RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	SWI1	P09547	1314 aa		5	□□□□□ -1.61
CDC48	YDL126C	CYB2	P00175	591 aa		5	□□□□□ -1.61
CDC48	YDL126C	APL2	P36000	726 aa	Predicted RBP	5	□□□□□ -1.61
CDC48	YDL126C	CIN4	P39110	191 aa		5	□□□□□ -1.61
CDC48	YDL126C	DOT5	P40553	215 aa		5	□□□□□ -1.61
CDC48	YDL126C	PXR1	P53335	271 aa	Predicted RBP	5	□□□□□ -1.61
CDC48	YDL126C	YML131W	Q03102	365 aa		5	□□□□□ -1.61
CDC48	YDL126C	PHM6	Q05637	104 aa		5	□□□□□ -1.61
CDC48	YDL126C	YDR056C	Q12025	205 aa		5	□□□□□ -1.61
CDC48	YDL126C	TMA7	Q3E764	64 aa	Known RBP	5	□□□□□ -1.61
CDC48	YDL126C	CDC4	P07834	779 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	GCD7	P32502	381 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC48	YDL126C	NUP133	P36161	1157 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	PET100	P38958	111 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	RIO2	P40160	425 aa	Known RBP	4.99	□□□□□ -1.61
CDC48	YDL126C	RSM26	P47141	266 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	ZDS2	P54786	942 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	VPS60	Q03390	229 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	COG8	Q04632	607 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	SSP2	Q08646	371 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	SOG2	Q08817	791 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	INO1	P11986	533 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	ASH1	P34233	588 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	SLN1	P39928	1220 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC48	YDL126C	YGR250C	P53316	781 aa	Known RBP	4.99	□□□□□ -1.61
CDC48	YDL126C	MET14	Q02196	202 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	YDR286C	Q05530	114 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	REH1	Q06709	432 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	RAD50	P12753	1312 aa		4.99	□□□□□ -1.61
CDC48	YDL126C	ARG82	P07250	355 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	ZUO1	P32527	433 aa	Known RBP	4.98	□□□□□ -1.61
CDC48	YDL126C	YKR075C	P36155	307 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	AHP1	P38013	176 aa	Known RBP	4.98	□□□□□ -1.61
CDC48	YDL126C	SLS1	P42900	643 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	UBP15	P50101	1230 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	YNL193W	P53870	558 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	VPS64	Q03944	604 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	YIG1	Q08956	461 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	DBP5	P20449	482 aa	Known RBP	4.98	□□□□□ -1.61
CDC48	YDL126C	IMP2'	P32351	346 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	RGA1	P39083	1007 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	MGS1	P40151	587 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	YGR237C	P50089	785 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	TFB2	Q02939	513 aa		4.98	□□□□□ -1.61
CDC48	YDL126C	RPN7	Q06103	429 aa	Known RBP	4.98	□□□□□ -1.61
CDC48	YDL126C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
CDC48	YDL126C	RAD3	P06839	778 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	SWC3	P31376	625 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	RXT2	P38255	430 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	NPR3	P38742	1146 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	YHR218W	P38899	603 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	YTA6	P40328	754 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	DAS1	P47005	663 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	SPO71	Q03868	1245 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	NKP2	Q06162	153 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	YOR389W	Q08912	624 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	OSH2	Q12451	1283 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	RKM4	Q12504	494 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	THR4	P16120	514 aa	Known RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	DBP2	P24783	546 aa	Known RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	SYP1	P25623	870 aa	Known RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	BRF1	P29056	596 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	MCM10	P32354	571 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	HSP78	P33416	811 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	RRN3	P36070	627 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	MRPL16	P38064	232 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	RRF1	P38771	230 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	DSN1	P40568	576 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	LSB6	P42951	607 aa		4.97	□□□□□ -1.61
CDC48	YDL126C	RSC8	P43609	557 aa	Known RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	HSV2	P50079	448 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	SXM1	Q04175	944 aa	Known RBP	4.97	□□□□□ -1.61
CDC48	YDL126C	SQT1	P35184	431 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	PAN5	P38787	379 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	SIT1	P39980	628 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	GPP2	P40106	250 aa	Known RBP	4.96	□□□□□ -1.61
CDC48	YDL126C	YGL176C	P46945	554 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	UPF3	P48412	387 aa	Known RBP	4.96	□□□□□ -1.61
CDC48	YDL126C	NPY1	P53164	384 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	SRP1	Q02821	542 aa	Known RBP	4.96	□□□□□ -1.61
CDC48	YDL126C	PHM7	Q12252	991 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	SEC39	Q12745	709 aa		4.96	□□□□□ -1.61
CDC48	YDL126C	ARE1	P25628	610 aa		4.96	□□□□□ -1.62
CDC48	YDL126C	RFC1	P38630	861 aa	Known RBP	4.96	□□□□□ -1.62
CDC48	YDL126C	ALR2	P43553	858 aa		4.96	□□□□□ -1.62
CDC48	YDL126C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
CDC48	YDL126C	RAD17	P48581	401 aa		4.96	□□□□□ -1.62
CDC48	YDL126C	HAS1	Q03532	505 aa	Known RBP	4.96	□□□□□ -1.62
CDC48	YDL126C	VTI1	Q04338	217 aa		4.96	□□□□□ -1.62
CDC48	YDL126C	MED1	Q12321	566 aa		4.96	□□□□□ -1.62
CDC48	YDL126C	SWI6	P09959	803 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	AAD3	P25612	363 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	DPB3	P27344	201 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	TFC4	P33339	1025 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	AIM20	P40451	204 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	NDC80	P40460	691 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	CNN1	P43618	361 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	NUP85	P46673	744 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	HOT1	Q03213	719 aa		4.95	□□□□□ -1.62
CDC48	YDL126C	PGC1	Q08959	321 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms