RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM2	YLR058C	TIM8	P57744	87 aa		11.36	□□□□□ -0.59
SHM2	YLR058C	GIR2	Q03768	265 aa	Predicted RBP	11.36	□□□□□ -0.59
SHM2	YLR058C	RLP24	Q07915	199 aa	Known RBP	11.36	□□□□□ -0.59
SHM2	YLR058C	MOT1	P32333	1867 aa		11.36	□□□□□ -0.59
SHM2	YLR058C	EBP2	P36049	427 aa	Known RBP	11.35	□□□□□ -0.59
SHM2	YLR058C	ORC5	P50874	479 aa		11.35	□□□□□ -0.59
SHM2	YLR058C	DON1	Q05610	365 aa		11.35	□□□□□ -0.59
SHM2	YLR058C	FIG4	P42837	879 aa		11.35	□□□□□ -0.59
SHM2	YLR058C	AZR1	P50080	613 aa		11.35	□□□□□ -0.59
SHM2	YLR058C	MNP1	P53163	194 aa	Predicted RBP	11.35	□□□□□ -0.59
SHM2	YLR058C	UTP14	Q04500	899 aa	Known RBP	11.35	□□□□□ -0.59
SHM2	YLR058C	ECM7	Q06200	448 aa		11.35	□□□□□ -0.59
SHM2	YLR058C	SWI6	P09959	803 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	WHI2	P12611	486 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	CYC8	P14922	966 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	VMA1	P17255	1071 aa	Known RBP	11.34	□□□□□ -0.59
SHM2	YLR058C	VID24	P38263	362 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	SHE10	P53075	577 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	TRS130	Q03660	1102 aa		11.34	□□□□□ -0.59
SHM2	YLR058C	YKL023W	P36103	277 aa	Known RBP	11.33	□□□□□ -0.6
SHM2	YLR058C	PAM1	P37304	830 aa	Known RBP	11.33	□□□□□ -0.6
SHM2	YLR058C	NPP2	P39997	493 aa		11.33	□□□□□ -0.6
SHM2	YLR058C	VFA1	P40080	203 aa		11.33	□□□□□ -0.6
SHM2	YLR058C	ASN1	P49089	572 aa	Known RBP	11.33	□□□□□ -0.6
SHM2	YLR058C	HSH155	P49955	971 aa	Known RBP	11.33	□□□□□ -0.6
SHM2	YLR058C	YLR287C	Q05881	355 aa		11.33	□□□□□ -0.6
SHM2	YLR058C	ALD5	P40047	520 aa	Known RBP	11.32	□□□□□ -0.6
SHM2	YLR058C	INP51	P40559	946 aa	Known RBP	11.32	□□□□□ -0.6
SHM2	YLR058C	COS5	P47187	383 aa		11.32	□□□□□ -0.6
SHM2	YLR058C	YLR297W	Q05899	129 aa		11.32	□□□□□ -0.6
SHM2	YLR058C	APL4	Q12028	832 aa		11.32	□□□□□ -0.6
SHM2	YLR058C	ATG9	Q12142	997 aa		11.32	□□□□□ -0.6
SHM2	YLR058C	RRP6	Q12149	733 aa	Known RBP	11.32	□□□□□ -0.6
SHM2	YLR058C	XRS2	P33301	854 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.31	□□□□□ -0.6	not detected
SHM2	YLR058C	LEO1	P38439	464 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	TVP23	P38962	199 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	11.31	□□□□□ -0.6	not detected
SHM2	YLR058C	MUK1	Q02866	612 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	UME1	Q03010	460 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	PLP2	Q12017	286 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	HMI1	Q12039	706 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	SLX4	Q12098	748 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	ZPS1	Q12512	249 aa		11.31	□□□□□ -0.6
SHM2	YLR058C	MRX3	P38172	270 aa		11.3	□□□□□ -0.6
SHM2	YLR058C	CSR1	Q06705	408 aa	Known RBP	11.3	□□□□□ -0.6
SHM2	YLR058C	YDR524C-B	Q3E6R4	66 aa		11.3	□□□□□ -0.6
SHM2	YLR058C	RIF1	P29539	1916 aa		11.3	□□□□□ -0.6
SHM2	YLR058C	COX4	P04037	155 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	HEM1	P09950	548 aa	Predicted RBP	11.29	□□□□□ -0.6
SHM2	YLR058C	TUP1	P16649	713 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	SKG6	P32900	734 aa	Predicted RBP	11.29	□□□□□ -0.6
SHM2	YLR058C	MNR2	P35724	969 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	MMS4	P38257	691 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	ECM30	Q06673	1274 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	SHS1	Q07657	551 aa		11.29	□□□□□ -0.6
SHM2	YLR058C	PPR1	P07272	904 aa	Predicted RBP	11.28	□□□□□ -0.6
SHM2	YLR058C	SPO12	P17123	173 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	SDH2	P21801	266 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	SPC110	P32380	944 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	NIP100	P33420	868 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	SGM1	P47166	707 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.28	□□□□□ -0.6	not detected
SHM2	YLR058C	YDL206W	Q12424	762 aa		11.28	□□□□□ -0.6
SHM2	YLR058C	TOM70	P07213	617 aa	Known RBP	11.27	□□□□□ -0.6
SHM2	YLR058C	GLN3	P18494	730 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	ADE2	P21264	571 aa	Known RBP	11.27	□□□□□ -0.6
SHM2	YLR058C	DRE2	P36152	348 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	SDS3	P40505	327 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	TAD1	P53065	400 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	YPL034W	Q03083	165 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	DOT1	Q04089	582 aa	Known RBP	11.27	□□□□□ -0.6
SHM2	YLR058C	PIB1	Q06651	286 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	YCG1	Q06680	1035 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	YPR078C	Q06813	372 aa		11.27	□□□□□ -0.6
SHM2	YLR058C	RPL4A	P10664	362 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	POT1	P27796	417 aa	Known RBP RIP-Chip data	11.26	□□□□□ -0.61	not detected
SHM2	YLR058C	SMC1	P32908	1225 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	MFT1	P33441	392 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	PCH2	P38126	564 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	ATG3	P40344	310 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	YAP5	P40574	245 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	IES1	P43579	692 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	RPL4B	P49626	362 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	ERG5	P54781	538 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	TBF1	Q02457	562 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	NEW1	Q08972	1196 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	LDB19	Q12502	818 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	ADE4	P04046	510 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	NAT1	P12945	854 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	IME1	P21190	360 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	RRP43	P25359	394 aa	Predicted RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	PDC6	P26263	563 aa	Known RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	CDC11	P32458	415 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	SWI3	P32591	825 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	FTR1	P40088	404 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	OSW7	P43611	510 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	RPA49	Q01080	415 aa	Predicted RBP	11.26	□□□□□ -0.61
SHM2	YLR058C	RGA2	Q06407	1009 aa		11.26	□□□□□ -0.61
SHM2	YLR058C	PRR1	P28708	518 aa		11.25	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 104.6 ms