RNA–Protein interactions for RNA: YJR001W

AVT1, Transcript of Vacuolar transporter, yeast

Gene AVT1, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AVT1	YJR001W	HXT8	P40886	569 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	GPD2	P41911	440 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	MEP3	P53390	489 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	PNG1	Q02890	363 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	TRS130	Q03660	1102 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	NSE5	Q03718	556 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	MTQ2	Q03920	221 aa	Predicted RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	SAS4	Q04003	481 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	ATG26	Q06321	1198 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	ARV1	Q06541	321 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	UTP4	Q06679	776 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	BMT6	Q12291	365 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	CMR1	Q12510	522 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	MDM12	Q92328	271 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	MMS1	Q06211	1407 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	KEX2	P13134	814 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	MER1	P16523	270 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	KAR3	P17119	729 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	RPB4	P20433	221 aa	Predicted RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	PSO2	P30620	661 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	SMY1	P32364	656 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	PRP40	P33203	583 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	VBA5	P36172	582 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	CNN1	P43618	361 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	SUT1	P53032	299 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	KXD1	P53158	218 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	YNR063W	P53749	607 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	TBF1	Q02457	562 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	SPP1	Q03012	353 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	MRD1	Q06106	887 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	SMD2	Q06217	110 aa	Known RBP	4.86	□□□□□ -1.63
AVT1	YJR001W	HDA3	Q06623	655 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	GIC2	Q06648	383 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	ATG20	Q07528	640 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	YDL206W	Q12424	762 aa		4.86	□□□□□ -1.63
AVT1	YJR001W	SEA4	P38164	1038 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	LRP1	P38801	184 aa	Known RBP	4.85	□□□□□ -1.63
AVT1	YJR001W	ARB1	P40024	610 aa	Known RBP	4.85	□□□□□ -1.63
AVT1	YJR001W	RAD26	P40352	1085 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	DSN1	P40568	576 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	SGD1	Q06132	899 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	YCS4	Q06156	1176 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	PMT7	Q06644	662 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	INP54	Q08227	384 aa	Known RBP	4.85	□□□□□ -1.63
AVT1	YJR001W	BMS1	Q08965	1183 aa	Known RBP	4.85	□□□□□ -1.63
AVT1	YJR001W	TMA46	Q12000	345 aa	Known RBP	4.85	□□□□□ -1.63
AVT1	YJR001W	SCM3	Q12334	223 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	GYP5	Q12344	894 aa		4.85	□□□□□ -1.63
AVT1	YJR001W	MSS18	P08593	268 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	RED1	P14291	827 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	TPD3	P31383	635 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	UGA4	P32837	571 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	BEM3	P32873	1128 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	PBY1	P38254	753 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	OTU2	P38747	307 aa	Known RBP	4.84	□□□□□ -1.63
AVT1	YJR001W	DUG1	P43616	481 aa	Known RBP	4.84	□□□□□ -1.63
AVT1	YJR001W	IML2	P47031	731 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	RAD17	P48581	401 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	YML6	P51998	286 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	YNL050C	P53952	270 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	YML119W	Q03208	357 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	ERF2	Q06551	359 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	RSC58	Q07979	502 aa		4.84	□□□□□ -1.63
AVT1	YJR001W	PET123	P17558	318 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	MRPL25	P23369	157 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SBA1	P28707	216 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	MCM5	P29496	775 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	DPH2	P32461	534 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	ABD1	P32783	436 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	DHR2	P36009	735 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	TBS1	P38114	1094 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	POP2	P39008	433 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	GTT3	P39996	337 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	YER034W	P40022	185 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	UTP18	P40362	594 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	NIT2	P47016	307 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SNZ1	Q03148	297 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	ADI1	Q03677	179 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	RNH1	Q04740	348 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	ORM2	Q06144	216 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	YPR097W	Q06839	1073 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SEC7	P11075	2009 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	DOP1	Q03921	1698 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	HNM1	P19807	563 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	PRP5	P21372	849 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	BUD14	P27637	709 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	RAD16	P31244	790 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	HIR2	P32480	875 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SCT1	P32784	759 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	MRE11	P32829	692 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	IXR1	P33417	597 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	AMN1	P38285	549 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
AVT1	YJR001W	SWD1	P39706	426 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	ERR3	P42222	437 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SET2	P46995	733 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	CCT8	P47079	568 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	GNP1	P48813	663 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	KRE33	P53914	1056 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	YDR338C	Q05497	695 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 60.7 ms