RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	CSR1	Q06705	408 aa	Known RBP	15.29	■□□□□ 0.04
DEP1	YAL013W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	15.28	■□□□□ 0.04	not detected
DEP1	YAL013W	PDC6	P26263	563 aa	Known RBP	15.28	■□□□□ 0.04
DEP1	YAL013W	MUD1	P32605	298 aa	Known RBP	15.28	■□□□□ 0.04
DEP1	YAL013W	SMY2	P32909	740 aa	Known RBP	15.28	■□□□□ 0.04
DEP1	YAL013W	GUA1	P38625	525 aa	Known RBP	15.28	■□□□□ 0.04
DEP1	YAL013W	IES1	P43579	692 aa		15.28	■□□□□ 0.04
DEP1	YAL013W	OSW2	Q12202	724 aa		15.28	■□□□□ 0.04
DEP1	YAL013W	RIF1	P29539	1916 aa		15.27	■□□□□ 0.04
DEP1	YAL013W	RRP43	P25359	394 aa	Predicted RBP	15.27	■□□□□ 0.04
DEP1	YAL013W	SKP2	P42843	763 aa		15.27	■□□□□ 0.04
DEP1	YAL013W	SHE10	P53075	577 aa		15.27	■□□□□ 0.04
DEP1	YAL013W	MSC2	Q03455	724 aa		15.27	■□□□□ 0.04
DEP1	YAL013W	ECM7	Q06200	448 aa		15.27	■□□□□ 0.04
DEP1	YAL013W	SWI6	P09959	803 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	TMT1	P32643	299 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	YKL023W	P36103	277 aa	Known RBP	15.26	■□□□□ 0.03
DEP1	YAL013W	GPT2	P36148	743 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	NPP2	P39997	493 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	PSF2	P40359	213 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	AIM21	P40563	679 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	OSW7	P43611	510 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	CUL3	P53202	744 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	BRE5	P53741	515 aa	Known RBP	15.26	■□□□□ 0.03
DEP1	YAL013W	YPR078C	Q06813	372 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	SUT2	Q12286	268 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	HIF1	Q12373	385 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	YDL206W	Q12424	762 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	ATG11	Q12527	1178 aa		15.26	■□□□□ 0.03
DEP1	YAL013W	VMA1	P17255	1071 aa	Known RBP	15.25	■□□□□ 0.03
DEP1	YAL013W	XRS2	P33301	854 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	EFM4	P40516	257 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	JJJ3	P47138	172 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	ORC5	P50874	479 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	ESBP6	P53918	673 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	15.25	■□□□□ 0.03	not detected
DEP1	YAL013W	UTP5	Q04177	643 aa	Known RBP	15.25	■□□□□ 0.03
DEP1	YAL013W	HFI1	Q12060	488 aa		15.25	■□□□□ 0.03
DEP1	YAL013W	MTF2	P10849	440 aa		15.24	■□□□□ 0.03
DEP1	YAL013W	SNA3	P14359	133 aa		15.24	■□□□□ 0.03
DEP1	YAL013W	SMC2	P38989	1170 aa	Known RBP	15.24	■□□□□ 0.03
DEP1	YAL013W	ACF4	P47129	309 aa		15.24	■□□□□ 0.03
DEP1	YAL013W	DAK1	P54838	584 aa	Known RBP	15.24	■□□□□ 0.03
DEP1	YAL013W	SMC1	P32908	1225 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	STO1	P34160	861 aa	Known RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	AFG3	P39925	761 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	SEC9	P40357	651 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	SAD1	P43589	448 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	YJR107W	P47145	328 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	ASN1	P49089	572 aa	Known RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	HSH155	P49955	971 aa	Known RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	MNP1	P53163	194 aa	Predicted RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	CUS1	Q02554	436 aa	Predicted RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	UTP14	Q04500	899 aa	Known RBP	15.23	■□□□□ 0.03
DEP1	YAL013W	SLX4	Q12098	748 aa		15.23	■□□□□ 0.03
DEP1	YAL013W	AFT1	P22149	690 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	RAD57	P25301	460 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	SCJ1	P25303	377 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	HXT1	P32465	570 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	RAD54	P32863	898 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	NIP100	P33420	868 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	MCX1	P38323	520 aa	Predicted RBP	15.22	■□□□□ 0.03
DEP1	YAL013W	MMM1	P41800	426 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	SMC3	P47037	1230 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	YDR090C	Q03193	310 aa		15.22	■□□□□ 0.03
DEP1	YAL013W	KIP1	P28742	1111 aa		15.21	■□□□□ 0.03
DEP1	YAL013W	TRS130	Q03660	1102 aa		15.21	■□□□□ 0.03
DEP1	YAL013W	YOL098C	Q12496	1037 aa		15.21	■□□□□ 0.03
DEP1	YAL013W	TOM70	P07213	617 aa	Known RBP	15.2	■□□□□ 0.02
DEP1	YAL013W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	15.2	■□□□□ 0.02	not detected
DEP1	YAL013W	HXT8	P40886	569 aa		15.2	■□□□□ 0.02
DEP1	YAL013W	VPS70	P47161	811 aa		15.2	■□□□□ 0.02
DEP1	YAL013W	APT1	P49435	187 aa	Known RBP	15.2	■□□□□ 0.02
DEP1	YAL013W	BOP3	P53958	396 aa		15.2	■□□□□ 0.02
DEP1	YAL013W	OPY2	Q06810	360 aa		15.2	■□□□□ 0.02
DEP1	YAL013W	LAA1	P39526	2014 aa		15.19	■□□□□ 0.02
DEP1	YAL013W	TRP2	P00899	507 aa	Known RBP	15.19	■□□□□ 0.02
DEP1	YAL013W	MRX3	P38172	270 aa		15.19	■□□□□ 0.02
DEP1	YAL013W	VID24	P38263	362 aa		15.19	■□□□□ 0.02
DEP1	YAL013W	DAS2	Q12084	232 aa		15.19	■□□□□ 0.02
DEP1	YAL013W	MDM20	Q12387	796 aa	Known RBP	15.19	■□□□□ 0.02
DEP1	YAL013W	RTP1	Q12751	981 aa		15.19	■□□□□ 0.02
DEP1	YAL013W	CDC42	P19073	191 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	MSS51	P32335	436 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	CDC11	P32458	415 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	CAJ1	P39101	391 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	RPA49	Q01080	415 aa	Predicted RBP	15.18	■□□□□ 0.02
DEP1	YAL013W	ULP1	Q02724	621 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	PPM1	Q04081	328 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	GIS3	Q12418	502 aa		15.18	■□□□□ 0.02
DEP1	YAL013W	PET123	P17558	318 aa		15.17	■□□□□ 0.02
DEP1	YAL013W	SET5	P38890	526 aa	Known RBP	15.17	■□□□□ 0.02
DEP1	YAL013W	FTR1	P40088	404 aa		15.17	■□□□□ 0.02
DEP1	YAL013W	DAS1	P47005	663 aa		15.17	■□□□□ 0.02
DEP1	YAL013W	TSR1	Q07381	788 aa	Known RBP	15.17	■□□□□ 0.02
DEP1	YAL013W	SIL1	Q08199	421 aa		15.17	■□□□□ 0.02
DEP1	YAL013W	YOR131C	Q12486	218 aa		15.17	■□□□□ 0.02
DEP1	YAL013W	COX4	P04037	155 aa		15.16	■□□□□ 0.02
DEP1	YAL013W	WHI2	P12611	486 aa		15.16	■□□□□ 0.02
DEP1	YAL013W	NAT1	P12945	854 aa	Known RBP	15.16	■□□□□ 0.02

Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms