Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL157400.5-201ENST00000507624 621 ntBASIC39.58■■■■□ 3.93
COL17A1Q9UMD9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC39.58■■■■□ 3.93
COL17A1Q9UMD9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC39.58■■■■□ 3.93
COL17A1Q9UMD9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC39.57■■■■□ 3.93
COL17A1Q9UMD9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC39.56■■■■□ 3.92
COL17A1Q9UMD9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
COL17A1Q9UMD9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC39.55■■■■□ 3.92
COL17A1Q9UMD9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
COL17A1Q9UMD9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
COL17A1Q9UMD9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
COL17A1Q9UMD9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
COL17A1Q9UMD9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
COL17A1Q9UMD9 MIR219A2-201ENST00000608502 1504 ntBASIC39.53■■■■□ 3.92
COL17A1Q9UMD9 WHAMMP2-203ENST00000563942 1603 ntBASIC39.53■■■■□ 3.92
COL17A1Q9UMD9 GUSBP5-201ENST00000418136 578 ntBASIC39.52■■■■□ 3.92
COL17A1Q9UMD9 AC009831.1-201ENST00000580420 1582 ntBASIC39.52■■■■□ 3.92
COL17A1Q9UMD9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
COL17A1Q9UMD9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
COL17A1Q9UMD9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
COL17A1Q9UMD9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
COL17A1Q9UMD9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC39.49■■■■□ 3.91
COL17A1Q9UMD9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC39.49■■■■□ 3.91
COL17A1Q9UMD9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC39.48■■■■□ 3.91
COL17A1Q9UMD9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
COL17A1Q9UMD9 HES6-204ENST00000409182 863 ntTSL 2 BASIC39.47■■■■□ 3.91
COL17A1Q9UMD9 MED25-210ENST00000612854 801 ntTSL 5 BASIC39.47■■■■□ 3.91
COL17A1Q9UMD9 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC39.47■■■■□ 3.91
COL17A1Q9UMD9 MED25-214ENST00000622402 642 ntTSL 5 BASIC39.47■■■■□ 3.91
COL17A1Q9UMD9 AC135983.2-203ENST00000454486 1613 ntBASIC39.47■■■■□ 3.91
COL17A1Q9UMD9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC39.46■■■■□ 3.91
COL17A1Q9UMD9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC39.45■■■■□ 3.91
COL17A1Q9UMD9 AC007029.1-201ENST00000604183 313 ntBASIC39.45■■■■□ 3.91
COL17A1Q9UMD9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC39.44■■■■□ 3.9
COL17A1Q9UMD9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC39.44■■■■□ 3.9
COL17A1Q9UMD9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC39.43■■■■□ 3.9
COL17A1Q9UMD9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC39.42■■■■□ 3.9
COL17A1Q9UMD9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC39.41■■■■□ 3.9
COL17A1Q9UMD9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
COL17A1Q9UMD9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC39.4■■■■□ 3.9
COL17A1Q9UMD9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC39.4■■■■□ 3.9
COL17A1Q9UMD9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC39.4■■■■□ 3.9
COL17A1Q9UMD9 AC110285.7-201ENST00000624417 1536 ntBASIC39.39■■■■□ 3.9
COL17A1Q9UMD9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC39.39■■■■□ 3.9
COL17A1Q9UMD9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC39.38■■■■□ 3.9
COL17A1Q9UMD9 OR2A1-AS1-204ENST00000470435 602 ntBASIC39.38■■■■□ 3.9
COL17A1Q9UMD9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC39.38■■■■□ 3.89
COL17A1Q9UMD9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC39.37■■■■□ 3.89
COL17A1Q9UMD9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
COL17A1Q9UMD9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
COL17A1Q9UMD9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 AC010864.1-201ENST00000609407 1511 ntBASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
COL17A1Q9UMD9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 AC010980.1-201ENST00000587192 1142 ntBASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 AC133552.2-201ENST00000619106 1032 ntBASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
COL17A1Q9UMD9 KRT8P33-201ENST00000508125 1423 ntBASIC39.34■■■■□ 3.89
COL17A1Q9UMD9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
COL17A1Q9UMD9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
COL17A1Q9UMD9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC39.33■■■■□ 3.89
COL17A1Q9UMD9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
COL17A1Q9UMD9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC39.33■■■■□ 3.89
COL17A1Q9UMD9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
COL17A1Q9UMD9 RP9P-202ENST00000450133 1212 ntBASIC39.32■■■■□ 3.89
COL17A1Q9UMD9 AC103834.1-201ENST00000520383 144 ntBASIC39.32■■■■□ 3.89
COL17A1Q9UMD9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC39.31■■■■□ 3.88
COL17A1Q9UMD9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
COL17A1Q9UMD9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC39.31■■■■□ 3.88
COL17A1Q9UMD9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC39.31■■■■□ 3.88
COL17A1Q9UMD9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
COL17A1Q9UMD9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC39.3■■■■□ 3.88
COL17A1Q9UMD9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC39.3■■■■□ 3.88
COL17A1Q9UMD9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
COL17A1Q9UMD9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC39.3■■■■□ 3.88
COL17A1Q9UMD9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC39.29■■■■□ 3.88
COL17A1Q9UMD9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC39.29■■■■□ 3.88
COL17A1Q9UMD9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC39.27■■■■□ 3.88
COL17A1Q9UMD9 AC120057.4-201ENST00000624722 1615 ntBASIC39.27■■■■□ 3.88
COL17A1Q9UMD9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC39.27■■■■□ 3.88
COL17A1Q9UMD9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 DUX4L9-201ENST00000449051 1259 ntBASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
COL17A1Q9UMD9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC39.25■■■■□ 3.87
COL17A1Q9UMD9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC39.25■■■■□ 3.87
COL17A1Q9UMD9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC39.25■■■■□ 3.87
COL17A1Q9UMD9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC39.25■■■■□ 3.87
COL17A1Q9UMD9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC39.24■■■■□ 3.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms