RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PIK3C2BO00750 1634 aa10.39□□□□□ -0.75
CCDC88A-213ENST00000476903 TET3O43151 1660 aa10.38□□□□□ -0.75
CCDC88A-213ENST00000476903 GCC2Q8IWJ2 1684 aa10.38□□□□□ -0.75
CCDC88A-213ENST00000476903 PPARGC1BQ86YN6 1023 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-213ENST00000476903 NPHP4O75161 1426 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-213ENST00000476903 UNC13BO14795 1591 aa10.38□□□□□ -0.75
CCDC88A-213ENST00000476903 MINK1Q8N4C8 1332 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-213ENST00000476903 CPS1P31327 1500 aa10.37□□□□□ -0.75
CCDC88A-213ENST00000476903 RPRD2Q5VT52 1461 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-213ENST00000476903 SYNMO15061 1565 aa10.36□□□□□ -0.75
CCDC88A-213ENST00000476903 CCNYL3P0C7X3 344 aa10.36□□□□□ -0.75
CCDC88A-213ENST00000476903 SLIT1O75093 1534 aa10.36□□□□□ -0.75
CCDC88A-213ENST00000476903 SCAF11Q99590 1463 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-213ENST00000476903 NOS1P29475 1434 aa10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 MPNDQ8N594 471 aa10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 KLF16Q9BXK1 252 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 EVA1BQ9NVM1 165 aa10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 TLL2Q9Y6L7 1015 aa10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 ARHGAP23Q9P227 1491 aa10.35□□□□□ -0.75
CCDC88A-213ENST00000476903 IQGAP3Q86VI3 1631 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 VSIG8P0DPA2 414 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 ITGAEP38570 1179 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 BAP1Q92560 729 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 CCDC102AQ96A19 550 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 GPCPD1Q9NPB8 672 aa10.34□□□□□ -0.75
CCDC88A-213ENST00000476903 RRBP1Q9P2E9 1410 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 MYO5BQ9ULV0 1848 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 FDX1P10109 184 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 MS4A1P11836 297 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 PTPRNQ16849 979 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 UNC93B1Q9H1C4 597 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 EID1Q9Y6B2 187 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 E9PCH4 1651 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 ADGRB3O60242 1522 aa10.33□□□□□ -0.76
CCDC88A-213ENST00000476903 STRCP1A6NGW2 1772 aa10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 TMEM2Q9UHN6 1383 aa10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 IDI1Q13907 227 aa10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 MRPL14Q6P1L8 145 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 TXNDC2Q86VQ3 553 aa10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 SLC52A1Q9NWF4 448 aa10.32□□□□□ -0.76
CCDC88A-213ENST00000476903 TIMP2P16035 220 aa10.31□□□□□ -0.76
CCDC88A-213ENST00000476903 GSK3AP49840 483 aa10.31□□□□□ -0.76
CCDC88A-213ENST00000476903 NNTQ13423 1086 aa10.31□□□□□ -0.76
CCDC88A-213ENST00000476903 LINC01559Q495D7 138 aa10.31□□□□□ -0.76
CCDC88A-213ENST00000476903 NUTM1Q86Y26 1132 aa10.31□□□□□ -0.76
CCDC88A-213ENST00000476903 SOBPA7XYQ1 873 aa10.3□□□□□ -0.76
CCDC88A-213ENST00000476903 UBAP1LF5GYI3 381 aa10.3□□□□□ -0.76
CCDC88A-213ENST00000476903 LTKP29376 864 aa10.3□□□□□ -0.76
CCDC88A-213ENST00000476903 CLCN1P35523 988 aa10.3□□□□□ -0.76
CCDC88A-213ENST00000476903 KCNH2Q12809 1159 aa10.3□□□□□ -0.76
CCDC88A-213ENST00000476903 NUP155O75694 1391 aa10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 C6orf229H3BNL8 230 aa10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 VARSP26640 1264 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 ZNF511Q8NB15 262 aa10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 PURBQ96QR8 312 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 TMEM131LA2VDJ0 1609 aa10.29□□□□□ -0.76
CCDC88A-213ENST00000476903 SPHKAPQ2M3C7 1700 aa10.27□□□□□ -0.76
CCDC88A-213ENST00000476903 TOM1O60784 492 aa10.27□□□□□ -0.77
CCDC88A-213ENST00000476903 SPIRE2Q8WWL2 714 aa10.27□□□□□ -0.77
CCDC88A-213ENST00000476903 LRRC7Q96NW7 1537 aa10.27□□□□□ -0.77
CCDC88A-213ENST00000476903 PLEKHG3A1L390 1219 aa10.26□□□□□ -0.77
CCDC88A-213ENST00000476903 NDUFV2P19404 249 aa10.26□□□□□ -0.77
CCDC88A-213ENST00000476903 PLCB2Q00722 1185 aa10.26□□□□□ -0.77
CCDC88A-213ENST00000476903 SUZ12Q15022 739 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-213ENST00000476903 XIRP1Q702N8 1843 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-213ENST00000476903 ADH1CP00326 375 aa10.25□□□□□ -0.77
CCDC88A-213ENST00000476903 WDR4P57081 412 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-213ENST00000476903 PRR7Q8TB68 274 aa10.25□□□□□ -0.77
CCDC88A-213ENST00000476903 ZFYVE9O95405 1425 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 NAIPQ13075 1403 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 RIMS2Q9UQ26 1411 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 MOXD2PA6NHM9 499 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 SCARF1Q14162 830 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 DESI1Q6ICB0 168 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 HFM1A2PYH4 1435 aa10.24□□□□□ -0.77
CCDC88A-213ENST00000476903 PPP1R15AO75807 674 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 PIP4K2BP78356 416 aa10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 KCNMA1Q12791 1236 aa10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 BCANQ96GW7 911 aa10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 CDK15Q96Q40 435 aa10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 PLEKHG1Q9ULL1 1385 aa10.23□□□□□ -0.77
CCDC88A-213ENST00000476903 NWD1Q149M9 1564 aa10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 ALKQ9UM73 1620 aa10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 CHD2O14647 1828 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 SLC26A8Q96RN1 970 aa10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
CCDC88A-213ENST00000476903 KIF1BO60333 1816 aa10.21□□□□□ -0.77
CCDC88A-213ENST00000476903 KCNA6P17658 529 aa10.21□□□□□ -0.77
CCDC88A-213ENST00000476903 SSTR3P32745 418 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-213ENST00000476903 NKTRP30414 1462 aaKnown RBP10.21□□□□□ -0.78
CCDC88A-213ENST00000476903 DIP2AQ14689 1571 aa10.21□□□□□ -0.78
CCDC88A-213ENST00000476903 TRPM2O94759 1503 aa10.2□□□□□ -0.78
CCDC88A-213ENST00000476903 ZFAND3Q9H8U3 227 aa10.2□□□□□ -0.78
CCDC88A-213ENST00000476903 CLTCL1P53675 1640 aa10.19□□□□□ -0.78
CCDC88A-213ENST00000476903 DISP3Q9P2K9 1392 aa10.19□□□□□ -0.78
CCDC88A-213ENST00000476903 PPFIA3O75145 1194 aa10.19□□□□□ -0.78
CCDC88A-213ENST00000476903 TRIM52Q96A61 297 aa10.19□□□□□ -0.78
CCDC88A-213ENST00000476903 NR3C2P08235 984 aa10.18□□□□□ -0.78
CCDC88A-213ENST00000476903 HSPA1LP34931 641 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms