P0CX71 YBR190WYBR190W 312 nt12.9□□□□□ -0.34
TY1A-ER1P0CX71 SRX1YKL086W 384 nt12.68□□□□□ -0.38
TY1A-ER1P0CX71 YKL036CYKL036C 393 nt12.6□□□□□ -0.39
TY1A-ER1P0CX71 RTC3YHR087W 336 nt12.52□□□□□ -0.41
TY1A-ER1P0CX71 Q0297Q0297 156 nt12.45□□□□□ -0.42
TY1A-ER1P0CX71 PUT4YOR348C 1884 nt12.44□□□□□ -0.42
TY1A-ER1P0CX71 SPT5YML010W 3192 nt12.1□□□□□ -0.47
TY1A-ER1P0CX71 TRN1tP(UGG)A 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 SUF9tP(UGG)F 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 SUF8tP(UGG)H 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 tP(UGG)LtP(UGG)L 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 SUF7tP(UGG)M 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 tP(UGG)N1tP(UGG)N1 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 tP(UGG)N2tP(UGG)N2 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 tP(UGG)O1tP(UGG)O1 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 SUF11tP(UGG)O2 72 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 SSA4YER103W 1929 nt11.97□□□□□ -0.49
TY1A-ER1P0CX71 ARE1YCR048W 1833 nt11.96□□□□□ -0.49
TY1A-ER1P0CX71 POA1YBR022W 534 nt11.95□□□□□ -0.5
TY1A-ER1P0CX71 YCR051WYCR051W 669 nt11.93□□□□□ -0.5
TY1A-ER1P0CX71 BSC6YOL137W 1494 nt11.84□□□□□ -0.51
TY1A-ER1P0CX71 CCC1YLR220W 969 nt11.83□□□□□ -0.52
TY1A-ER1P0CX71 RVS167YDR388W 1449 nt11.77□□□□□ -0.53
TY1A-ER1P0CX71 YHR049C-AYHR049C-A 297 nt11.73□□□□□ -0.53
TY1A-ER1P0CX71 SCJ1YMR214W 1134 nt11.72□□□□□ -0.53
TY1A-ER1P0CX71 NME1NME1 340 nt11.67□□□□□ -0.54
TY1A-ER1P0CX71 BDF1YLR399C 2061 nt11.67□□□□□ -0.54
TY1A-ER1P0CX71 SAH1YER043C 1350 nt11.66□□□□□ -0.54
TY1A-ER1P0CX71 YGR139WYGR139W 339 nt11.54□□□□□ -0.56
TY1A-ER1P0CX71 URN1YPR152C 1398 nt11.51□□□□□ -0.57
TY1A-ER1P0CX71 OPI9YLR338W 858 nt11.48□□□□□ -0.57
TY1A-ER1P0CX71 TAT1YBR069C 1860 nt11.45□□□□□ -0.58
TY1A-ER1P0CX71 PAC11YDR488C 1602 nt11.4□□□□□ -0.58
TY1A-ER1P0CX71 BUD23YCR047C 828 nt11.36□□□□□ -0.59
TY1A-ER1P0CX71 DEP1YAL013W 1218 nt11.26□□□□□ -0.61
TY1A-ER1P0CX71 SHR5YOL110W 714 nt11.25□□□□□ -0.61
TY1A-ER1P0CX71 NVJ2YPR091C 2313 nt11.21□□□□□ -0.61
TY1A-ER1P0CX71 MEP2YNL142W 1500 nt11.21□□□□□ -0.61
TY1A-ER1P0CX71 RPP1BYDL130W 321 nt11.16□□□□□ -0.62
TY1A-ER1P0CX71 PTC2YER089C 1395 nt11.15□□□□□ -0.63
TY1A-ER1P0CX71 NAB2YGL122C 1578 nt11.09□□□□□ -0.63
TY1A-ER1P0CX71 SCS3YGL126W 1143 nt11.09□□□□□ -0.63
TY1A-ER1P0CX71 PUN1YLR414C 792 nt11.07□□□□□ -0.64
TY1A-ER1P0CX71 DCW1YKL046C 1350 nt11.06□□□□□ -0.64
TY1A-ER1P0CX71 tP(UGG)O3tP(UGG)O3 72 nt11.06□□□□□ -0.64
TY1A-ER1P0CX71 YOL085CYOL085C 342 nt11.01□□□□□ -0.65
TY1A-ER1P0CX71 RPN10YHR200W 807 nt10.98□□□□□ -0.65
TY1A-ER1P0CX71 YBR220CYBR220C 1683 nt10.98□□□□□ -0.65
TY1A-ER1P0CX71 PKP1YIL042C 1185 nt10.95□□□□□ -0.66
TY1A-ER1P0CX71 YNL208WYNL208W 600 nt10.93□□□□□ -0.66
TY1A-ER1P0CX71 FIS1YIL065C 468 nt10.9□□□□□ -0.66
TY1A-ER1P0CX71 YJR018WYJR018W 363 nt10.88□□□□□ -0.67
TY1A-ER1P0CX71 EMI2YDR516C 1503 nt10.83□□□□□ -0.68
TY1A-ER1P0CX71 YPS1YLR120C 1710 nt10.82□□□□□ -0.68
TY1A-ER1P0CX71 PET122YER153C 765 nt10.8□□□□□ -0.68
TY1A-ER1P0CX71 DAL1YIR027C 1383 nt10.78□□□□□ -0.68
TY1A-ER1P0CX71 PCH2YBR186W 1695 nt10.76□□□□□ -0.69
TY1A-ER1P0CX71 GUT2YIL155C 1950 nt10.76□□□□□ -0.69
TY1A-ER1P0CX71 SDH1YKL148C 1923 nt10.72□□□□□ -0.69
TY1A-ER1P0CX71 CSM2YIL132C 642 nt10.71□□□□□ -0.69
TY1A-ER1P0CX71 FPR4YLR449W 1179 nt10.71□□□□□ -0.69
TY1A-ER1P0CX71 PHO4YFR034C 939 nt10.7□□□□□ -0.7
TY1A-ER1P0CX71 YMR090WYMR090W 684 nt10.7□□□□□ -0.7
TY1A-ER1P0CX71 YHR165W-AYHR165W-A 312 nt10.68□□□□□ -0.7
TY1A-ER1P0CX71 YJR120WYJR120W 351 nt10.68□□□□□ -0.7
TY1A-ER1P0CX71 YDJ1YNL064C 1230 nt10.68□□□□□ -0.7
TY1A-ER1P0CX71 PIB2YGL023C 1908 nt10.68□□□□□ -0.7
TY1A-ER1P0CX71 FPS1YLL043W 2010 nt10.67□□□□□ -0.7
TY1A-ER1P0CX71 YDL221WYDL221W 552 nt10.67□□□□□ -0.7
TY1A-ER1P0CX71 CAC2YML102W 1407 nt10.63□□□□□ -0.71
TY1A-ER1P0CX71 YDR095CYDR095C 411 nt10.6□□□□□ -0.71
TY1A-ER1P0CX71 GAR1YHR089C 618 nt10.58□□□□□ -0.72
TY1A-ER1P0CX71 SEC11YIR022W 504 nt10.58□□□□□ -0.72
TY1A-ER1P0CX71 INM2YDR287W 879 nt10.57□□□□□ -0.72
TY1A-ER1P0CX71 PTP1YDL230W 1008 nt10.55□□□□□ -0.72
TY1A-ER1P0CX71 SCC4YER147C 1875 nt10.51□□□□□ -0.73
TY1A-ER1P0CX71 UME6YDR207C 2511 nt10.48□□□□□ -0.73
TY1A-ER1P0CX71 IRC15YPL017C 1500 nt10.46□□□□□ -0.74
TY1A-ER1P0CX71 RRN5YLR141W 1092 nt10.41□□□□□ -0.74
TY1A-ER1P0CX71 YSC84YHR016C 1407 nt10.4□□□□□ -0.75
TY1A-ER1P0CX71 GIS3YLR094C 1509 nt10.39□□□□□ -0.75
TY1A-ER1P0CX71 RPP2AYOL039W 321 nt10.39□□□□□ -0.75
TY1A-ER1P0CX71 SSA1YAL005C 1929 nt10.39□□□□□ -0.75
TY1A-ER1P0CX71 RTF1YGL244W 1677 nt10.38□□□□□ -0.75
TY1A-ER1P0CX71 PAU21YOR394W 495 nt10.38□□□□□ -0.75
TY1A-ER1P0CX71 PAU22YPL282C 495 nt10.38□□□□□ -0.75
TY1A-ER1P0CX71 YHL050CYHL050C 2094 nt10.38□□□□□ -0.75
TY1A-ER1P0CX71 PTK1YKL198C 1989 nt10.35□□□□□ -0.75
TY1A-ER1P0CX71 RPP2BYDR382W 333 nt10.34□□□□□ -0.75
TY1A-ER1P0CX71 YBL100CYBL100C 315 nt10.34□□□□□ -0.75
TY1A-ER1P0CX71 SCR1SCR1 522 nt10.33□□□□□ -0.76
Retrieved 100 of 7,029 protein–RNA pairs in 40.9 ms