RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W RAV1P47104 1357 aa2.38□□□□□ -2.03
CTF4YPR135W FLP1P03870 423 aa2.38□□□□□ -2.03
CTF4YPR135W RAD4P14736 754 aa2.38□□□□□ -2.03
CTF4YPR135W MCM5P29496 775 aaKnown RBP2.38□□□□□ -2.03
CTF4YPR135W ARL1P38116 183 aaKnown RBP2.38□□□□□ -2.03
CTF4YPR135W RRT14P40470 206 aa2.38□□□□□ -2.03
CTF4YPR135W QDR1P40475 563 aa2.38□□□□□ -2.03
CTF4YPR135W MON1P53129 644 aa2.38□□□□□ -2.03
CTF4YPR135W PNS1Q12412 539 aa2.38□□□□□ -2.03
CTF4YPR135W PRE10P21242 288 aaKnown RBP RIP-Chip data2.38□□□□□ -2.03not detected
CTF4YPR135W NEM1P38757 446 aa2.38□□□□□ -2.03
CTF4YPR135W NUT1P53114 1132 aa2.38□□□□□ -2.03
CTF4YPR135W BSC2Q05611 235 aa2.38□□□□□ -2.03
CTF4YPR135W RIX7Q07844 837 aaKnown RBP2.38□□□□□ -2.03
CTF4YPR135W YLR358CO13565 187 aa2.37□□□□□ -2.03
CTF4YPR135W EXO5P38289 585 aa2.37□□□□□ -2.03
CTF4YPR135W YAR028WP39548 234 aa2.37□□□□□ -2.03
CTF4YPR135W XKS1P42826 600 aa2.37□□□□□ -2.03
CTF4YPR135W YKL077WP36081 392 aa2.37□□□□□ -2.03
CTF4YPR135W SHC1P39000 512 aa2.37□□□□□ -2.03
CTF4YPR135W SPT20P50875 604 aa2.37□□□□□ -2.03
CTF4YPR135W KAR5Q04746 504 aa2.37□□□□□ -2.03
CTF4YPR135W MDL2P33311 773 aa2.36□□□□□ -2.03
CTF4YPR135W UBP3Q01477 912 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03 RIP-Chip
CTF4YPR135W YPR117WQ06116 2489 aa2.36□□□□□ -2.03
CTF4YPR135W TOP1P04786 769 aa2.36□□□□□ -2.03
CTF4YPR135W FBP1P09201 348 aa2.36□□□□□ -2.03
CTF4YPR135W ENP1P38333 483 aaKnown RBP2.36□□□□□ -2.03
CTF4YPR135W CHZ1P40019 153 aaPredicted RBP2.36□□□□□ -2.03
CTF4YPR135W YNL011CP53980 444 aa2.36□□□□□ -2.03
CTF4YPR135W YDR132CQ03900 495 aa2.36□□□□□ -2.03
CTF4YPR135W PPH3P32345 308 aa2.35□□□□□ -2.03
CTF4YPR135W MOT2P34909 587 aaKnown RBP2.35□□□□□ -2.03
CTF4YPR135W MPT5P39016 859 aaKnown RBP RIP-Chip data2.35□□□□□ -2.03not detected
CTF4YPR135W INP54Q08227 384 aaKnown RBP2.35□□□□□ -2.03
CTF4YPR135W PFF1P38244 976 aa2.35□□□□□ -2.03
CTF4YPR135W YJL045WP47052 634 aa2.35□□□□□ -2.03
CTF4YPR135W RSA3Q05942 220 aaKnown RBP2.35□□□□□ -2.03
CTF4YPR135W HRK1Q08732 759 aaKnown RBP2.35□□□□□ -2.03
CTF4YPR135W YOR352WQ08816 343 aa2.35□□□□□ -2.03
CTF4YPR135W MNL2Q12205 849 aa2.35□□□□□ -2.03
CTF4YPR135W SIR4P11978 1358 aa2.35□□□□□ -2.03
CTF4YPR135W GSC2P40989 1895 aa2.35□□□□□ -2.03
CTF4YPR135W TAT2P38967 592 aa2.34□□□□□ -2.03
CTF4YPR135W UTP10P42945 1769 aaKnown RBP2.34□□□□□ -2.03
CTF4YPR135W YNR063WP53749 607 aa2.34□□□□□ -2.03
CTF4YPR135W TRS120Q04183 1289 aa2.34□□□□□ -2.03
CTF4YPR135W YLL067CQ07888 1374 aa2.34□□□□□ -2.03
CTF4YPR135W YPT53P36019 220 aa2.34□□□□□ -2.04
CTF4YPR135W PEA2P40091 420 aa2.34□□□□□ -2.04
CTF4YPR135W MTR4P47047 1073 aaKnown RBP2.34□□□□□ -2.04
CTF4YPR135W CDC55Q00362 526 aa2.34□□□□□ -2.04
CTF4YPR135W SUB2Q07478 446 aaKnown RBP2.34□□□□□ -2.04
CTF4YPR135W RPO41P13433 1351 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W SMY1P32364 656 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W RVS167P39743 482 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W PMD1P32634 1753 aa2.33□□□□□ -2.04
CTF4YPR135W SPS1P08458 490 aa2.33□□□□□ -2.04
CTF4YPR135W SRO9P25567 434 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W ICL1P28240 557 aaPredicted RBP2.33□□□□□ -2.04
CTF4YPR135W HSE1P38753 452 aa2.33□□□□□ -2.04
CTF4YPR135W LAM1P38851 1228 aa2.33□□□□□ -2.04
CTF4YPR135W MEF2P39677 819 aa2.33□□□□□ -2.04
CTF4YPR135W ATG1P53104 897 aa2.33□□□□□ -2.04
CTF4YPR135W ADE16P54113 591 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W RPL34AP87262 121 aaPredicted RBP2.33□□□□□ -2.04
CTF4YPR135W GCN5Q03330 439 aa2.33□□□□□ -2.04
CTF4YPR135W UTP5Q04177 643 aaKnown RBP2.33□□□□□ -2.04
CTF4YPR135W SGD1Q06132 899 aa2.33□□□□□ -2.04
CTF4YPR135W RSC58Q07979 502 aa2.33□□□□□ -2.04
CTF4YPR135W AIM44Q99299 758 aa2.33□□□□□ -2.04
CTF4YPR135W RTC1Q08281 1341 aa2.33□□□□□ -2.04
CTF4YPR135W CUP1-1P0CX80 61 aa2.32□□□□□ -2.04
CTF4YPR135W CUP1-2P0CX81 61 aa2.32□□□□□ -2.04
CTF4YPR135W GEF1P37020 779 aa2.32□□□□□ -2.04
CTF4YPR135W SHU2P38957 223 aa2.32□□□□□ -2.04
CTF4YPR135W ERO1Q03103 563 aa2.32□□□□□ -2.04
CTF4YPR135W ROT1Q03691 256 aa2.32□□□□□ -2.04
CTF4YPR135W PUS9Q12069 462 aa2.32□□□□□ -2.04
CTF4YPR135W NUM1Q00402 2748 aa2.32□□□□□ -2.04
CTF4YPR135W GRX1P25373 110 aaKnown RBP2.32□□□□□ -2.04
CTF4YPR135W SLI1P53304 468 aa2.32□□□□□ -2.04
CTF4YPR135W TIM50Q02776 476 aa2.32□□□□□ -2.04
CTF4YPR135W CSR2Q12734 1121 aa2.32□□□□□ -2.04
CTF4YPR135W YDR034W-BQ6Q5X2 51 aa2.32□□□□□ -2.04
CTF4YPR135W HKR1P41809 1802 aa2.32□□□□□ -2.04
CTF4YPR135W APE3P37302 537 aaKnown RBP2.32□□□□□ -2.04
CTF4YPR135W ACF4P47129 309 aa2.32□□□□□ -2.04
CTF4YPR135W ATG13Q06628 738 aa2.32□□□□□ -2.04
CTF4YPR135W CYC1P00044 109 aaPredicted RBP2.31□□□□□ -2.04
CTF4YPR135W TRM2P33753 639 aa2.31□□□□□ -2.04
CTF4YPR135W ATG14P38270 344 aa2.31□□□□□ -2.04
CTF4YPR135W MSE1P48525 536 aa2.31□□□□□ -2.04
CTF4YPR135W PEX13P80667 386 aa2.31□□□□□ -2.04
CTF4YPR135W LAP2Q10740 671 aa2.31□□□□□ -2.04
CTF4YPR135W MSH3P25336 1018 aa2.31□□□□□ -2.04
CTF4YPR135W YSC84P32793 468 aa2.31□□□□□ -2.04
CTF4YPR135W SLD2P34252 453 aa2.31□□□□□ -2.04
CTF4YPR135W NOC3Q07896 663 aaPredicted RBP2.31□□□□□ -2.04
CTF4YPR135W RCL1Q08096 367 aaPredicted RBP2.31□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 34.1 ms