RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	DOT6	P40059	670 aa	Known RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	RAD26	P40352	1085 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	STU2	P46675	888 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	UTP22	P53254	1237 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	FCP1	Q03254	732 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	HEH2	Q03281	663 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	ARA2	Q04212	335 aa		4.91	□□□□□ -1.62
CDC48	YDL126C	SPN1	Q06505	410 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC48	YDL126C	ARD1	P07347	238 aa	Predicted RBP	4.9	□□□□□ -1.62
CDC48	YDL126C	VAS1	P07806	1104 aa	Known RBP	4.9	□□□□□ -1.62
CDC48	YDL126C	CBF2	P32504	956 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	YBR284W	P38150	797 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	CCT3	P39077	534 aa	Known RBP	4.9	□□□□□ -1.62
CDC48	YDL126C	CAJ1	P39101	391 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	TY1A-DR2	Q03964	440 aa	Known RBP	4.9	□□□□□ -1.62
CDC48	YDL126C	TAF11	Q04226	346 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	BUG1	Q12191	341 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	TY1A-BL	Q12266	440 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	SAC3	P46674	1301 aa		4.9	□□□□□ -1.62
CDC48	YDL126C	MET8	P15807	274 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	MLS1	P30952	554 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	BCK2	P33306	851 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	ECM1	P39715	212 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	RET2	P43621	546 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	MET13	P53128	600 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	ELA1	P53861	379 aa	Predicted RBP	4.9	□□□□□ -1.63
CDC48	YDL126C	BNI5	P53890	448 aa	Known RBP	4.9	□□□□□ -1.63
CDC48	YDL126C	MTQ2	Q03920	221 aa	Predicted RBP	4.9	□□□□□ -1.63
CDC48	YDL126C	ORM2	Q06144	216 aa		4.9	□□□□□ -1.63
CDC48	YDL126C	SRD1	P09007	221 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	YER152C	P10356	443 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	VBA3	P25594	458 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	DEP1	P31385	405 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	TFC3	P34111	1160 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	CEP3	P40969	608 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	FET4	P40988	552 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	GYP8	P43570	497 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	YJL171C	P46992	396 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	PMT3	P47190	753 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	YGL242C	P53066	181 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	LSC2	P53312	427 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	REX2	P54964	269 aa	Known RBP	4.89	□□□□□ -1.63
CDC48	YDL126C	GNT1	Q12096	491 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	GLE1	Q12315	538 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	DPH6	Q12429	685 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	DED1	P06634	604 aa	Known RBP	4.89	□□□□□ -1.63
CDC48	YDL126C	SPC29	P33419	253 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	PEX5	P35056	612 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	RGD1	P38339	666 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	BCD1	P38772	366 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	LRP1	P38801	184 aa	Known RBP	4.89	□□□□□ -1.63
CDC48	YDL126C	SHU2	P38957	223 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	NPP2	P39997	493 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	VTC2	P43585	828 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	SPO74	P45819	413 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	GUP1	P53154	560 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	NSE5	Q03718	556 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	TFC6	Q06339	672 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	YLR352W	Q06479	807 aa		4.89	□□□□□ -1.63
CDC48	YDL126C	INH1	P01097	85 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	RPL11A	P0C0W9	174 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	PET123	P17558	318 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	DAL3	P32459	195 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	SAP185	P40856	1058 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	ROG3	P43602	733 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	SGM1	P47166	707 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	MTC3	P53077	123 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	VTC3	Q02725	835 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	HOS3	Q02959	697 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	EIS1	Q05050	843 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	RPL11B	Q3E757	174 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	HSF1	P10961	833 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	CDC12	P32468	407 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	VMA8	P32610	256 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	KTR3	P38130	404 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	YBR238C	P38330	731 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	NIT2	P47016	307 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	YJL055W	P47044	245 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	HXT16	P47185	567 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	PCL10	P53124	433 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	ARR1	Q06596	294 aa		4.88	□□□□□ -1.63
CDC48	YDL126C	YDL124W	Q07551	312 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	PUS1	Q12211	544 aa	Known RBP	4.88	□□□□□ -1.63
CDC48	YDL126C	RNR2	P09938	399 aa	Known RBP	4.87	□□□□□ -1.63
CDC48	YDL126C	DIT1	P21623	536 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	YKE2	P52553	114 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	INP2	Q03824	705 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	OPT2	Q06593	877 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	RIM20	Q12033	661 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	CLB1	P24868	471 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	PTP2	P29461	750 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	SMY2	P32909	740 aa	Known RBP	4.87	□□□□□ -1.63
CDC48	YDL126C	SLA2	P33338	968 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	SWH1	P35845	1188 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	YKL077W	P36081	392 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	PCM1	P38628	557 aa	Known RBP	4.87	□□□□□ -1.63
CDC48	YDL126C	YFL054C	P43549	646 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	GCV1	P48015	400 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	LYS5	P50113	272 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	MRPS35	P53292	345 aa		4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms