Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
CUEDC1Q9NWM3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUEDC1Q9NWM3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L13-201ENST00000554103 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L15-201ENST00000611059 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L23-201ENST00000615195 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L24-201ENST00000617576 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L22-201ENST00000618238 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L20-201ENST00000619712 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L21-201ENST00000622058 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L10-201ENST00000622460 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L25-201ENST00000624915 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 AC110285.7-201ENST00000624417 1536 ntBASIC24.51■■□□□ 1.51
CUEDC1Q9NWM3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUEDC1Q9NWM3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUEDC1Q9NWM3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 HSD17B1P1-201ENST00000590052 955 ntBASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CR559946.2-201ENST00000623684 991 ntBASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CUEDC1Q9NWM3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CUEDC1Q9NWM3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUEDC1Q9NWM3 AP002414.2-202ENST00000590929 1450 ntBASIC24.45■■□□□ 1.5
CUEDC1Q9NWM3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 MIR3648-2-201ENST00000581792 180 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 MIR3648-1-201ENST00000615959 180 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 AC142086.6-201ENST00000621154 1765 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUEDC1Q9NWM3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 AC016575.1-201ENST00000607026 382 ntBASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms